+F Repair protein KO
#
DNA Repair and Recombination Proteins - Xanthomonas campestris pv. campestris B100
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D xcc-b100_1508 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D xcc-b100_2863 Putative photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E xcc-b100_3954 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E xcc-b100_1856 3-methyladenine DNA glycosylase, probable K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E xcc-b100_1748 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E xcc-b100_2728 Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D xcc-b100_0980 nucS; endonuclease S1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D xcc-b100_2018 Nudix hydrolase family protein, probable K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D xcc-b100_3619 Putative NUDIX hydrolase family / thiamine monophosphate synthase fusionprotein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D xcc-b100_4042 unnamed protein product K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D xcc-b100_1508 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D xcc-b100_2863 Putative photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D xcc-b100_3021 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E xcc-b100_3954 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E xcc-b100_3808 conserved hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E xcc-b100_3850 Uracil DNA glycosylase superfamily protein,probable K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E xcc-b100_4069 putative phage-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E xcc-b100_3208 DNA-3-methyladenine glycosylase, probable K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E xcc-b100_1509 DNA methylation and regulatory protein (methylated-DNA--[protein]-cysteine S-methyltransferase) K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E xcc-b100_1856 3-methyladenine DNA glycosylase, probable K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E xcc-b100_1748 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E xcc-b100_1411 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E xcc-b100_4366 mutM2; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E xcc-b100_0669 mutM1; DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E xcc-b100_2728 Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E xcc-b100_2298 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E xcc-b100_4030 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E xcc-b100_4247 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E xcc-b100_1451 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E xcc-b100_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E xcc-b100_2690 lig1; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E xcc-b100_4213 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E xcc-b100_3190 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E xcc-b100_3257 Putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E xcc-b100_1674 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E xcc-b100_2065 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E xcc-b100_1738 putative excinuclease K05984 cho; excinuclease Cho [EC:3.1.25.-]
E xcc-b100_4219 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E xcc-b100_2435 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E xcc-b100_4213 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
E xcc-b100_2690 lig1; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F xcc-b100_3466 DNA directed RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F xcc-b100_3465 DNA directed RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F xcc-b100_3435 DNA directed RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F xcc-b100_0936 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F xcc-b100_1463 Transcription-repair coupling factor (TRCF). K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E xcc-b100_3132 DNA mismatch repair protein mutS. K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E xcc-b100_1880 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E xcc-b100_2709 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E xcc-b100_1875 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E xcc-b100_3109 hypothetical protein predicted by Glimmer/Critica K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E xcc-b100_1563 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E xcc-b100_2938 dnaE2; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E xcc-b100_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E xcc-b100_3706 DNA polymerase III holoenzyme chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E xcc-b100_1543 unnamed protein product K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E xcc-b100_3335 DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E xcc-b100_3370 DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E xcc-b100_3359 DNA polymerase III tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E xcc-b100_2690 lig1; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E xcc-b100_4219 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E xcc-b100_2435 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E xcc-b100_2411 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
E xcc-b100_1426 Single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E xcc-b100_4419 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E xcc-b100_4420 exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E xcc-b100_4418 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E xcc-b100_2537 RecA protein K03553 recA; recombination protein RecA
E xcc-b100_1171 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E xcc-b100_1174 Holliday junction binding protein DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E xcc-b100_1170 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E xcc-b100_3947 Primosomal protein N' (Replication factor Y). K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E xcc-b100_2709 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E xcc-b100_2537 RecA protein K03553 recA; recombination protein RecA
E xcc-b100_3175 DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E xcc-b100_0003 DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E xcc-b100_0947 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E xcc-b100_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E xcc-b100_3028 Putative DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E xcc-b100_3357 Recombination protein RecR K06187 recR; recombination protein RecR
E xcc-b100_2802 Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N)
E xcc-b100_4303 rdgC; putative recombination-associated protein K03554 rdgC; recombination associated protein RdgC
E xcc-b100_1171 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E xcc-b100_1174 Holliday junction binding protein DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E xcc-b100_1170 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E xcc-b100_1604 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E xcc-b100_0114 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
E xcc-b100_1871 lig2; DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E xcc-b100_0115 dnl; DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F xcc-b100_2686 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F xcc-b100_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F xcc-b100_3936 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F xcc-b100_0039 putative DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F xcc-b100_3377 histone-like protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F xcc-b100_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F xcc-b100_3028 Putative DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F xcc-b100_3357 Recombination protein RecR K06187 recR; recombination protein RecR
F xcc-b100_2690 lig1; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F xcc-b100_0538 putative Fis family DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F xcc-b100_1710 ihfA; integration host factor alpha chain K04764 ihfA; integration host factor subunit alpha
F xcc-b100_1987 Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F xcc-b100_2709 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F xcc-b100_1204 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F xcc-b100_3190 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F xcc-b100_3257 Putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F xcc-b100_1674 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F xcc-b100_3717 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F xcc-b100_1063 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D xcc-b100_3767 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D xcc-b100_2537 RecA protein K03553 recA; recombination protein RecA
D xcc-b100_2538 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D xcc-b100_3247 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D xcc-b100_2802 Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N)
D xcc-b100_3246 Conserved hypothetical protein K14160 imuA; protein ImuA
D xcc-b100_3245 unnamed protein product K14161 imuB; protein ImuB
D xcc-b100_3244 dnaE1; dnaE1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D xcc-b100_2411 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D xcc-b100_1426 Single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D xcc-b100_1250 putative DNA-related protein K14623 dinD; DNA-damage-inducible protein D
D xcc-b100_2536 Regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D xcc-b100_4352 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D xcc-b100_1222 putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D xcc-b100_4138 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D xcc-b100_3014 ATP-dependent helicase, probable K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D xcc-b100_1855 ATP-dependent DNA helicase Lhr, probable K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D xcc-b100_2018 Nudix hydrolase family protein, probable K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D xcc-b100_3619 Putative NUDIX hydrolase family / thiamine monophosphate synthase fusionprotein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D xcc-b100_4042 unnamed protein product K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D xcc-b100_4178 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D xcc-b100_4177 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024