+E Transcription factors KO #

  Transcription Factors - Xanthomonas campestris pv. vesicatoria

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D XCV2286 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D XCV2345 putative cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D XCV2405 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D XCVd0145 putative cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D XCV0368 pobR; transcriptional regulator PobR, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D XCV1858 putative transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D XCV3312 putative transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D XCV3573 putative transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D XCV2189 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D XCV2983 ada; DNA methylation and regulatory protein (methylated-DNA--[protein]-cysteine S-methyltransferase) K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D XCV2354 gcvA; transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D XCV2948 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D XCV0915 transcriptional regulator LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D XCV0342 metR; transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D XCV2178 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D XCV1572 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XCV0941 oxyR; transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XCV3264 iciA; transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D XCV4252 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D XCV3294 ampR; transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D XCV1538 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D XCV2870 trpI; TrpBA operon transcriptional regulator, LysR family K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D XCV0375 glpR; transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D XCV1598 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV0151 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV0769 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV3427 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV4332 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV2511 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV4373 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XCV2678 fruR; transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D XCV1682 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D XCV0767 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D XCV0912 transcriptional regulator, GntR family K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D XCV0258 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D XCV3589 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D XCV2431 putative transcriptional regulator, TetR family K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D XCV1182 putative transcriptional regulator, TetR family K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D XCV4054 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D XCV3810 lrp; Leucine-responsive regulatory protein, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D XCV0158 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D XCV3135 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA C MarR family D XCV1704 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D XCV4403 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D XCV1512 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D XCV0289 ohrR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D XCV3149 soxR; transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D XCV2335 transcriptional regulator, MerR family K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes C Fur family D XCV1560 fur; Ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D XCV3006 zur; Zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D XCV0387 pcaR; transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D XCV0519 clp; CAP-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D XCV1871 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D XCV2337 transcriptional regulator, ArsR family K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D XCV1362 putative DNA-binding protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family D XCV1455 putative transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator C Other families D XCV2198 mntR; manganese-dependent transcriptional regulator, MarR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D XCV3481 blaI; BlaI transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D XCV4110 birA; BirA bifunctional protein [Includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] ligase] K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D XCV0556 putative transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D XCV1155 prpR; Propionate catabolism regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D XCV2014 fleQ; flagellar sigma-54 dependent transcriptional activator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D XCV0715 sigma-54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D XCV4471 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator D XCV4146 putative DNA binding protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D XCV4008 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D XCV0787 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D XCV2513 conserved hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D XCV4019 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D XCVd0003 parB; Chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D XCVd0002 repB; Replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D XCV1562 hrcA; heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor D XCV1790 gcvR; glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor D XCV0940 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D XCV2415 putative regulatory protein, AlpA family K07733 alpA; prophage regulatory protein D XCV2483 putative regulatory protein, AlpA family K07733 alpA; prophage regulatory protein D XCV2621 putative DNA-binding protein K07733 alpA; prophage regulatory protein D XCV2219 conserved hypothetical protein K07733 alpA; prophage regulatory protein D XCV1656 transcriptional regulator, PaiB family K07734 paiB; transcriptional regulator D XCV3063 conserved hypothetical protein K07735 algH; putative transcriptional regulator D XCV2556 dksA; DnaK supressor K06204 dksA; RNA polymerase-binding transcription factor D XCV0796 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D XCV0822 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0