+E Transcription factors KO
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Transcription Factors - Xanthomonas dyei
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D NYR95_16195 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D NYR95_02045 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D NYR95_16800 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D NYR95_18130 helix-turn-helix domain-containing protein K07506 K07506; AraC family transcriptional regulator
D NYR95_15240 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D NYR95_15115 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NYR95_05085 LysR substrate-binding domain-containing protein K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D NYR95_05215 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NYR95_09095 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NYR95_17430 LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D NYR95_21915 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D NYR95_16695 ampR; LysR family transcriptional regulator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D NYR95_19655 LysR substrate-binding domain-containing protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NYR95_14710 LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D NYR95_02075 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D NYR95_00955 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_04200 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_09225 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_12505 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_17280 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_22295 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_22450 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR95_13700 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D NYR95_09640 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D NYR95_04190 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D NYR95_02085 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D NYR95_05070 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D NYR95_01450 TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D NYR95_01890 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D NYR95_13665 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D NYR95_18230 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D NYR95_20815 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D NYR95_11770 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D NYR95_01000 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NYR95_19315 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D NYR95_07930 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
C MarR family
D NYR95_18650 MarR family winged helix-turn-helix transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D NYR95_22675 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D NYR95_08825 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D NYR95_01595 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D NYR95_07860 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D NYR95_09035 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NYR95_15390 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D NYR95_02140 helix-turn-helix domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D NYR95_02930 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NYR95_10605 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
C XRE family
D NYR95_07640 short-chain fatty acyl-CoA regulator family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
D NYR95_08515 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D NYR95_12285 mntR; manganese-binding transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D NYR95_17565 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D NYR95_21130 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NYR95_03120 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYR95_06230 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D NYR95_11310 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D NYR95_03925 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NYR95_21330 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D NYR95_20555 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D NYR95_18575 metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D NYR95_12510 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NYR95_20635 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NYR95_09045 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D NYR95_10255 glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor
D NYR95_05210 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D NYR95_13385 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D NYR95_09510 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D NYR95_15685 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D NYR95_12785 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYR95_04490 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NYR95_04630 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0