+E Transcription factors KO
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Transcription Factors - Xanthomonas campestris pv. campestris 8004
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D XC_2063 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D XC_0367 PobR regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D XC_1102 transcriptional regulator araC family K13652 K13652; AraC family transcriptional regulator
D XC_0848 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D XC_1940 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D XC_1465 DNA methylation and regulatory protein Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D XC_1490 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XC_3425 transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D XC_0327 transcriptional regulator metE/metH family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D XC_3398 oxidative stress transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XC_2755 hydrogen peroxide-inducible genes activator protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XC_1153 transcriptional regulator lysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D XC_4118 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D XC_1118 transcriptional activator ampR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D XC_2801 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D XC_1574 transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D XC_0373 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D XC_0752 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_2729 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_1909 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_4222 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_0159 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_1006 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_4192 sal operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XC_1745 transcriptional regulator lacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D XC_2652 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D XC_0750 transcriptional regulator gntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D XC_3428 transcriptional regulator gntR family K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D XC_0243 transcriptional regulator tetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D XC_2157 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D XC_0830 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D XC_3027 transcriptional regulator K20325 fhrR; TetR/AcrR family transcriptional regulator, Clp-modulated transcription factor
D XC_3966 transcriptional regulator tetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D XC_3720 leucine responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XC_0166 transcriptional regulator asnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D XC_1295 transcriptional regulator ahyR/asaR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
C MarR family
D XC_4254 transcriptional regulator for cryptic hemolysin K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XC_2827 transcriptional regulator marR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D XC_0273 transcriptional regulator marR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D XC_1280 transcriptional regulator soxR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D XC_2767 ferric uptake regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D XC_1430 transcriptional regulator fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D XC_0385 transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D XC_0486 CAP-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XC_2384 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
C XRE family
D XC_2982 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
D XC_2887 conserved hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D XC_1948 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D XC_0916 transcriptional regulator blaI family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D XC_4026 biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D XC_0520 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XC_3216 propionate catabolism regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D XC_2253 transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D XC_0689 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D XC_4314 sugar diacide regulator K02647 cdaR; carbohydrate diacid regulator
D XC_4061 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D XC_3907 PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D XC_0774 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D XC_1908 conserved hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D XC_3934 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XC_2765 heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor
D XC_2494 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D XC_3399 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D XC_2072 phage-related protein K07733 alpA; prophage regulatory protein
D XC_2677 transcriptional regulator protein Pai2 K07734 paiB; transcriptional regulator
D XC_1365 transcriptional regulator K07735 algH; putative transcriptional regulator
D XC_1861 DnaK supressor K06204 dksA; RNA polymerase-binding transcription factor
D XC_3543 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D XC_3518 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0