+D Transcription factors KO
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Transcription Factors - Xenorhabdus hominickii
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C NAC
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D A9255_20570 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D A9255_02795 AraC family transcriptional regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D A9255_11890 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D A9255_00005 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D A9255_10870 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D A9255_16200 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D A9255_18145 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D A9255_14270 transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D A9255_12035 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D A9255_14665 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D A9255_11005 transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D A9255_11220 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D A9255_05655 transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D A9255_13435 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D A9255_13285 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D A9255_14325 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D A9255_15845 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D A9255_14045 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A9255_15420 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A9255_14745 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D A9255_11200 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D A9255_06730 transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D A9255_12955 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D A9255_01400 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D A9255_06475 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D A9255_11050 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D A9255_13495 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D A9255_10340 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D A9255_11400 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D A9255_15065 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D A9255_09790 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D A9255_14655 DNA-binding transcriptional regulator FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D A9255_09280 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D A9255_15375 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D A9255_08905 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D A9255_11450 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D A9255_16735 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D A9255_06700 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D A9255_10035 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
D A9255_19655 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D A9255_14415 zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D A9255_20465 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D A9255_09805 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D A9255_18520 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D A9255_18475 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D A9255_16535 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D A9255_04955 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D A9255_00895 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D A9255_13845 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D A9255_12645 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D A9255_04465 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D A9255_14595 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D A9255_17070 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D A9255_11875 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D A9255_00220 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D A9255_01230 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A9255_12240 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D A9255_12590 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A9255_12730 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A9255_13740 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D A9255_18865 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A9255_20135 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A9255_11235 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D A9255_11855 trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D A9255_07970 hypothetical protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D A9255_03730 Fis family transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator
D A9255_09460 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D A9255_02720 transcriptional regulator K07726 K07726; putative transcriptional regulator
D A9255_00960 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
D A9255_07965 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D A9255_14730 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D A9255_02365 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D A9255_11505 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D A9255_19095 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D A9255_13750 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D A9255_05500 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D A9255_06605 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D A9255_03360 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D A9255_15715 phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D A9255_06635 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D A9255_06620 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D A9255_16415 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor
D A9255_17215 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D A9255_00370 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D A9255_00375 transcriptional regulator K07733 alpA; prophage regulatory protein
D A9255_01335 transcriptional regulator K07733 alpA; prophage regulatory protein
D A9255_03465 hypothetical protein K07733 alpA; prophage regulatory protein
D A9255_08585 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A9255_10570 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A9255_12690 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A9255_18825 transcriptional regulator K07733 alpA; prophage regulatory protein
D A9255_20095 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A9255_10480 hypothetical protein K07735 algH; putative transcriptional regulator
D A9255_19515 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D A9255_11665 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D A9255_10305 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D A9255_13485 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR
D A9255_05065 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D A9255_18590 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D A9255_11195 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: October 1, 2025
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Classification taken and modified from TRANSFAC 7.0