+D	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Prokaryotic Defense System - Yersinia pestis Harbin35</h2>
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A<b>CRISPR-Cas system</b>
B  Universal Cas proteins
C    CH55_140 cas1; CRISPR-associated endonuclease Cas1	K15342 cas1; CRISP-associated protein Cas1 
B  Type I CRISPR-Cas system
C    Type I signiture cas proteins
D      CH55_141 cas3f; CRISPR-associated helicase Cas3, subtype I-F/YPEST	K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] 
C    Subtype I-A factors
C    Subtype I-B factors
C    Subtype I-C factors
C    Subtype I-D factors
C    Subtype I-E factors
C    Subtype I-F factors
D      CH55_142 csy1; CRISPR type I-F/YPEST-associated protein Csy1	K19127 csy1; CRISPR-associated protein Csy1 
D      CH55_143 csy2; CRISPR type I-F/YPEST-associated protein Csy2	K19128 csy2; CRISPR-associated protein Csy2 
D      CH55_144 csy3; CRISPR type I-F/YPEST-associated protein Csy3	K19129 csy3; CRISPR-associated protein Csy3 
D      CH55_145 cas6f; CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] 
C    Subtype I-U factors
B  Type II CRISPR-Cas system
C    Type II signiture cas proteins
C    Subtype II-A factors
C    Subtype II-B factors
B  Type III CRISPR-Cas system
C    Type III signiture cas proteins
C    Subtype III-A factors
C    Subtype III-B factors
C    Subtype III-U factors
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A<b>Restriction and modification system (R-M system)</b>
B  Type I R-M system
B  Type II R-M system
C    Restriction endonucleases
C    DNA methyltransferases
D      CH55_2897 dam; DNA adenine methylase family protein	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
D      CH55_646 D12 class N6 adenine-specific DNA methyltransferase family protein	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
D      CH55_4253 DNA methylase family protein	K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] 
B  Type III R-M system
B  Type IV R-M system
C    CH55_2423 AAA domain family protein	K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] 
C    CH55_2422 mcrBC 5-methylcytosine restriction system component family protein	K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC 
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A<b>Toxin-antitoxin system (TA system)</b>
B  Type I TA system
C    Hok-Sok
C    SymE-SymR
D      CH55_2591 toxin SymE, type I toxin-antitoxin system family protein	K19048 symE; toxic protein SymE 
C    Ldr-Rdl
C    TisB-IstR
C    Ibs-Sib
C    ShoB-OhsC
C    RalR-RalA
B  Type II TA system
C    MazF-MazE
C    ChpB-ChpS
C    YhaV-PrlF
C    RelE/StbE-RelB/StbD
D      CH55_3656 plasmid stabilization system family protein	K06218 relE; mRNA interferase RelE/StbE 
C    YafQ-dinJ
D      CH55_2573 relB antitoxin family protein	K07473 dinJ; DNA-damage-inducible protein J 
C    YoeB-YefM
C    HipA-HipB
C    HicA-HicB
D      CH55_4106 hypothetical protein	K18843 hicB; antitoxin HicB 
C    YafO-YafN
C    Hha-TomB
D      CH55_1716 hha; hemolysin expression-modulating protein	K05839 hha; haemolysin expression modulating protein 
D      CH55_1715 biofilm formation regulator YbaJ family protein	K19162 tomB; hha toxicity modulator TomB 
C    PspC-PspB
D      CH55_427 pspC; phage shock protein C	K03973 pspC; phage shock protein C 
D      CH55_428 pspB; phage shock protein B	K03970 pspB; phage shock protein B 
C    CcdB-CcdA
C    ParE-ParD
D      CH55_4324 plasmid stabilization system family protein	K19092 parE1_3_4; toxin ParE1/3/4 
D      CH55_4323 hypothetical protein	K07746 parD1_3_4; antitoxin ParD1/3/4 
C    Doc-Phd
D      CH55_842 death-on-curing family protein	K07341 doc; death on curing protein 
C    HigB-HigA
C    MqsR-MqsA
D      CH55_3658 mqsR; mRNA interferase MqsR	K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin 
D      CH55_3659 mqsA; antitoxin MqsA	K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA 
C    VapC-VapB
C    PezT-PezA
C    YobL-YobK
C    YokI-YokJ
C    YqcG-YqcF
C    YxiD-YxxD
C    FitB-FitA
C    BC_0920-BC_0921
C    Type II TA system related factors
D      CH55_2029 hypothetical protein	K19334 tabA; biofilm protein TabA 
D      CH55_69 yhcH/YjgK/YiaL family protein	K19334 tabA; biofilm protein TabA 
D      CH55_160 bssS family protein	K12148 bssS; biofilm regulator BssS 
D      CH55_2297 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ 
D      CH55_2536 mreB; rod shape-determining protein mreB	K03569 mreB; rod shape-determining protein MreB and related proteins 
D      CH55_2142 parC; DNA topoisomerase IV, A subunit	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] 
D      CH55_2145 parE; DNA topoisomerase IV, B subunit	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] 
D      CH55_4092 gltX; glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] 
B  Type III TA system
C    AbiQ system
B  Type IV TA system
C    YeeV-YeeU
C    CptA-CptB
D      CH55_3643 flavinator of succinate dehydrogenase family protein	K09159 cptB; antitoxin CptB 
B  Type V TA system
C    GhoT-GhoS
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A<b>DNA phosphothiolation system</b>
B  Sulfur modification proteins
C    CH55_597 beta-eliminating lyase family protein	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
C    CH55_1413 iscS; cysteine desulfurase IscS	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
B  DNA phosphorothioation-dependent restriction proteins
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#Last updated: November 7, 2023