+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Yarrowia lipolytica
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E YALI0C13618g YALI0C13618p K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E YALI0B10758g YALI0B10758p K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E YALI0D04334g YALI0D04334p K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E YALI0E02904g YALI0E02904p K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E YALI0F07865g YALI0F07865p K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E YALI0A13101g YALI0A13101p K12882 NCBP1; nuclear cap-binding protein subunit 1
E YALI0E29293g YALI0E29293p K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E YALI0F14421g YALI0F14421p K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E YALI0F31031g YALI0F31031p K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E YALI0C14476g YALI0C14476p K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E YALI0E03982g YALI0E03982p K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E YALI0C23232g YALI0C23232p K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E YALI0F03817g YALI0F03817p K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E YALI0D14982g YALI0D14982p K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E YALI0E02882g YALI0E02882p K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E YALI0A09834g YALI0A09834p K15541 MPE1; protein MPE1
E YALI0A17424g YALI0A17424p K15542 PFS2; polyadenylation factor subunit 2
E YALI0F21263g YALI0F21263p K14962 WDR82; COMPASS component SWD2
E YALI0A08077g YALI0A08077p K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E YALI0E29307g YALI0E29307p K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E YALI0E30899g YALI0E30899p K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E YALI0F18194g YALI0F18194p K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E YALI0E09174g YALI0E09174p K14407 CSTF2; cleavage stimulation factor subunit 2
E YALI0E09152g YALI0E09152p K14407 CSTF2; cleavage stimulation factor subunit 2
E YALI0D18612g YALI0D18612p K14408 CSTF3; cleavage stimulation factor subunit 3
E YALI0F03883g YALI0F03883p K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E YALI0D14102g YALI0D14102p K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E YALI0A19030g YALI0A19030p K11088 SNRPD3; small nuclear ribonucleoprotein D3
E YALI0D01155g YALI0D01155p K11097 SNRPE; small nuclear ribonucleoprotein E
E YALI0A05423g YALI0A05423p K11098 SNRPF; small nuclear ribonucleoprotein F
E YALI0C23232g YALI0C23232p K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E YALI0F03817g YALI0F03817p K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E YALI0E09174g YALI0E09174p K14407 CSTF2; cleavage stimulation factor subunit 2
E YALI0E09152g YALI0E09152p K14407 CSTF2; cleavage stimulation factor subunit 2
E YALI0F03883g YALI0F03883p K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E YALI0F13354g YALI0F13354p K15171 SUPT4H1; transcription elongation factor SPT4
E YALI0C11561g YALI0C11561p K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E YALI0B03498g YALI0B03498p K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E YALI0C17017g YALI0C17017p K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E YALI0D10329g YALI0D10329p K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
E YALI0F28039g YALI0F28039p K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D YALI0F07238g YALI0F07238p K13102 KIN; DNA/RNA-binding protein KIN17
D YALI0E13794g YALI0E13794p K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E YALI0E02530g YALI0E02530p K12876 RBM8A; RNA-binding protein 8A
E YALI0D26664g YALI0D26664p K12877 MAGOH; protein mago nashi
E YALI0F07909g YALI0F07909p K12881 THOC4; THO complex subunit 4
E YALI0A20867g YALI0A20867p K12881 THOC4; THO complex subunit 4
E YALI0A11157g YALI0A11157p K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E YALI0F02695g YALI0F02695p K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E YALI0D02079g YALI0D02079p K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E YALI0C21131g YALI0C21131p K12878 THOC1; THO complex subunit 1
E YALI0A16588g YALI0A16588p K12879 THOC2; THO complex subunit 2
E YALI0E24827g YALI0E24827p K12880 THOC3; THO complex subunit 3
E YALI0F07909g YALI0F07909p K12881 THOC4; THO complex subunit 4
E YALI0A20867g YALI0A20867p K12881 THOC4; THO complex subunit 4
E YALI0C10824g YALI0C10824p K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E YALI0A10164g YALI0A10164p K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E YALI0C22528g YALI0C22528p K10881 SHFM1; 26 proteasome complex subunit DSS1
E YALI0F26136g YALI0F26136p K11368 ENY2; enhancer of yellow 2 transcription factor
E YALI0A20518g YALI0A20518p K16466 CETN3; centrin-3
E YALI0F27775g YALI0F27775p K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E YALI0F20526g YALI0F20526p K09291 TPR; nucleoprotein TPR
E YALI0E23265g YALI0E23265p K14298 RAE1; mRNA export factor
E YALI0F30151g YALI0F30151p K14004 SEC13; protein transport protein SEC13
E YALI0F24563g YALI0F24563p K14304 NUP85; nuclear pore complex protein Nup85
E YALI0A20702g YALI0A20702p K14308 NUP54; nuclear pore complex protein Nup54
E YALI0B02706g YALI0B02706p K14306 NUP62; nuclear pore complex protein Nup62
E YALI0C22066g YALI0C22066p K14309 NUP93; nuclear pore complex protein Nup93
E YALI0F28281g YALI0F28281p K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E YALI0D08998g YALI0D08998p K14301 NUP107; nuclear pore complex protein Nup107
E YALI0A03883g YALI0A03883p K14300 NUP133; nuclear pore complex protein Nup133
E YALI0F13519g YALI0F13519p K14311 NUP188; nuclear pore complex protein Nup188
E YALI0E02706g YALI0E02706p K14312 NUP155; nuclear pore complex protein Nup155
E YALI0D08294g YALI0D08294p K14303 NUP160; nuclear pore complex protein Nup160
E YALI0D08954g YALI0D08954p K14313 NUP35; nuclear pore complex protein Nup53
E YALI0B02750g YALI0B02750p K14310 NUP205; nuclear pore complex protein Nup205
E YALI0C23166g YALI0C23166p K14307 NUPL1; nucleoporin p58/p45
E YALI0F02409g YALI0F02409p K14315 NDC1; nucleoporin NDC1
E YALI0B16610g YALI0B16610p K14299 SEH1; nucleoporin SEH1
E YALI0E01276g YALI0E01276p K18715 NUP159; nucleoporin NUP159
E YALI0F22473g YALI0F22473p K18716 NUP42; nucleoporin NUP42
E YALI0C22253g YALI0C22253p K18718 NUP60; nucleoporin NUP60
E YALI0A02134g YALI0A02134p K18719 NUP82; nucleoporin NUP82
E YALI0D17886g YALI0D17886p K18720 NUP145; nucleoporin NUP145
E YALI0D15840g YALI0D15840p K18721 NUP1; nucleoporin NUP1
E YALI0C03850g YALI0C03850p K18722 NUP2; nucleoporin NUP2
E YALI0A20518g YALI0A20518p K16466 CETN3; centrin-3
E YALI0B01870g YALI0B01870p K18723 GLE1; nucleoporin GLE1
E YALI0A18007g YALI0A18007p K14284 NXF; nuclear RNA export factor
E YALI0B11132g YALI0B11132p K14285 NXT1_2; NTF2-related export protein 1/2
E YALI0D18810g YALI0D18810p K18724 POM34; nucleoporin POM34
E YALI0D26752g YALI0D26752p K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E YALI0F04730g YALI0F04730p K07936 RAN; GTP-binding nuclear protein Ran
E YALI0D14784g YALI0D14784p K18726 FAF2; FAS-associated factor 2
E YALI0F12155g YALI0F12155p K13525 VCP; transitional endoplasmic reticulum ATPase
E YALI0D13574g YALI0D13574p K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E YALI0F10098g YALI0F10098p K14290 XPO1; exportin-1
E YALI0B12210g YALI0B12210p K14319 RANGAP1; Ran GTPase-activating protein 1
E YALI0D05547g YALI0D05547p K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E YALI0F17864g YALI0F17864p K03259 EIF4E; translation initiation factor 4E
E YALI0D24299g YALI0D24299p K03259 EIF4E; translation initiation factor 4E
E YALI0B20922g YALI0B20922p K03257 EIF4A; translation initiation factor 4A
E YALI0C04620g YALI0C04620p K03260 EIF4G; translation initiation factor 4G
E YALI0E30877g YALI0E30877p K03258 EIF4B; translation initiation factor 4B
E YALI0C21472g YALI0C21472p K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E YALI0E13189g YALI0E13189p K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E YALI0C00539g YALI0C00539p K13126 PABPC; polyadenylate-binding protein
E YALI0B00616g YALI0B00616p K13126 PABPC; polyadenylate-binding protein
E YALI0A11869g YALI0A11869p K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E YALI0B13904g YALI0B13904p K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E YALI0A17380g YALI0A17380p K07575 MCTS; malignant T-cell-amplified sequence
E YALI0D06842g YALI0D06842p K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E YALI0C13860g YALI0C13860p K14411 MSI; RNA-binding protein Musashi
E YALI0B07557g YALI0B07557p K14416 HBS1; elongation factor 1 alpha-like protein
E YALI0B20658g YALI0B20658p K06965 PELO; protein pelota
E YALI0E16500g YALI0E16500p K14396 PABPN1; polyadenylate-binding protein 2
E YALI0E31427g YALI0E31427p K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E YALI0D00561g YALI0D00561p K12867 SYF1; pre-mRNA-splicing factor SYF1
E YALI0F08965g YALI0F08965p K18732 SARNP; SAP domain-containing ribonucleoprotein
E YALI0A13299g YALI0A13299p K11493 RCC1; regulator of chromosome condensation
E YALI0F27489g YALI0F27489p K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E YALI0F02453g YALI0F02453p K03265 ETF1; peptide chain release factor subunit 1
E YALI0B08250g YALI0B08250p K03267 ERF3; peptide chain release factor subunit 3
E YALI0D23881g YALI0D23881p K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E YALI0E24629g YALI0E24629p K14327 UPF2; regulator of nonsense transcripts 2
D Protein phosphatase 2A
E YALI0F14069g YALI0F14069p K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E YALI0A00891g YALI0A00891p K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E YALI0F00836g YALI0F00836p K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E YALI0E00154g YALI0E00154p K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E YALI0E13189g YALI0E13189p K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E YALI0B03410g YALI0B03410p K18737 SHE3; SWI5-dependent HO expression protein 3
E YALI0F17358g YALI0F17358p K14844 PUF6; pumilio homology domain family member 6
E YALI0F27401g YALI0F27401p K18738 HEK; heterogeneous nuclear rnp K-like protein
E YALI0A18161g YALI0A18161p K18738 HEK; heterogeneous nuclear rnp K-like protein
E YALI0C19558g YALI0C19558p K18738 HEK; heterogeneous nuclear rnp K-like protein
E YALI0E00924g YALI0E00924p K18738 HEK; heterogeneous nuclear rnp K-like protein
E YALI0E00176g YALI0E00176p K10357 MYO5; myosin V
E YALI0E16577g YALI0E16577p K18658 ASH1; transcriptional regulatory protein ASH1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E YALI0C09141g YALI0C09141p K03231 EEF1A; elongation factor 1-alpha
E YALI0B12562g elongation factor 1 gamma domain-containing protein K03233 EEF1G; elongation factor 1-gamma
E YALI0C24420g elongation factor 1 gamma domain-containing protein K03233 EEF1G; elongation factor 1-gamma
E YALI0D16467g YALI0D16467p K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E YALI0F13717g YALI0F13717p K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E YALI0C23144g YALI0C23144p K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E YALI0F17864g YALI0F17864p K03259 EIF4E; translation initiation factor 4E
E YALI0D24299g YALI0D24299p K03259 EIF4E; translation initiation factor 4E
E YALI0D23881g YALI0D23881p K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E YALI0C21472g YALI0C21472p K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E YALI0F21032g YALI0F21032p K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E YALI0D13838g YALI0D13838p K18749 LSM14; protein LSM14
E YALI0F01793g YALI0F01793p K18752 TNPO1; transportin-1
E YALI0C08305g YALI0C08305p K04345 PKA; protein kinase A [EC:2.7.11.11]
D P-body specific factors
E YALI0C13310g YALI0C13310p K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E YALI0F15719g YALI0F15719p K12612 DCP1; mRNA-decapping enzyme subunit 1
E YALI0A16775g YALI0A16775p K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E YALI0F08459g YALI0F08459p K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E YALI0B11022g YALI0B11022p K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E YALI0A19756g YALI0A19756p K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E YALI0B14058g YALI0B14058p K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E YALI0F30426g YALI0F30426p K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E YALI0B06534g YALI0B06534p K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E YALI0E00176g YALI0E00176p K10357 MYO5; myosin V
E YALI0E19360g YALI0E19360p K07374 TUBA; tubulin alpha
E YALI0F23045g YALI0F23045p K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E YALI0B22968g YALI0B22968p K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E YALI0E06435g YALI0E06435p K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E YALI0F02101g YALI0F02101p K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E YALI0B15147g YALI0B15147p K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E YALI0B12496g YALI0B12496p K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E YALI0E29403g YALI0E29403p K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E YALI0C14256g YALI0C14256p K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E YALI0E19514g YALI0E19514p K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E YALI0D14410g YALI0D14410p K12615 EDC3; enhancer of mRNA-decapping protein 3
E YALI0E24629g YALI0E24629p K14327 UPF2; regulator of nonsense transcripts 2
E YALI0D11627g YALI0D11627p K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E YALI0C07040g YALI0C07040p K13201 TIA1; nucleolysin TIA-1/TIAR
E YALI0C00539g YALI0C00539p K13126 PABPC; polyadenylate-binding protein
E YALI0B00616g YALI0B00616p K13126 PABPC; polyadenylate-binding protein
E YALI0C08877g YALI0C08877p K15026 EIF2A; translation initiation factor 2A
E YALI0F16115g YALI0F16115p K03253 EIF3B; translation initiation factor 3 subunit B
E YALI0B20922g YALI0B20922p K03257 EIF4A; translation initiation factor 4A
E YALI0F02695g YALI0F02695p K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E YALI0E30877g YALI0E30877p K03258 EIF4B; translation initiation factor 4B
E YALI0C04620g YALI0C04620p K03260 EIF4G; translation initiation factor 4G
E YALI0E20031g YALI0E20031p K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E YALI0A18007g YALI0A18007p K14284 NXF; nuclear RNA export factor
E YALI0E24893g YALI0E24893p K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E YALI0F15719g YALI0F15719p K12612 DCP1; mRNA-decapping enzyme subunit 1
E YALI0C13310g YALI0C13310p K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E YALI0F21032g YALI0F21032p K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E YALI0D14410g YALI0D14410p K12615 EDC3; enhancer of mRNA-decapping protein 3
E YALI0E19514g YALI0E19514p K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E YALI0A16775g YALI0A16775p K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E YALI0F08459g YALI0F08459p K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E YALI0B11022g YALI0B11022p K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E YALI0A19756g YALI0A19756p K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E YALI0B14058g YALI0B14058p K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E YALI0F30426g YALI0F30426p K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E YALI0B06534g YALI0B06534p K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E YALI0C23144g YALI0C23144p K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E YALI0D13750g YALI0D13750p K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E YALI0F31141g YALI0F31141p K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E YALI0E08074g YALI0E08074p K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E YALI0A05995g YALI0A05995p K07573 CSL4; exosome complex component CSL4
E YALI0D05511g YALI0D05511p K03679 RRP4; exosome complex component RRP4
E YALI0E33121g YALI0E33121p K03681 RRP40; exosome complex component RRP40
E YALI0D06776g YALI0D06776p K11600 RRP41; exosome complex component RRP41
E YALI0F20240g YALI0F20240p K12590 RRP46; exosome complex component RRP46
E YALI0E06039g YALI0E06039p K12587 MTR3; exosome complex component MTR3
E YALI0D11000g YALI0D11000p K12589 RRP42; exosome complex component RRP42
E YALI0B14905g YALI0B14905p K12586 RRP43; exosome complex component RRP43
E YALI0B08514g YALI0B08514p K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E YALI0E03630g YALI0E03630p K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E YALI0E04444g YALI0E04444p K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E YALI0F07755g YALI0F07755p K12592 C1D; exosome complex protein LRP1
E YALI0C01309g YALI0C01309p K12594 MPP6; M-phase phosphoprotein 6, fungi type
D TRAMP complex
E YALI0F30525g YALI0F30525p K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E YALI0A17292g YALI0A17292p K12597 AIR1_2; protein AIR1/2
E YALI0D12210g YALI0D12210p K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E YALI0A11869g YALI0A11869p K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E YALI0F00286g YALI0F00286p K12600 SKI3; superkiller protein 3
E YALI0C20339g YALI0C20339p K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E YALI0B15147g YALI0B15147p K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E YALI0F23045g YALI0F23045p K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E YALI0B22968g YALI0B22968p K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E YALI0E06435g YALI0E06435p K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E YALI0F02101g YALI0F02101p K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E YALI0B12496g YALI0B12496p K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E YALI0F03344g YALI0F03344p K12606 RCD1; CCR4-NOT transcription complex subunit 9
E YALI0D20856g YALI0D20856p K12608 CAF16; CCR4-NOT complex subunit CAF16
E YALI0F22165g YALI0F22165p K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E YALI0E29403g YALI0E29403p K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E YALI0C14256g YALI0C14256p K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E YALI0F31141g YALI0F31141p K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E YALI0E08074g YALI0E08074p K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E YALI0A08063g YALI0A08063p K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E YALI0C11429g YALI0C11429p K03685 rnc; ribonuclease III [EC:3.1.26.3]
E YALI0E26939g YALI0E26939p K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E YALI0F16819g YALI0F16819p K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E YALI0D16357g YALI0D16357p K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E YALI0C17347g YALI0C17347p K04043 dnaK; molecular chaperone DnaK
E YALI0F02805g YALI0F02805p K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E YALI0D05511g YALI0D05511p K03679 RRP4; exosome complex component RRP4
E YALI0A05995g YALI0A05995p K07573 CSL4; exosome complex component CSL4
D Cofactors
E YALI0D06776g YALI0D06776p K11600 RRP41; exosome complex component RRP41
E YALI0D11000g YALI0D11000p K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024