+E Transcription factors KO
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Transcription Factors - Yersinia pseudotuberculosis IP 32953 (serotype I)
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D YPTB1799 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D YPTB2177 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPTB0387 rhaR; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPTB0386 rhaS; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPTB2928 celD; cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPTB1597 ybtA; transcriptional regulator YbtA K05372 ybtA; AraC family transcriptional regulator
D YPTB0599 rob; putative transcriptional activator for resistance to antibiotics, organic solvents and heavy metals (AraC/XylS family) K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D pYV0076 lcrF; putative thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D YPTB0068 bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D YPTB3017 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPTB0144 ilvY; LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPTB0247 metR; lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPTB0614 nhaR; transcriptional activator for cation transport (LysR family) K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPTB0120 oxyR; oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPTB3191 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPTB0673 leuO; putative transcriptional regulator of leucine biosynthesis (LysR family) K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPTB2141 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPTB2533 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPTB0080 possible transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPTB3549 probable lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPTB0131 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D YPTB1353 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPTB3779 glpR; glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPTB3075 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPTB0803 putative deoR-family sugar uptake regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
C LacI family
D YPTB3094 lacI; LacI-like transcriptional regulator. K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPTB3887 putative AraC-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB3044 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB3270 LacI-family regulatory protein. K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB3444 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB2534 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB1610 thuR; putative ThuR, regulatory protein for trehalosemaltose transp... K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTB0100 cytR; LacI family transcriptional repressor, CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPTB0677 fruR; putative transcriptional regulator for the control of carbon and energy metabolism (GalR/LacI family) K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPTB3535 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPTB2300 purR; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPTB3798 gntR; gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPTB2569 putative LacI-family transcriptional regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
C GntR family
D YPTB0517 phnF; putative transcriptional repressor for phosphonate uptake and biodegradation (GntR family) K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPTB1967 hutC; putative GntR-family transcriptional regulatory protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPTB1910 GntR-family putative transcriptional regulatory protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTB2183 putative transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTB2072 fadR; fatty acid metabolism regulatory protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPTB0712 pdhR; transcriptional repressor for pyruvate dehydrogenase complex (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPTB1313 putative transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPTB3480 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPTB2811 putative GntR-family regulatory protein and aminotransferase (MocR family) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D YPTB1197 betI; TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPTB0985 acrR; putative transcriptional repressor for multidrug efflux pump (TetR/AcrR family) K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPTB0043 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator
D YPTB2292 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPTB0122 trmA; TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPTB1213 putative tetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D YPTB0002 asnC; transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPTB1400 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTB2418 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTB0970 ybaO; probable AsnC-family regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D YPTB2500 ypsR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTB3259 yspR; Quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTB3776 malT; maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D YPTB2288 rovA; MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D YPTB0857 emrR; transcriptional repressor of for multidrug resistance pump (MarR family) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
D YPTB1023 cueR; putative merR family copper regulatory protein, cueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPTB3671 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
C Fur family
D YPTB1124 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPTB0371 putative regulatory protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D YPTB3654 repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPTB2367 kdgR; IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D YPTB3729 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPTB2222 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D YPTB2860 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPTB0431 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D YPTB0786 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D YPTB2048 hexR; hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPTB0273 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPTB3577 fiS; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPTB0596 trpR; putative transcriptional repressor for tryptophan biosynthesis (TrpR family) K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPTB0461 sfsB; putative DNA-binding protein K07724 ner; Ner family transcriptional regulator
D YPTB1067 sfsB; putative DNA-binding protein K07724 ner; Ner family transcriptional regulator
D YPTB0667 yabN; putative ABC transporter, periplasmic di-oligopeptide/nickel binding protein K11925 sgrR; SgrR family transcriptional regulator
D YPTB0588 nadR; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPTB3123 Putative DNA binding (HTH) protein. K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPTB2196 putative transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPTB3819 putative regulatory protein K02647 cdaR; carbohydrate diacid regulator
D YPTB1174 modE; molybdenum transport regulatory (repressor) protein ModE K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D YPTB0104 metJ; transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPTB1723 putA; bifunctional PutA protein [includes: proline dehydrogenase an... K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D YPTB0956 bolA; activator of morphogenic pathway (BolA family), important in general stress response K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D pYV0031 sopB; putative plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPTB0263 rfaH; putative regulatory protein K05785 rfaH; transcriptional antiterminator RfaH
D YPTB0459 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D YPTB1117 nagC; putative N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor
D YPTB2190 mlc; putative ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene
D YPTB3920 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D YPTB2262 tyrR; transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPTB2784 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D YPTB2271 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D YPTB2268 pspC; phage shock protein C K03973 pspC; phage shock protein C
D YPTB0553 ydeW; putative transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor
D YPTB3538 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D YPTB3120 putative DNA binding protein K07733 alpA; prophage regulatory protein
D YPTB3208 Conserved hypothetical protein K07735 algH; putative transcriptional regulator
D YPTB0734 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPTB0933 ybaD; conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D YPTB0903 crl; transcriptional regulator of cryptic genes for curli formation and fibronectin binding K11926 crl; sigma factor-binding protein Crl
D YPTB0679 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0