+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Xiphophorus hellerii (green swordtail)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 116730926 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 116734325 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 116730389 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 116734391 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 116718047 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 116718154 ramac; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 116714634 ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 116716462 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 116718911 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 116737164 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 116718103 cleavage and polyadenylation specificity factor subunit 7-like K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 116714775 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 116728138 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 116731254 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 116734271 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 116734230 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116708767 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116709618 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116735993 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 116725895 pre-mRNA 3'-end-processing factor FIP1-like K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 116719720 pre-mRNA 3'-end-processing factor FIP1-like isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 116721458 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 116710313 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 116732387 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 116727196 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 116735161 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 116729364 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 116708908 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 116710710 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 116709886 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 116714482 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 116718820 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 116723196 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 116710826 small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 116725085 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 116733857 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 116709746 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 116710287 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 116737038 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 116724181 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 116731327 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 116713936 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 116734271 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 116734230 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116708767 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116709618 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 116714482 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 116723196 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
E 116714261 slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 116728785 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 116733621 casp8ap2; LOW QUALITY PROTEIN: CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 116727913 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 116737518 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 116732443 mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 116720696 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 116711883 mettl4; N(6)-adenine-specific DNA methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 116708147 mettl16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 116734464 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 116717664 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 116710707 RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 116726413 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 116709749 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 116715783 zinc finger CCCH domain-containing protein 13-like K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 116737047 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 116713141 papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 116730136 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 116727315 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 116723662 bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 116718482 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 116718470 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 116720398 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 116711041 LOW QUALITY PROTEIN: TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43
E 116725906 tardbp; LOW QUALITY PROTEIN: TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 116737530 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 116736461 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 116722547 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 116735655 mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 116717438 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 116717825 tent5b; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 116734546 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 116723343 tent5c; terminal nucleotidyltransferase 5C isoform X1 K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 116734539 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 116732016 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 116728381 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 116717842 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 116726164 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 116720493 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 116735660 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 116720183 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 116710986 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 116735810 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 116715941 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 116723689 histone deacetylase complex subunit SAP18-like K14324 SAP18; histone deacetylase complex subunit SAP18
E 116708880 pnn; pinin K13114 PNN; pinin
E 116732127 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 116721541 apoptotic chromatin condensation inducer in the nucleus-like isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 116735840 rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 116709274 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 116721524 thoc1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 116728159 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 116715049 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 116720493 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 116735660 THO complex subunit 4-like isoform X1 K12881 THOC4; THO complex subunit 4
E 116729431 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 116736250 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 116710578 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 116715690 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 116717499 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 116714759 caltractin-like K10840 CETN2; centrin-2
E 116724767 cetn3; centrin-3 K16466 CETN3; centrin-3
E 116723132 mcm3ap; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 116726431 tpr; LOW QUALITY PROTEIN: nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 116721348 nucleoprotein TPR-like isoform X1 K09291 TPR; nucleoprotein TPR
E 116710294 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 116710895 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 116737024 nup37; nucleoporin Nup37 isoform X1 K14302 NUP37; nuclear pore complex protein Nup37
E 116735182 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 116733982 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 116736611 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 116724096 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 116723062 nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 116708067 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 116708446 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 116728157 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 116736904 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 116720225 nup133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 116725015 nup188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 116730827 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 116724833 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 116711009 LOW QUALITY PROTEIN: nuclear pore complex protein Nup160-like K14303 NUP160; nuclear pore complex protein Nup160
E 116735599 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 116723715 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 116730425 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 116719354 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 116724212 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 116728428 nuclear envelope pore membrane protein POM 121-like K14316 POM121; nuclear pore complex protein Nup121
E 116711814 nup58; LOW QUALITY PROTEIN: nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45
E 116730722 nup42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 116721815 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 116717088 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 116723417 E3 SUMO-protein ligase RanBP2-like isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 116708887 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 116727248 aaas; aladin isoform X1 K14320 AAAS; aladin
E 116724767 cetn3; centrin-3 K16466 CETN3; centrin-3
E 116730413 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 116714668 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 116714308 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 116713994 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 116718325 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 116732414 acidic leucine-rich nuclear phosphoprotein 32 family member D-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 116719572 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 116725693 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 116725927 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 116708667 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 116725587 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 116732881 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 116735465 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 116714199 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 116719579 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 116729346 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 116709585 vcpkmt; protein-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 116720040 transportin-2 K18727 TNPO2; transportin-2
E 116735634 transportin-2-like isoform X1 K18727 TNPO2; transportin-2
E 116720396 exportin-1-like K14290 XPO1; exportin-1
E 116713168 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 116724266 xpo7; exportin-7 K18460 XPO7; exportin-7
E 116726821 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
E 116736201 rangap1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 116713326 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 116721486 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 116714321 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 116709615 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 116732903 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 116721596 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 116710633 eif4g3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 116721483 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 116708063 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 116737475 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 116718119 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 116710481 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 116707564 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 116729743 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 116725093 eukaryotic translation initiation factor 4E-binding protein 3-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 116713679 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 116714752 eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 116710102 eif4enif1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 116733990 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 116709226 angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 116725729 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 116732821 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 116714313 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 116725395 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 116714357 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 116728258 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 116709571 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 116725585 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713391 LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 3-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713612 cytoplasmic polyadenylation element-binding protein 3-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116728083 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116714408 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116718456 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116715530 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 116722605 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 116732428 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 116721753 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 116727945 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 116716933 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 116708971 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 116731124 polyadenylate-binding protein 1A-like K13126 PABPC; polyadenylate-binding protein
E 116730191 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 116714615 paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 116732249 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 116731475 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 116709375 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 116714295 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 116724236 denr; density-regulated protein isoform X1 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 116727514 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 116714164 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 116727647 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 116723598 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 116710798 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 116726182 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 116728278 msi2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 116729547 msi1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 116734046 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 116727623 pelo; protein pelota homolog K06965 PELO; protein pelota
E 116711562 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 116718197 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 116723250 ATP-dependent RNA helicase DDX19B-like K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 116710488 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 116736111 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 116718153 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 116717156 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 116718714 larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 116722266 LOW QUALITY PROTEIN: la-related protein 6-like K18733 LARP6; la-related protein 6
E 116728429 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 116714531 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 116729316 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 116724282 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 116736158 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 116709876 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 116717405 leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 116726622 patl2; protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 116714694 etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 116727227 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 116735704 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 116721258 regulator of nonsense transcripts 1-like isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 116725133 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 116736840 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 116714147 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 116722820 regulator of nonsense transcripts 3A-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 116714879 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 116728773 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 116729847 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 116707847 ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 116720335 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116713334 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116714047 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116714287 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116729406 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116724556 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 116722648 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 116708646 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 116709135 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 116732558 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116733843 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116712907 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116712909 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116734151 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116708527 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 116709639 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 116735924 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 116717218 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 116728389 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 116720924 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 116716555 protein SMG8-like K18734 SMG8; protein SMG8
E 116716557 LOW QUALITY PROTEIN: protein SMG8-like K18734 SMG8; protein SMG8
E 116717298 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 116732428 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 116721753 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 116729304 secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 116718445 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 116708108 dhx34; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 116720327 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 116735564 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 116724509 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 116711171 myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 116708156 LOW QUALITY PROTEIN: unconventional myosin-Va-like K10357 MYO5; myosin V
E 116723953 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 116718078 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 116725184 unconventional myosin-Vb-like K10357 MYO5; myosin V
E 116718621 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 116736504 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 116730435 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 116710547 LOW QUALITY PROTEIN: protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 116709028 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 116719700 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 116735266 actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 116730629 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 116717928 mbp; myelin basic protein K17269 MBP; myelin basic protein
E 116717930 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 116710595 desmin-like K07606 VIM; vimentin
E 116722194 LOW QUALITY PROTEIN: vimentin-like K07606 VIM; vimentin
E 116714282 low molecular weight neuronal intermediate filament-like K07606 VIM; vimentin
E 116708694 metallothionein K14739 MT1_2; metallothionein 1/2
E 116712209 myc; myc proto-oncogene protein isoform X1 K04377 MYC; Myc proto-oncogene protein
E 116721002 transcriptional regulator Myc-B-like isoform X1 K04377 MYC; Myc proto-oncogene protein
E 116710401 transcriptional regulator Myc-2-like K04377 MYC; Myc proto-oncogene protein
E 116711129 transcriptional regulator Myc-2-like K04377 MYC; Myc proto-oncogene protein
E 116727203 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 116729197 T-box-containing protein TBX6L-like isoform X1 K10180 TBX6; T-box protein 6
E 116723952 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 116711726 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 116714710 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 116708615 nanos homolog 1-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 116719562 khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 116721315 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 116729588 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 116724264 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 116711642 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 116719987 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 116713107 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 116731907 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 116731908 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 116713880 eef1g; LOW QUALITY PROTEIN: elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 116731421 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 116732245 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 116721593 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 116707819 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 116711778 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 116710082 stau1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 116731105 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 116725708 polypyrimidine tract-binding protein 1-like K13218 PTBP1; polypyrimidine tract-binding protein 1
E 116708915 ptbp1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 116725585 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713391 LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 3-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713612 cytoplasmic polyadenylation element-binding protein 3-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116728083 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116714408 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116718456 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 116725729 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 116732821 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 116714313 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 116725395 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 116714357 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 116727659 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 116710093 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 116712847 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 116728454 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 116715510 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 116723139 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 116709751 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 116718801 caprin-1-like isoform X1 K18743 CAPRIN1; caprin-1
E 116733217 caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 116717260 caprin-2-like isoform X1 K18744 CAPRIN2; caprin-2
E 116725382 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 116721767 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 116717221 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 116717222 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 116730694 protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 116731188 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 116731803 protein argonaute-3-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 116713326 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 116721486 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 116714321 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 116709615 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 116721258 regulator of nonsense transcripts 1-like isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 116725133 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 116715530 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 116722605 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 116737485 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 116730839 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 116721685 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 116716670 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 116729892 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 116721449 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 116711056 protein LSM14 homolog B-like K18749 LSM14; protein LSM14
E 116719145 lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 116722592 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 116731716 protein LSM14 homolog A-like isoform X1 K18749 LSM14; protein LSM14
E 116727659 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 116710093 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 116725382 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 116732129 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 116717713 limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 116718488 wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 116721814 mov10; helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 116710202 putative helicase mov-10-B.2 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 116724914 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 116716961 proline-rich nuclear receptor coactivator 2-like K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 116724870 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 116735924 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 116717218 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 116728389 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 116720924 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 116707830 mRNA decay activator protein ZFP36-like K15308 TTP; tristetraprolin
E 116713139 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 116707515 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 116708189 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 116709053 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 116734692 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 116717623 lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 116720571 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 116737093 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 116713499 bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 116714969 protein bicaudal C homolog 1-like isoform X1 K18756 BICC1; protein bicaudal C
E 116727647 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 116723598 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 116725606 prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 116719583 prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 116727897 cAMP-dependent protein kinase catalytic subunit alpha-like K04345 PKA; protein kinase A [EC:2.7.11.11]
E 116736298 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 116727804 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 116709046 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 116726994 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 116729747 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 116723992 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 116725134 dcp1a; LOW QUALITY PROTEIN: mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 116736852 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 116729524 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 116725720 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 116710964 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 116726135 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 116711474 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 116719326 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 116725159 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 116736741 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 116732309 klc2; kinesin light chain 2 isoform X1 K10407 KLC; kinesin light chain
E 116713281 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 116708599 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 116716684 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 116737699 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 116711171 myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 116708156 LOW QUALITY PROTEIN: unconventional myosin-Va-like K10357 MYO5; myosin V
E 116723953 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 116718078 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 116725184 unconventional myosin-Vb-like K10357 MYO5; myosin V
E 116712628 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 116715516 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 116722864 tubulin alpha chain K07374 TUBA; tubulin alpha
E 116715863 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 116722866 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 116722867 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 116716982 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 116724220 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 116718175 tubulin alpha-1B chain-like isoform X1 K07374 TUBA; tubulin alpha
E 116718187 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 116725206 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 116725234 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 116725369 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 116725370 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 116725585 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713391 LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 3-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116713612 cytoplasmic polyadenylation element-binding protein 3-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116728083 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116714408 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116718456 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 116728258 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 116709571 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 116719617 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 116727048 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 116734998 trinucleotide repeat-containing gene 6C protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 116735279 trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 116735530 tnrc6a; trinucleotide repeat-containing gene 6A protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 116731074 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 116734304 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 116736856 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 116717385 cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 116731217 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 116735976 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 116714155 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 116729626 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 116728263 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 116714571 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 116719144 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 116722118 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 116714296 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 116711621 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 116727169 protein Tob1-like K14443 TOB; protein Tob/BTG
E 116728275 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 116735515 protein Tob1-like K14443 TOB; protein Tob/BTG
E 116735907 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 116728893 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 116737184 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 116717740 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 116710102 eif4enif1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 116719961 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 116709962 edc3; LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 116730846 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 116719596 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 116736840 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 116714147 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 116722820 regulator of nonsense transcripts 3A-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 116719401 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 116713422 probable E3 ubiquitin-protein ligase TRIML1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 116731737 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 116713881 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 116713488 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 116713793 interferon-induced, double-stranded RNA-activated protein kinase-like isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 116725655 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 116728012 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 116711698 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 116728351 YTH domain-containing family protein 1-like K20102 YTHDF; YTH domain-containing family protein
E 116709414 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 116710275 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 116713006 tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 116729751 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 116723999 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 116727945 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 116716933 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 116708971 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 116731124 polyadenylate-binding protein 1A-like K13126 PABPC; polyadenylate-binding protein
E 116711778 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 116710082 stau1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 116725729 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 116732821 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 116714313 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 116725693 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 116725927 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 116708667 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 116714243 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 116719776 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 116737692 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 116719525 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 116732903 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 116721596 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 116720183 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 116710481 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 116710633 eif4g3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 116721483 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 116708063 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 116737475 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 116718119 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 116718992 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 116712103 rps6ka3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 116713917 rps6ka6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 116709110 ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 116714908 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 116723863 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 116730282 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 116724978 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 116714668 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 116722788 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 116718994 tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 116712363 uncharacterized protein LOC116712363 K18763 LARP4; la-related protein 4
E 116726662 larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 116721740 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 116710047 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 116725134 dcp1a; LOW QUALITY PROTEIN: mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 116736852 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 116723992 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 116737485 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 116730839 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 116709962 edc3; LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 116730846 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 116719961 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 116729524 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 116725720 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 116710964 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 116726135 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 116711474 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 116719326 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 116725159 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 116736741 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 116721767 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 116733894 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 116720536 U8 snoRNA-decapping enzyme-like isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 116714962 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 116719828 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 116720672 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 116723773 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 116714606 exosc3; exosome complex component RRP40 isoform X1 K03681 RRP40; exosome complex component RRP40
E 116721777 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 116707576 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 116731302 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 116730797 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 116728223 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 116719735 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 116713287 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 116718825 DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 116731644 LOW QUALITY PROTEIN: DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 116725852 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 116712520 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 116731756 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 116730809 terminal nucleotidyltransferase 4A-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 116717768 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 116718544 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 116720451 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 116714438 LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
E 116724306 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 116731475 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 116729106 ttc37; LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 116707818 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 116714155 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 116729626 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 116731074 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 116734304 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 116736856 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 116717385 cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 116731217 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 116735976 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 116728263 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 116714571 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 116723687 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 116717090 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 116714296 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 116711621 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 116720428 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 116708186 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 116727169 protein Tob1-like K14443 TOB; protein Tob/BTG
E 116728275 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 116735515 protein Tob1-like K14443 TOB; protein Tob/BTG
E 116735907 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 116728893 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 116737184 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 116717740 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 116719974 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 116714362 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 116737025 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 116720631 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 116714962 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 116710818 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 116707820 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 116719828 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 116712878 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 116713347 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 116709443 nrde2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 116718398 samd4a; protein Smaug homolog 1 K27396 SMG; protein Smaug
E 116737508 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 116732753 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 116728392 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 116716138 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 116717779 endoribonuclease ZC3H12A-like K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 116722831 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 116711448 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 116727965 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 116732020 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116726128 eno1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116734008 LOW QUALITY PROTEIN: beta-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116717435 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116709910 LOW QUALITY PROTEIN: alpha-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116731102 gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 116712833 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 116711067 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 116711500 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 116726676 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 116720894 pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 116723370 ATP-dependent 6-phosphofructokinase, liver type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 116714745 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 116722520 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 116723773 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 116720672 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 116721777 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 116730797 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024