+E Transcription factors KO #

  Transcription Factors - Yersinia pestis Pestoides F (biovar Antiqua)

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D YPDSF_0875 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D YPDSF_3639 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D YPDSF_3640 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D YPDSF_1593 cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D YPDSF_1213 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator D YPDSF_3178 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YPDSF_3969 thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D YPDSF_3834 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D YPDSF_1684 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D YPDSF_3502 LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D YPDSF_3406 lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D YPDSF_3160 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D YPDSF_3527 oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D YPDSF_0597 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YPDSF_3105 LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D YPDSF_0915 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D YPDSF_1908 putative LlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D YPDSF_3819 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D YPDSF_0290 lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D YPDSF_3516 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D YPDSF_2374 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D YPDSF_0048 glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D YPDSF_0683 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D YPDSF_3033 deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator C LacI family D YPDSF_0665 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D YPDSF_0396 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1392 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_0861 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1712 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1909 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_3776 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_3798 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D YPDSF_3099 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D YPDSF_0305 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D YPDSF_0760 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D YPDSF_3320 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D YPDSF_1947 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D YPDSF_3266 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D YPDSF_1150 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D YPDSF_1236 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D YPDSF_0988 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D YPDSF_2934 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D YPDSF_2415 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D YPDSF_0363 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D YPDSF_2195 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D YPDSF_2530 TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D YPDSF_2766 tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D YPDSF_3859 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D YPDSF_0768 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D YPDSF_3525 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D YPDSF_3903 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D YPDSF_2320 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_1796 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_2781 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D YPDSF_1872 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_0533 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_0051 maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D YPDSF_0772 MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D YPDSF_2902 MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D YPDSF_2723 regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YPDSF_0158 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D YPDSF_2620 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D YPDSF_3656 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D YPDSF_0176 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D YPDSF_1734 IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D YPDSF_0100 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPDSF_0843 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D YPDSF_2242 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D YPDSF_3595 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D YPDSF_3015 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D YPDSF_1057 hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D YPDSF_3380 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YPDSF_0260 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPDSF_3181 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D YPDSF_2681 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPDSF_3564 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPDSF_3111 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D YPDSF_3190 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YPDSF_0634 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YPDSF_3343 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D YPDSF_2554 molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D YPDSF_3770 conserved hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D YPDSF_3793 transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D YPDSF_1274 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D YPDSF_2795 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D YPDSF_4141 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4149 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4009 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_3390 regulatory protein K05785 rfaH; transcriptional antiterminator RfaH D YPDSF_3566 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D YPDSF_2628 N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor D YPDSF_0865 ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene D YPDSF_0027 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor D YPDSF_0799 transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D YPDSF_2168 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D YPDSF_0790 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D YPDSF_0793 phage shock protein C K03973 pspC; phage shock protein C D YPDSF_3217 transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor D YPDSF_0302 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D YPDSF_0637 regulatory protein K07733 alpA; prophage regulatory protein D YPDSF_1221 transcriptional regulator K07733 alpA; prophage regulatory protein D YPDSF_2604 transcriptional regulator K07733 alpA; prophage regulatory protein D YPDSF_0579 hypothetical protein K07735 algH; putative transcriptional regulator D YPDSF_2959 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YPDSF_2819 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D YPDSF_2852 curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl D YPDSF_3096 hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0