+E Ribosome biogenesis KO
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Ribosome Biogenesis - Xanthomonas citri pv. citri MN11
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D J163_01465 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D J163_00492 Serine/threonine protein kinase involved in cell cycle control K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D J163_02186 Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C J163_01466 GTP-binding protein Era K03595 era; GTPase
C J163_01388 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C J163_02514 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C J163_02851 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C J163_00871 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C J163_01082 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D J163_03835 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D J163_00986 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D J163_03949 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D J163_03836 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D J163_02689 16S rRNA m(2)G-966 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D J163_03230 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D J163_04293 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D J163_00893 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D J163_00887 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D J163_01716 23S rRNA Gm-2251 2'-O-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D J163_01874 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D J163_02940 rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D J163_04497 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D J163_03022 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D J163_01742 23S rRNA m(2)G-2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D J163_01012 putative SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D J163_02163 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D J163_01469 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D J163_04453 Pseudouridylate synthase, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D J163_02475 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D J163_01136 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D J163_02260 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D J163_03377 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D J163_00405 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D J163_03286 16S rRNA uridine-516 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D J163_02976 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D J163_03474 rRNA methylase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C J163_03720 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C J163_03253 [SSU ribosomal protein S5P]-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C J163_03417 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C J163_01431 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C J163_02900 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C J163_00644 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C J163_02891 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C J163_01685 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C J163_01465 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C J163_02259 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
C J163_02935 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
C J163_03077 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C J163_02546 Superfamily II DNA and RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C J163_02978 ATP-dependent RNA helicase CsdA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C J163_01466 GTP-binding protein Era K03595 era; GTPase
C J163_03655 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C J163_02168 ribosome-associated GTPase EngA K03977 engA; GTPase
C J163_01388 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C J163_01879 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C J163_03958 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C J163_03552 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C J163_02849 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C J163_02852 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C J163_02981 hypothetical protein K14761 rlbA; ribosome-associated protein
C J163_02942 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C J163_02624 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
C J163_01873 putative RNA-binding protein, YhbY family K07574 yhbY; RNA-binding protein
C J163_02931 hypothetical protein K09889 yjgA; ribosome-associated protein
C J163_03133 SSU ribosomal protein S30P/sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C J163_01075 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C J163_01252 putative metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024