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Transcription Machinery - Xanthomonas campestris pv. raphani
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E XCR_1112 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E XCR_1080 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E XCR_1081 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E XCR_3588 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E XCR_0570 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E XCR_1036 ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_1521 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_1566 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_1599 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_1901 RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_2994 RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_3283 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E XCR_3964 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E XCR_0530 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E XCR_2213 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
E XCR_3173 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
E XCR_2171 RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E XCR_2841 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
E XCR_0862 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E XCR_1074 nusG; transcription termination-antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
E XCR_2594 stringent starvation protein A K03599 sspA; stringent starvation protein A
E XCR_2593 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
E XCR_1405 sigma-B negative effector K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E XCR_1404 negative regulator of sigma-B K17762 rsbS; rsbT antagonist protein RsbS
E XCR_1403 positive regulator of sigma-B K17763 rsbR; rsbT co-antagonist protein RsbR
E XCR_3931 IcfG protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D Transcription elongation factors
E XCR_2525 DnaK supressor K06204 dksA; RNA polymerase-binding transcription factor
E XCR_2097 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E XCR_2901 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E XCR_0522 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 17, 2025