+E Transcription factors KO #

  Transcription Factors - Xanthomonas phaseoli

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D XppCFBP6546_10045 XppCFBP6546P_10045; helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D XppCFBP6546_16970 XppCFBP6546P_16970; helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator D XppCFBP6546_01715 XppCFBP6546P_01715; helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator D XppCFBP6546_21755 XppCFBP6546P_21755; DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D XppCFBP6546_21915 XppCFBP6546P_21915; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D XppCFBP6546_07110 XppCFBP6546P_07110; LysR family transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D XppCFBP6546_10205 XppCFBP6546P_10205; LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D XppCFBP6546_01675 XppCFBP6546P_01675; LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D XppCFBP6546_03785 XppCFBP6546P_03785; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XppCFBP6546_06970 XppCFBP6546P_06970; LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XppCFBP6546_03280 XppCFBP6546P_03280; LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D XppCFBP6546_24055 XppCFBP6546P_24055; LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D XppCFBP6546_03435 ampR; LysR family transcriptional regulator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D XppCFBP6546_03930 XppCFBP6546P_03930; LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D XppCFBP6546_22310 XppCFBP6546P_22310; LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D XppCFBP6546_10015 XppCFBP6546P_10015; DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D XppCFBP6546_11095 XppCFBP6546P_11095; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_08035 XppCFBP6546P_08035; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_01460 XppCFBP6546P_01460; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_12910 XppCFBP6546P_12910; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_13210 XppCFBP6546P_13210; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_17670 XppCFBP6546P_17670; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_03635 XppCFBP6546P_03635; LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XppCFBP6546_00580 XppCFBP6546P_00580; LacI family DNA-binding transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D XppCFBP6546_18510 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D XppCFBP6546_08045 XppCFBP6546P_08045; GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D XppCFBP6546_07125 XppCFBP6546P_07125; GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D XppCFBP6546_10645 XppCFBP6546P_10645; TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D XppCFBP6546_13765 XppCFBP6546P_13765; TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D XppCFBP6546_16885 XppCFBP6546P_16885; TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D XppCFBP6546_05765 XppCFBP6546P_05765; TetR/AcrR family transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D XppCFBP6546_14715 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D XppCFBP6546_15865 XppCFBP6546P_15865; Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D XppCFBP6546_11055 XppCFBP6546P_11055; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D XppCFBP6546_20815 XppCFBP6546P_20815; LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA C MarR family D XppCFBP6546_12645 XppCFBP6546P_12645; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D XppCFBP6546_18610 XppCFBP6546P_18610; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D XppCFBP6546_04065 XppCFBP6546P_04065; MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D XppCFBP6546_10475 XppCFBP6546P_10475; MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D XppCFBP6546_20725 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D XppCFBP6546_03845 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D XppCFBP6546_21625 XppCFBP6546P_21625; transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D XppCFBP6546_09955 XppCFBP6546P_09955; helix-turn-helix domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D XppCFBP6546_09340 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D XppCFBP6546_19925 XppCFBP6546P_19925; helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family C XRE family D XppCFBP6546_04905 XppCFBP6546P_04905; DUF2083 domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family D XppCFBP6546_04415 XppCFBP6546P_04415; PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D XppCFBP6546_01760 mntR; manganese-binding transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D XppCFBP6546_17430 XppCFBP6546P_17430; BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D XppCFBP6546_14415 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D XppCFBP6546_09145 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D XppCFBP6546_05905 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D XppCFBP6546_08350 XppCFBP6546P_08350; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D XppCFBP6546_11940 XppCFBP6546P_11940; helix-turn-helix domain-containing protein K02647 cdaR; carbohydrate diacid regulator D XppCFBP6546_14200 XppCFBP6546P_14200; helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D XppCFBP6546_16595 XppCFBP6546P_16595; metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D XppCFBP6546_01450 XppCFBP6546P_01450; BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D XppCFBP6546_14870 XppCFBP6546P_14870; ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D XppCFBP6546_03835 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D XppCFBP6546_19085 XppCFBP6546P_19085; glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor D XppCFBP6546_06980 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D XppCFBP6546_18365 XppCFBP6546P_18365; FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D XppCFBP6546_21320 XppCFBP6546P_21320; YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D XppCFBP6546_01230 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D XppCFBP6546_07715 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D XppCFBP6546_07580 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0