+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Xiphophorus couchianus (Monterrey platyfish)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 114155807 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 114158778 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 114155154 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 114158805 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 114143795 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 114142604 ramac; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 114139304 ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 114151075 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 114143717 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 114143154 cleavage and polyadenylation specificity factor subunit 7-like K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 114161152 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 114139372 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 114152848 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 114156118 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 114158237 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 114159050 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 114133816 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 114160356 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 114145313 pre-mRNA 3'-end-processing factor FIP1-like isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 114151237 fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 114146221 wdr33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 114135081 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 114159890 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114154264 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114155380 serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114156816 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114157270 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114134297 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 114135792 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 114136087 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 114138861 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 114143282 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 114147759 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 114135291 small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 114150175 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 114135247 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 114141338 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 114147030 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 114156066 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 114139135 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 114158237 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 114159050 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 114133816 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 114138861 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 114147759 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
E 114153663 histone RNA hairpin-binding protein-like isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 114153505 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 114158578 casp8ap2; CASP8-associated protein 2 isoform X1 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 114152519 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 114161703 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 114157282 mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 114145551 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 114137132 mettl4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 114133391 mettl16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 114158569 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 114141858 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 114145211 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 114136051 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 114138212 zinc finger CCCH domain-containing protein 13-like K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 114143998 E3 ubiquitin-protein ligase RBBP6-like isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 114160896 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 114137387 poly(A) polymerase gamma-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 114137389 poly(A) polymerase gamma-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 114154959 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 114151093 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 114148948 bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 114142720 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 114142913 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 114144817 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 114144711 tardbp; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 114136111 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 114161600 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 114160966 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 114148291 mettl8; methyltransferase-like protein 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 114148229 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 114145079 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 114142310 tent5b; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 114158924 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 114139231 terminal nucleotidyltransferase 5C-like K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 114158925 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 114140541 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 114153155 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 114142358 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 114151225 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 114160018 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 114144929 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 114144930 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 114135930 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 114160142 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 114141162 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 114134116 pnn; pinin K13114 PNN; pinin
E 114146494 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 114156802 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 114160199 rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 114134344 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 114146430 thoc1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 114152873 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 114138645 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 114160018 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 114144929 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 114154974 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 114159683 thoc6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 114135850 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 114140595 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 114145112 eny2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 114139575 caltractin-like K10840 CETN2; centrin-2
E 114149020 cetn3; centrin-3 K16466 CETN3; centrin-3
E 114147810 mcm3ap; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 114146077 nucleoprotein TPR-like K09291 TPR; nucleoprotein TPR
E 114150770 tpr; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 114135447 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 114135875 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 114161126 nup37; nucleoporin Nup37 isoform X1 K14302 NUP37; nuclear pore complex protein Nup37
E 114159720 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 114158599 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 114140918 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 114149330 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 114148094 nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 114133493 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 114137148 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 114152869 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 114160946 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 114145382 nup133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 114150219 nup188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 114155998 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 114149966 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 114161540 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 114148970 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 114135044 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 114145942 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 114149447 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 114153757 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 114136844 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 114156572 nupl2; nucleoporin-like protein 2 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 114146183 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 114144542 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 114147834 E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 114134395 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 114146769 aaas; aladin K14320 AAAS; aladin
E 114149020 cetn3; centrin-3 K16466 CETN3; centrin-3
E 114154700 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 114139402 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 114139669 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 114138775 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 114142747 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 114156973 acidic leucine-rich nuclear phosphoprotein 32 family member B-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 114144192 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 114141405 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 114133910 elavl1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 114157422 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 114150948 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 114160068 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 114138985 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 114154605 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 114144610 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 114134825 vcpkmt; protein-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 114144606 transportin-2 K18727 TNPO2; transportin-2
E 114160025 transportin-2-like isoform X1 K18727 TNPO2; transportin-2
E 114137378 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 114145183 xpo1; exportin-1 K14290 XPO1; exportin-1
E 114149375 xpo7; exportin-7 K18460 XPO7; exportin-7
E 114159654 rangap1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 114152306 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 114146020 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 114134199 eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 114139139 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 114138594 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 114157517 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 114146531 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 114156865 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 114161565 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114146389 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114142710 eif4g2; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 114135423 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114135169 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 114161775 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 114150205 eukaryotic translation initiation factor 4E-binding protein 3-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 114155135 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 114137959 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 114139513 eukaryotic translation initiation factor 4E-binding protein 3-like isoform X1 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 114135215 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 114134355 angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 114158475 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 114150550 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 114157447 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 114139146 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 114139175 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 114150694 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 114152783 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 114134731 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 114142833 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114152790 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114150896 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114137886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114139234 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114138494 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 114147603 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 114146568 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 114158014 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 114134135 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 114147150 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 114155626 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114144169 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114155001 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 114139151 paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 114157079 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 114156420 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 114143108 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 114139081 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 114149249 denr; density-regulated protein isoform X1 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 114152142 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 114141176 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 114148934 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 114134288 heterogeneous nuclear ribonucleoprotein A1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 114150844 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 114153135 msi2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 114154346 msi1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 114135859 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 114158481 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 114156807 pelo; protein pelota homolog K06965 PELO; protein pelota
E 114142562 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 114136549 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 114135694 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 114140290 ATP-dependent RNA helicase DDX19B-like isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 114160527 xab2; pre-mRNA-splicing factor SYF1 isoform X1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 114141222 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 114141725 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 114146068 la-related protein 6-like K18733 LARP6; la-related protein 6
E 114143347 larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 114153212 pura; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 114139378 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 114154216 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 114150014 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 114159806 poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 114135210 zinc finger CCCH domain-containing protein 11A-like K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 114141950 leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 114152024 patl2; protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 114138796 etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 114159859 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 114148232 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 114146737 regulator of nonsense transcripts 1-like isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 114150704 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 114160968 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 114148286 regulator of nonsense transcripts 3A-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 114138878 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 114144578 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 114152467 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 114138792 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 114161548 ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 114154102 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114145133 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114139494 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114137729 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114139040 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114149977 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 114134281 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 114133891 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 114147707 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 114158558 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 114155581 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 114158524 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 114157466 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 114134178 ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 114137846 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 114148599 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 114141773 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 114153156 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 114146548 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 114152853 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 114141810 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 114146568 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 114158014 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 114154197 secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 114142813 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 114133480 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 114160028 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 114144326 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 114149778 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 114161313 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 114149370 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 114150586 unconventional myosin-Va-like K10357 MYO5; myosin V
E 114143250 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 114135548 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 114155060 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 114161459 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 114146207 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 114135602 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 114134218 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 114144351 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 114159761 actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 114144876 mbp; myelin basic protein K17269 MBP; myelin basic protein
E 114144878 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 114156127 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 114147032 LOW QUALITY PROTEIN: vimentin-like K07606 VIM; vimentin
E 114138706 low molecular weight neuronal intermediate filament-like K07606 VIM; vimentin
E 114137552 metallothionein K14739 MT1_2; metallothionein 1/2
E 114136008 transcriptional regulator Myc-2-like K04377 MYC; Myc proto-oncogene protein
E 114137130 myc; myc proto-oncogene protein isoform X1 K04377 MYC; Myc proto-oncogene protein
E 114146318 transcriptional regulator Myc-like isoform X1 K04377 MYC; Myc proto-oncogene protein
E 114149900 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 114154055 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 114134069 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 114139534 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 114134805 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 114136791 nanos homolog 1-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 114144613 khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 114144563 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 114149515 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 114146386 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 114156606 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 114156607 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 114145395 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 114136718 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 114137783 elongation factor 1-alpha 1-like isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 114139048 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 114156634 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 114157030 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 114145941 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 114161967 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 114136825 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 114135186 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 114156346 insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 114134162 polypyrimidine tract-binding protein 1-like K13218 PTBP1; polypyrimidine tract-binding protein 1
E 114141452 polypyrimidine tract-binding protein 1-like isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 114142833 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114152790 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114150896 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114137886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114139234 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 114150550 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 114157447 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 114139146 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 114139175 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 114150694 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 114135268 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 114142713 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 114145307 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 114148957 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 114138563 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 114136058 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 114141260 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 114143410 caprin-1-like isoform X1 K18743 CAPRIN1; caprin-1
E 114158403 caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 114161175 caprin-2-like isoform X1 K18744 CAPRIN2; caprin-2
E 114148312 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 114146609 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 114141654 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 114156515 protein argonaute-3-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 114141549 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 114155477 protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 114156663 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 114146020 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 114134199 eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 114139139 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 114138594 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 114146737 regulator of nonsense transcripts 1-like isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 114150704 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 114138494 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 114147603 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 114155619 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 114161606 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 114146441 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 114140956 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 114154681 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 114146143 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 114143179 lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 114136026 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 114133478 protein LSM14 homolog A-like isoform X1 K18749 LSM14; protein LSM14
E 114136619 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 114135268 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 114142713 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 114148312 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 114142158 limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 114156804 LIM domain-containing protein ajuba-like K16682 AJUBA; LIM domain-containing protein
E 114142910 wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 114149238 putative helicase mov-10-B.2 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 114135545 putative helicase mov-10-B.1 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 114150299 mov10; helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 114141581 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 114150019 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 114148599 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 114141773 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 114153156 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 114146548 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 114133164 mRNA decay activator protein ZFP36-like K15308 TTP; tristetraprolin
E 114161348 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 114134172 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 114137919 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 114133604 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 114159106 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 114139951 lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 114144472 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 114160822 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 114138251 bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 114138691 protein bicaudal C homolog 1-B-like K18756 BICC1; protein bicaudal C
E 114148934 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 114134288 heterogeneous nuclear ribonucleoprotein A1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 114150831 prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 114144649 prkaca; cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 114146401 cAMP-dependent protein kinase catalytic subunit beta-like isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 114159753 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 114153015 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 114134183 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 114154492 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 114160407 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 114149118 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 114148256 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 114161171 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 114154954 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 114150892 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 114136093 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 114150719 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 114136645 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 114143880 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 114150349 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 114133210 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 114155748 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 114157303 klc2; kinesin light chain 2 isoform X1 K10407 KLC; kinesin light chain
E 114137455 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 114133511 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 114161313 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 114149370 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 114150586 unconventional myosin-Va-like K10357 MYO5; myosin V
E 114143250 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 114135548 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 114140589 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 114140795 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 114141078 tubulin alpha-1B chain-like isoform X1 K07374 TUBA; tubulin alpha
E 114141079 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 114150684 tubulin alpha chain-like isoform X1 K07374 TUBA; tubulin alpha
E 114140346 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 114140468 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 114150188 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 114147943 tubulin alpha chain K07374 TUBA; tubulin alpha
E 114147944 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 114147945 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 114150302 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 114150386 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 114142833 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114152790 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114150896 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114137886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114139234 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 114152783 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 114134731 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 114144335 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 114159138 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 114159970 tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 114159501 trinucleotide repeat-containing gene 6C protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 114159760 trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 114153970 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 114158497 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 114140913 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 114141563 cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 114155888 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 114158567 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 114138922 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 114154682 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 114152786 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 114139067 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 114142808 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 114147109 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 114140967 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 114136906 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 114142186 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 114159966 protein Tob1-like K14443 TOB; protein Tob/BTG
E 114152065 protein Tob1-like K14443 TOB; protein Tob/BTG
E 114159655 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 114160617 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 114153640 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 114153623 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 114135215 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 114144290 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 114153576 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 114155367 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 114144669 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 114160968 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 114148286 regulator of nonsense transcripts 3A-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 114138878 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 114144741 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 114145977 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 114155302 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 114139050 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 114138280 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 114150496 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 114153467 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 114143318 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 114134213 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 114136981 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 114140831 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 114154555 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 114149432 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 114137690 tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 114134135 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 114147150 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 114155626 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114144169 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114136825 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 114135186 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 114150550 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 114157447 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 114139146 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 114141405 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 114133910 elavl1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 114139317 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 114144440 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 114161724 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 114144548 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 114157517 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 114146531 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 114144930 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 114135169 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 114156865 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 114161565 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114146389 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114142710 eif4g2; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 114135423 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 114134221 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 114138894 rps6ka6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 114136428 rps6ka3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 114143627 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 114138655 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 114149230 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 114155101 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 114149726 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 114139402 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 114141131 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 114143567 tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 114142878 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
E 114137183 uncharacterized protein LOC114137183 K18763 LARP4; la-related protein 4
E 114135115 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
E 114146259 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 114148256 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 114161171 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 114149118 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 114155619 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 114161606 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 114153576 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 114155367 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 114144290 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 114154954 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 114150892 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 114136093 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 114150719 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 114136645 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 114143880 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 114150349 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 114133210 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 114146609 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 114158956 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 114148208 U8 snoRNA-decapping enzyme-like isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 114139758 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 114144505 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 114144675 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 114149026 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 114139614 exosc3; exosome complex component RRP40 isoform X1 K03681 RRP40; exosome complex component RRP40
E 114146402 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 114133573 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 114136134 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 114155333 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 114152975 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 114143957 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 114138112 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 114143668 dis3l; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 114147846 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 114138202 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 114133510 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 114142306 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 114156128 terminal nucleotidyltransferase 4A-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 114142971 tent4b; terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 114139275 zinc finger CCHC domain-containing protein 7-like isoform X1 K12597 AIR1_2; protein AIR1/2
E 114145626 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 114149525 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 114156420 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 114154652 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 114159732 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 114138922 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 114154682 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 114153970 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 114158497 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 114140913 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 114141563 cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 114155888 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 114158567 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 114152786 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 114139067 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 114148701 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 114152905 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 114140967 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 114136906 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 114144717 parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 114161453 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 114142186 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 114159966 protein Tob1-like K14443 TOB; protein Tob/BTG
E 114152065 protein Tob1-like K14443 TOB; protein Tob/BTG
E 114159655 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 114160617 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 114153640 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 114153623 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 114145157 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 114153060 noct; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 114141336 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 114144716 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 114139758 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 114136013 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 114158791 iron-responsive element-binding protein 2-like K22416 IREB2; iron-responsive element-binding protein 2
E 114144505 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 114137599 helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 114133972 nrde2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 114143440 samd4a; protein Smaug homolog 1 K27396 SMG; protein Smaug
E 114161543 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 114157495 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 114158126 zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 114153167 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 114147986 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 114156046 ribonuclease ZC3H12A-like K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 114142136 endoribonuclease ZC3H12A-like K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 114138404 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 114136626 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 114153754 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 114156004 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 114134952 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 114142007 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 114140583 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 114144933 eno1; enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 114137674 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 114147236 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 114148566 ATP-dependent 6-phosphofructokinase, liver type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 114142886 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 114135112 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 114136616 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 114138923 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 114148425 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 114149026 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 114144675 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 114146402 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 114155333 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024