+D GENES KO
#
KEGG Orthology (KO) - Yersinia ruckeri Big Creek 74 (serotype O2)
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:yrb00010]
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D UGYR_08500 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_07385 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_09740 fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D UGYR_07170 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UGYR_09765 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UGYR_01210 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D UGYR_07175 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D UGYR_15615 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_12825 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_09830 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UGYR_01030 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_02315 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_02375 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D UGYR_13280 aceE; pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D UGYR_13285 aceF; pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_02015 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_15625 galM; galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D UGYR_10045 alpha-D-glucose-1-phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_01205 glucose-6-phosphate 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D UGYR_11005 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D UGYR_11145 diacetylchitobiose-6-phosphate hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_00455 aryl-phospho-beta-D-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_03275 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_05330 PTS system glucose-specific transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D UGYR_00315 PTS glucose-specific subunit IIBC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:yrb00020]
D UGYR_15465 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D UGYR_01575 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_13300 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_00440 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D UGYR_15490 2-oxoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D UGYR_15495 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_15505 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D UGYR_15500 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D UGYR_15480 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_15485 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_15470 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D UGYR_15475 sdhD; succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_13910 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D UGYR_01720 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_06395 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D UGYR_11005 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D UGYR_13280 aceE; pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D UGYR_13285 aceF; pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D UGYR_02015 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:yrb00030]
D UGYR_08500 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D UGYR_01040 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D UGYR_15680 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D UGYR_16140 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D UGYR_11085 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D UGYR_07185 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D UGYR_12865 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D UGYR_07145 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D UGYR_12750 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D UGYR_16235 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D UGYR_10145 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D UGYR_12760 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_12170 hypothetical protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D UGYR_00780 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D UGYR_01045 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D UGYR_10850 idnK; gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D UGYR_10740 ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D UGYR_07170 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_09740 fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_07385 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:yrb00040]
D UGYR_12590 5-keto-4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D UGYR_12595 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D UGYR_07885 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D UGYR_07880 altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D UGYR_07875 altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D UGYR_04180 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D UGYR_04185 D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D UGYR_01315 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D UGYR_16130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_16135 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_01880 ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D UGYR_01885 xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D UGYR_01875 araD; ribulose 5-phosphate epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D UGYR_11085 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D UGYR_06350 ribulokinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:yrb00051]
D UGYR_14305 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D UGYR_01715 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D UGYR_15025 mannose-1-phosphate guanyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_07385 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_09740 fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D UGYR_10495 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D UGYR_07365 sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D UGYR_04140 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D UGYR_07170 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UGYR_09765 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UGYR_04135 PTS system fructose-specific transporter subunits IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D UGYR_03035 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D UGYR_03040 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D UGYR_03045 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D UGYR_10490 PTS system mannitol-specific transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D UGYR_02625 2-deoxyglucose-6-phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D UGYR_07360 PTS system glucitol/sorbitol-specific transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D UGYR_07355 srlE; PTS system glucitol/sorbitol-specific transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D UGYR_07350 srlA; PTS system glucitol/sorbitol-specific transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
C 00052 Galactose metabolism [PATH:yrb00052]
D UGYR_15625 galM; galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D UGYR_15630 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D UGYR_15635 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D UGYR_15640 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D UGYR_16130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_16135 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D UGYR_03925 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_07385 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D UGYR_12620 gatY; tagatose-bisphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D UGYR_12555 tagatose-bisphosphate aldolase K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D UGYR_14345 maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D UGYR_12580 PTS mannose transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D UGYR_12565 PTS system N-acetylgalactosamine-specific transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D UGYR_12570 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D UGYR_12575 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D UGYR_12585 N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.-]
D UGYR_12560 sugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:yrb00053]
D UGYR_01315 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D UGYR_01870 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_04860 cmtB; PTS system mannitol-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_01865 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04865 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04870 PTS beta-glucoside transporter subunit IIBC K03475 ulaA; ascorbate PTS system EIIC component
D UGYR_01855 ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D UGYR_01880 ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D UGYR_01885 xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D UGYR_01875 araD; ribulose 5-phosphate epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:yrb00500]
D UGYR_06050 PTS sugar transporter subunit IIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D UGYR_14345 maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D UGYR_16130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_16135 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_10705 bcsA; cellulose synthase K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D UGYR_03270 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D UGYR_03285 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D UGYR_03280 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D UGYR_11145 diacetylchitobiose-6-phosphate hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_00455 aryl-phospho-beta-D-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_03275 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D UGYR_10880 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D UGYR_10885 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D UGYR_10870 glycogen branching protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D UGYR_10890 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D UGYR_10920 maltose phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D UGYR_15005 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D UGYR_10875 glycogen debranching protein K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D UGYR_10925 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D UGYR_05330 PTS system glucose-specific transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D UGYR_08160 PTS system trehalose(maltose)-specific transporter subunits IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D UGYR_08155 trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D UGYR_08500 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D UGYR_14305 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:yrb00620]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_02015 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D UGYR_13280 aceE; pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D UGYR_13285 aceF; pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_07390 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_16460 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_04845 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UGYR_04850 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UGYR_01030 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_02315 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_06625 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D UGYR_08305 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D UGYR_08310 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D UGYR_04945 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D UGYR_00125 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D UGYR_06390 lldD; lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D UGYR_01990 lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D UGYR_15820 lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D UGYR_02240 glyoxalase I K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D UGYR_14115 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D UGYR_16585 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D UGYR_00865 ghrA; bifunctional glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D UGYR_16060 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D UGYR_05420 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_06395 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D UGYR_13910 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D UGYR_01720 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_09645 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D UGYR_11005 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D UGYR_02375 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D UGYR_08655 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D UGYR_13075 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:yrb00630]
D UGYR_08650 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D UGYR_08655 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_15465 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D UGYR_01575 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_13300 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_04695 catalase K03781 katE; catalase [EC:1.11.1.6]
D UGYR_08915 hypothetical protein K03781 katE; catalase [EC:1.11.1.6]
D UGYR_00865 ghrA; bifunctional glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D UGYR_11090 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D UGYR_07095 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D UGYR_07105 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_07100 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D UGYR_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D UGYR_01045 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D UGYR_10530 sulfate ABC transporter substrate-binding protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D UGYR_10535 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D UGYR_10540 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D UGYR_10545 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D UGYR_01295 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D UGYR_00595 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:yrb00640]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_04845 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UGYR_07395 propionate kinase K00932 tdcD; propionate kinase [EC:2.7.2.15]
D UGYR_04850 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_07390 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_16460 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_08285 quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_06625 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D UGYR_08305 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D UGYR_08310 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D UGYR_04945 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D UGYR_15500 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D UGYR_15505 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D UGYR_01575 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_13300 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_08650 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D UGYR_00100 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D UGYR_07585 aldehyde reductase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
D UGYR_12660 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:yrb00650]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D UGYR_15480 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_15485 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_15470 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D UGYR_15475 sdhD; succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_03340 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D UGYR_08215 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D UGYR_07390 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_16460 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D UGYR_02015 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D UGYR_01180 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_09485 acetolactate synthase catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13090 acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13095 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D UGYR_09480 ilvM; acetolactate synthase 2 regulatory subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D UGYR_01175 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D UGYR_03470 3-oxoacyl-ACP reductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:yrb00660]
D UGYR_01180 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_09485 acetolactate synthase catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13090 acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13095 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D UGYR_09480 ilvM; acetolactate synthase 2 regulatory subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D UGYR_01175 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D UGYR_15500 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D UGYR_15505 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D UGYR_13065 isopropylmalate isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D UGYR_13060 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D UGYR_13070 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:yrb00562]
D UGYR_05930 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D UGYR_09765 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:yrb00190]
D UGYR_04800 NADH:ubiquinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D UGYR_04795 NADH dehydrogenase K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D UGYR_04790 NADH:ubiquinone oxidoreductase K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D UGYR_04785 NADH dehydrogenase K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D UGYR_04780 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D UGYR_04775 NADH dehydrogenase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D UGYR_04770 NADH:ubiquinone oxidoreductase K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D UGYR_04765 NADH dehydrogenase K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D UGYR_04760 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D UGYR_04755 hypothetical protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D UGYR_04750 NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D UGYR_04745 NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D UGYR_04740 NADH:ubiquinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D UGYR_00350 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D UGYR_15480 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_15485 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_15470 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D UGYR_15475 sdhD; succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_14480 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D UGYR_14485 hypothetical protein K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D UGYR_14490 cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D UGYR_14495 cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D UGYR_14500 ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D UGYR_00555 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D UGYR_15515 cytochrome d terminal oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D UGYR_00550 ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D UGYR_15520 cytochrome d ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D UGYR_15525 cytochrome bd biosynthesis protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D UGYR_10240 ATP F0F1 synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UGYR_10250 ATP synthase F0F1 subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UGYR_10245 ATP F0F1 synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D UGYR_10235 ATP F0F1 synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UGYR_10255 atpC; ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D UGYR_10220 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D UGYR_10230 ATP F0F1 synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D UGYR_10225 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D UGYR_11930 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D UGYR_05610 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:yrb00710]
D UGYR_07175 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D UGYR_01210 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D UGYR_07170 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_09740 fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D UGYR_07185 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D UGYR_07145 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D UGYR_11210 phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D UGYR_09765 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UGYR_11085 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D UGYR_12865 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D UGYR_09645 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D UGYR_11005 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D UGYR_05420 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:yrb00720]
D UGYR_02015 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D UGYR_02375 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D UGYR_09645 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_13910 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D UGYR_01720 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D UGYR_15480 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_15485 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_15470 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D UGYR_15475 sdhD; succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_15505 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D UGYR_15500 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D UGYR_00440 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D UGYR_01575 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_13300 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D UGYR_06625 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D UGYR_08305 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D UGYR_08310 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D UGYR_04945 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D UGYR_00640 formate dehydrogenase K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D UGYR_01685 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D UGYR_14940 methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D UGYR_09655 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D UGYR_04850 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UGYR_04845 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:yrb00680]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_16005 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D UGYR_10530 sulfate ABC transporter substrate-binding protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D UGYR_10535 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D UGYR_10540 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D UGYR_10545 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D UGYR_00640 formate dehydrogenase K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UGYR_09645 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_07170 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_09740 fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_07385 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D UGYR_04155 cytochrome C K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D UGYR_04160 trimethylamine N-oxide reductase I catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D UGYR_04845 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UGYR_04850 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_02375 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D UGYR_15615 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_12825 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_09830 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D UGYR_07140 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D UGYR_16480 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D UGYR_12775 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:yrb00910]
D UGYR_05440 nitrate reductase K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D UGYR_05435 napB; nitrate reductase K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D UGYR_11115 nitrite reductase K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D UGYR_11110 nirD; nitrite reductase K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D UGYR_16355 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D UGYR_10800 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_07995 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D UGYR_08000 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D UGYR_00140 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D UGYR_08350 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D UGYR_13340 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:yrb00920]
D UGYR_09770 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D UGYR_05350 sulfate/thiosulfate transporter subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D UGYR_05345 cysW; sulfate/thiosulfate transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D UGYR_05340 sulfate/thiosulfate transporter subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D UGYR_13535 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D UGYR_13530 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D UGYR_13540 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D UGYR_11890 adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D UGYR_13505 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D UGYR_13495 cysJ; sulfite reductase subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D UGYR_13500 sulfite reductase subunit beta K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D UGYR_15870 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D UGYR_10910 glpE; thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D UGYR_09805 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D UGYR_05315 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_11205 pyridoxal-5'-phosphate-dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_14580 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_08660 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D UGYR_09675 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:yrb00061]
D UGYR_06625 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D UGYR_08305 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D UGYR_08310 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D UGYR_04945 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D UGYR_00280 acyl carrier protein K02078 acpP; acyl carrier protein
D UGYR_13800 hypothetical protein K02078 acpP; acyl carrier protein
D UGYR_00270 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D UGYR_00265 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D UGYR_05030 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D UGYR_00285 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D UGYR_00275 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D UGYR_00055 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D UGYR_06650 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D UGYR_02140 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:yrb00071]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_14140 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_06915 acyl-ACP synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:yrb00074]
D UGYR_06070 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D UGYR_03970 phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]
D UGYR_00280 acyl carrier protein K02078 acpP; acyl carrier protein
D UGYR_13800 hypothetical protein K02078 acpP; acyl carrier protein
D UGYR_00270 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:yrb00561]
D UGYR_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D UGYR_12665 dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D UGYR_12670 dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D UGYR_12675 dihydroxyacetone kinase K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D UGYR_12660 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D UGYR_09735 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D UGYR_08445 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D UGYR_00260 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D UGYR_07715 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UGYR_07605 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D UGYR_08440 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:yrb00564]
D UGYR_09810 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D UGYR_09190 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D UGYR_10895 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D UGYR_09185 glycerol-3-phosphate dehydrogenase K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D UGYR_09180 glpC; glycerol-3-phosphate dehydrogenase K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D UGYR_08445 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D UGYR_07715 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UGYR_07605 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D UGYR_08440 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D UGYR_09230 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D UGYR_09215 lysophospholipase L2 K01048 pldB; lysophospholipase [EC:3.1.1.5]
D UGYR_09015 ugpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D UGYR_09205 glpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D UGYR_06915 acyl-ACP synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D UGYR_10755 CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D UGYR_06675 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D UGYR_06510 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D UGYR_11695 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D UGYR_03450 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D UGYR_14415 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D UGYR_01585 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D UGYR_06045 hypothetical protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D UGYR_01380 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:yrb00565]
D UGYR_09230 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:yrb00600]
D UGYR_03925 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D UGYR_12610 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D UGYR_15330 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D UGYR_09230 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D UGYR_09230 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:yrb00592]
D UGYR_09230 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:yrb01040]
D UGYR_14845 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D UGYR_14610 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D UGYR_01455 acyl-CoA esterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:yrb00230]
D UGYR_07645 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D UGYR_11030 nudE; adenosine nucleotide hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D UGYR_12760 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_00780 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D UGYR_04925 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D UGYR_08700 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D UGYR_05580 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D UGYR_03005 phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D UGYR_06030 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D UGYR_05575 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D UGYR_14860 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D UGYR_14865 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D UGYR_05520 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D UGYR_00415 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D UGYR_08695 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D UGYR_11200 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UGYR_14675 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UGYR_14750 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D UGYR_13570 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D UGYR_15290 UMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D UGYR_11020 nucleotidase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D UGYR_14740 guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D UGYR_12765 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D UGYR_14295 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D UGYR_14065 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D UGYR_13335 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D UGYR_05805 inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D UGYR_05855 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D UGYR_12820 yjjX; inositol monophosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D UGYR_07285 nucleoside-triphosphate diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D UGYR_14215 xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D UGYR_05800 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D UGYR_13235 guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D UGYR_09990 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D UGYR_04640 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_06435 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_04645 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D UGYR_06440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D UGYR_12215 ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D UGYR_13445 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D UGYR_04820 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D UGYR_04550 prophage protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D UGYR_10000 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D UGYR_05615 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D UGYR_09435 guanosine polyphosphate pyrophosphohydrolase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D UGYR_13465 relA; (p)ppGpp synthetase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D UGYR_09305 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D UGYR_15825 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D UGYR_15420 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D UGYR_11780 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D UGYR_01705 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D UGYR_01785 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D UGYR_06755 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D UGYR_11885 cpdB; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D UGYR_15510 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D UGYR_14725 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D UGYR_13470 mazG; nucleoside triphosphate hydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D UGYR_12980 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D UGYR_13540 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D UGYR_13535 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D UGYR_13530 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:yrb00240]
D UGYR_12950 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D UGYR_12945 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D UGYR_08140 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D UGYR_08145 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D UGYR_00220 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D UGYR_00015 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D UGYR_09920 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D UGYR_01610 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D UGYR_06695 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D UGYR_05855 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D UGYR_13470 mazG; nucleoside triphosphate hydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D UGYR_08260 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D UGYR_07850 metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D UGYR_13475 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D UGYR_16490 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D UGYR_01260 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D UGYR_16105 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D UGYR_14750 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D UGYR_13570 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D UGYR_15290 UMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D UGYR_01825 dUMP phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D UGYR_08985 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D UGYR_14295 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D UGYR_05570 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D UGYR_11885 cpdB; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D UGYR_15510 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D UGYR_06755 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D UGYR_16075 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D UGYR_11120 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D UGYR_12215 ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D UGYR_16110 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D UGYR_04640 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_06435 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_04645 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D UGYR_06440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D UGYR_04820 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D UGYR_04550 prophage protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D UGYR_00300 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D UGYR_09910 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D UGYR_12755 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D UGYR_01325 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D UGYR_06875 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D UGYR_01760 malonic semialdehyde reductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:yrb00250]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_06125 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D UGYR_01230 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D UGYR_16475 ansB; L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D UGYR_10190 asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D UGYR_15285 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D UGYR_04815 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D UGYR_11590 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D UGYR_09625 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D UGYR_09620 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D UGYR_11780 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D UGYR_00415 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D UGYR_08140 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D UGYR_08145 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D UGYR_03340 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D UGYR_08215 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D UGYR_07995 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D UGYR_08000 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D UGYR_10800 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D UGYR_03505 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_12950 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D UGYR_12945 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D UGYR_03350 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_07300 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_10265 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D UGYR_04925 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:yrb00260]
D UGYR_08505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D UGYR_12845 thrA; aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D UGYR_09670 metL; aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D UGYR_10860 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D UGYR_12850 serine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D UGYR_12855 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D UGYR_16345 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D UGYR_00865 ghrA; bifunctional glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D UGYR_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D UGYR_15615 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_12825 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_09830 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D UGYR_07140 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D UGYR_16480 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D UGYR_12775 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D UGYR_01760 malonic semialdehyde reductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D UGYR_09850 2-amino-3-ketobutyrate CoA ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D UGYR_09845 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D UGYR_07095 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D UGYR_07105 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_07100 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D UGYR_06510 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D UGYR_16210 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D UGYR_16205 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D UGYR_03025 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D UGYR_16220 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D UGYR_07405 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D UGYR_09465 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D UGYR_01490 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D UGYR_01495 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:yrb00270]
D UGYR_09805 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D UGYR_05315 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_11205 pyridoxal-5'-phosphate-dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_14580 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D UGYR_16205 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D UGYR_07570 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D UGYR_10775 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D UGYR_16210 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D UGYR_08635 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D UGYR_08995 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D UGYR_07200 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D UGYR_13315 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D UGYR_13320 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D UGYR_00450 acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D UGYR_13440 5'-methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D UGYR_14065 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D UGYR_02670 Free methionine-R-sulfoxide reductase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D UGYR_12415 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UGYR_13980 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D UGYR_08505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D UGYR_12845 thrA; aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D UGYR_09670 metL; aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D UGYR_10860 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D UGYR_12850 serine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D UGYR_08660 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D UGYR_09675 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D UGYR_09475 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D UGYR_13975 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D UGYR_07235 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_15870 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D UGYR_03525 cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D UGYR_11950 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D UGYR_03025 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D UGYR_16220 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D UGYR_05335 cysM; cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D UGYR_07140 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D UGYR_16480 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:yrb00280]
D UGYR_09475 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:yrb00290]
D UGYR_07405 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D UGYR_09465 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D UGYR_13065 isopropylmalate isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D UGYR_13060 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D UGYR_13070 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D UGYR_01180 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_09485 acetolactate synthase catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13090 acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13095 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D UGYR_09480 ilvM; acetolactate synthase 2 regulatory subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D UGYR_09450 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D UGYR_09470 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D UGYR_09475 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D UGYR_10415 avtA; valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D UGYR_04815 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D UGYR_13075 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:yrb00300]
D UGYR_08505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D UGYR_12845 thrA; aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D UGYR_09670 metL; aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D UGYR_10860 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D UGYR_05530 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D UGYR_12940 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D UGYR_06720 dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D UGYR_11165 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D UGYR_05490 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D UGYR_09290 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D UGYR_06925 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D UGYR_13140 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D UGYR_13145 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:yrb00310]
D UGYR_15495 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_03485 lysine decarboxylase LdcC K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]
D UGYR_08215 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D UGYR_16520 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D UGYR_02365 membrane protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:yrb00220]
D UGYR_12220 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D UGYR_09625 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D UGYR_09620 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D UGYR_03325 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D UGYR_03350 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_07300 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_12950 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D UGYR_12945 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D UGYR_10800 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_04815 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D UGYR_06825 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D UGYR_09630 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D UGYR_09635 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D UGYR_11165 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D UGYR_09640 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:yrb00330]
D UGYR_11120 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D UGYR_15900 arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D UGYR_07195 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D UGYR_07255 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D UGYR_07250 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D UGYR_12145 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D UGYR_13320 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D UGYR_13315 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D UGYR_03390 spermidine dehydrogenase K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6]
D UGYR_05585 spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D UGYR_00570 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D UGYR_00580 N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D UGYR_00565 acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D UGYR_00575 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D UGYR_07270 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D UGYR_03505 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D UGYR_14230 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D UGYR_14235 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D UGYR_02970 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:yrb00340]
D UGYR_16180 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D UGYR_16145 phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D UGYR_16155 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D UGYR_16160 hisH; imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D UGYR_16150 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D UGYR_16165 imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_16175 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D UGYR_10610 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D UGYR_10605 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D UGYR_00600 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D UGYR_00610 N-formimino-L-glutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D UGYR_00595 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:yrb00350]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D UGYR_01810 amino acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D UGYR_08215 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:yrb00360]
D UGYR_01810 amino acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D UGYR_01145 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00380 Tryptophan metabolism [PATH:yrb00380]
D UGYR_15495 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_01810 amino acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D UGYR_04695 catalase K03781 katE; catalase [EC:1.11.1.6]
D UGYR_08915 hypothetical protein K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:yrb00400]
D UGYR_02385 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_14035 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_15610 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_11070 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D UGYR_08300 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D UGYR_11510 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D UGYR_11065 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D UGYR_14270 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D UGYR_16485 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D UGYR_05060 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D UGYR_01515 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D UGYR_01510 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D UGYR_01505 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D UGYR_01500 indole-3-glycerol phosphate synthase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D UGYR_01490 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D UGYR_01495 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D UGYR_14040 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D UGYR_05480 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D UGYR_14045 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:yrb00410]
D UGYR_13360 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D UGYR_03340 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D UGYR_03390 spermidine dehydrogenase K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6]
D UGYR_13365 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:yrb00430]
D UGYR_03340 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D UGYR_04850 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UGYR_04845 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:yrb00440]
D UGYR_12195 carbon-phosphorus lyase complex subunit PhnI K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D UGYR_12205 phosphonate C-P lyase K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D UGYR_12200 phnH; carbon-phosphorus lyase complex subunit K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D UGYR_12180 phosphonate ABC transporter ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D UGYR_12175 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D UGYR_12190 carbon-phosphorus lyase complex subunit PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D UGYR_12165 phnP; carbon-phosphorus lyase complex accessory protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:yrb00450]
D UGYR_09675 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D UGYR_07570 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D UGYR_10775 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D UGYR_08635 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D UGYR_08995 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D UGYR_16205 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D UGYR_02335 cysteine sulfinate desulfinase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D UGYR_16420 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D UGYR_13535 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D UGYR_13530 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D UGYR_01245 selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D UGYR_10555 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D UGYR_16095 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:yrb00460]
D UGYR_01230 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D UGYR_16475 ansB; L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D UGYR_10190 asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:yrb00470]
D UGYR_01150 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_08405 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_03225 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_13175 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_03350 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_07300 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_09540 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D UGYR_13155 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D UGYR_02040 L-alanine-DL-glutamate epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D UGYR_03525 cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D UGYR_09290 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D UGYR_06925 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D UGYR_01145 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:yrb00480]
D UGYR_15440 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D UGYR_15430 hypothetical protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D UGYR_15435 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D UGYR_13975 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D UGYR_07235 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D UGYR_12245 multifunctional aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D UGYR_05880 aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D UGYR_00010 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D UGYR_14210 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D UGYR_02180 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_08380 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_16190 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_10780 glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D UGYR_00440 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D UGYR_16140 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D UGYR_01040 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D UGYR_09575 glutathione peroxidase K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D UGYR_12145 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D UGYR_13320 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:yrb00520]
D UGYR_02200 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D UGYR_05330 PTS system glucose-specific transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D UGYR_06055 murQ; N-acetylmuramic acid-6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D UGYR_05375 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D UGYR_05380 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D UGYR_00380 N-acetylglucosamine kinase K28207 nagK; N-acetylglucosamine kinase [EC:2.7.1.59]
D UGYR_15310 PTS N-acetyl glucosamine transporter subunits IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D UGYR_10260 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D UGYR_09405 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D UGYR_08050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D UGYR_08845 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D UGYR_00340 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D UGYR_15330 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D UGYR_15300 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D UGYR_12035 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D UGYR_12580 PTS mannose transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D UGYR_12565 PTS system N-acetylgalactosamine-specific transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D UGYR_12570 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D UGYR_12575 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D UGYR_12585 N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.-]
D UGYR_15305 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D UGYR_10265 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D UGYR_14305 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D UGYR_08500 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D UGYR_01715 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D UGYR_00315 PTS glucose-specific subunit IIBC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_16130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_16135 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_01315 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D UGYR_15630 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D UGYR_15635 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D UGYR_15640 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D UGYR_03035 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D UGYR_03040 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D UGYR_03045 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D UGYR_15025 mannose-1-phosphate guanyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D UGYR_10880 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D UGYR_09390 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D UGYR_14780 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
C 00541 Biosynthesis of various nucleotide sugars [PATH:yrb00541]
D UGYR_10260 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D UGYR_14790 UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.115]
D UGYR_14780 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D UGYR_08090 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D UGYR_00820 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D UGYR_08095 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D UGYR_16540 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D UGYR_05375 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D UGYR_05385 N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D UGYR_09405 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D UGYR_09400 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D UGYR_14145 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D UGYR_06540 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D UGYR_07680 heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D UGYR_09855 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D UGYR_16130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_16135 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D UGYR_01315 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D UGYR_02450 UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D UGYR_02460 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D UGYR_02455 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D UGYR_02445 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D UGYR_09390 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D UGYR_09395 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D UGYR_14785 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D UGYR_09380 TDP-4-oxo-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D UGYR_09385 TDP-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D UGYR_15025 mannose-1-phosphate guanyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:yrb00511]
D UGYR_03925 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D UGYR_15330 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D UGYR_15055 glycoside hydrolase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 00540 Lipopolysaccharide biosynthesis [PATH:yrb00540]
D UGYR_06645 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D UGYR_13195 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D UGYR_06655 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D UGYR_14870 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D UGYR_06640 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D UGYR_16515 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D UGYR_09870 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D UGYR_00185 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D UGYR_01025 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D UGYR_05025 aspartyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D UGYR_04200 membrane protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D UGYR_02225 hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D UGYR_10630 phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D UGYR_03135 phospholipid:lipid A palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D UGYR_02440 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D UGYR_08345 lipid A biosynthesis palmitoleoyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D UGYR_09865 ADP-heptose--LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D UGYR_09860 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D UGYR_12635 lipopolysaccharide biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:yrb00542]
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00550 Peptidoglycan biosynthesis [PATH:yrb00550]
D UGYR_08050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D UGYR_08845 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D UGYR_13170 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D UGYR_13155 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D UGYR_13140 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D UGYR_03225 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_13175 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_13145 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D UGYR_06680 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D UGYR_07705 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_16240 UDP-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_13150 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D UGYR_13165 murG; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D UGYR_07975 mtgA; peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_11035 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D UGYR_13410 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D UGYR_05865 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D UGYR_13160 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_15155 cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_15160 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D UGYR_03120 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_13135 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_15145 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_16215 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_12005 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:yrb00552]
D UGYR_07705 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_16240 UDP-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00543 Exopolysaccharide biosynthesis [PATH:yrb00543]
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D UGYR_09360 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D UGYR_09370 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D UGYR_09805 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:yrb00730]
D UGYR_08740 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D UGYR_05715 hydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D UGYR_08750 molybdopterin-synthase adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D UGYR_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D UGYR_14435 tRNA s(4)U8 sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D UGYR_08765 thiH; thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D UGYR_14420 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D UGYR_08760 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D UGYR_08745 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D UGYR_14410 thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D UGYR_11700 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D UGYR_00335 thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D UGYR_14725 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:yrb00740]
D UGYR_01580 ribA; GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D UGYR_14395 ribD; 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D UGYR_09275 flavin mononucleotide phosphatase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D UGYR_07670 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D UGYR_14400 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D UGYR_02285 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D UGYR_12915 FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D UGYR_08905 fre; FMN reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D UGYR_07645 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D UGYR_00430 phosphatase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D UGYR_04920 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:yrb00750]
D UGYR_02195 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D UGYR_02185 pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D UGYR_07180 gapA; glyceraldehyde-3-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D UGYR_04965 phosphoglycerate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D UGYR_16480 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D UGYR_12995 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D UGYR_06075 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D UGYR_12855 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:yrb00760]
D UGYR_06125 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D UGYR_15590 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D UGYR_13255 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D UGYR_12765 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D UGYR_12785 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D UGYR_14750 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D UGYR_13570 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D UGYR_15290 UMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D UGYR_15175 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D UGYR_13470 mazG; nucleoside triphosphate hydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D UGYR_08730 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D UGYR_06000 NAD synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D UGYR_13920 hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D UGYR_01225 PncA K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D UGYR_00385 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D UGYR_06165 ppnK; inorganic polyphosphate kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D UGYR_09565 pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D UGYR_01895 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D UGYR_01890 pntB; pyridine nucleotide transhydrogenase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D UGYR_08215 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:yrb00770]
D UGYR_01180 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_09485 acetolactate synthase catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13090 acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D UGYR_13095 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D UGYR_09480 ilvM; acetolactate synthase 2 regulatory subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D UGYR_09450 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D UGYR_09470 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D UGYR_13370 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D UGYR_14465 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D UGYR_13365 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D UGYR_08835 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D UGYR_09905 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D UGYR_13470 mazG; nucleoside triphosphate hydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D UGYR_09880 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D UGYR_13230 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D UGYR_06070 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D UGYR_14360 ACP phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D UGYR_09475 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D UGYR_13360 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:yrb00780]
D UGYR_15700 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D UGYR_05030 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D UGYR_00285 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D UGYR_00275 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D UGYR_06650 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D UGYR_02140 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D UGYR_10940 carboxylesterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D UGYR_15695 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D UGYR_15685 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D UGYR_01735 dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D UGYR_15705 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D UGYR_15690 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D UGYR_08840 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:yrb00785]
D UGYR_15135 lipoate--protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D UGYR_15130 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D UGYR_02420 lplA; lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13280 aceE; pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D UGYR_13285 aceF; pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D UGYR_15490 2-oxoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D UGYR_15495 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D UGYR_07095 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D UGYR_07105 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D UGYR_07100 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:yrb00790]
D UGYR_16025 folE; GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D UGYR_00975 nudB; dihydroneopterin triphosphate pyrophosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D UGYR_07710 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D UGYR_13375 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D UGYR_12030 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D UGYR_12970 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D UGYR_04940 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D UGYR_01580 ribA; GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D UGYR_11160 anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D UGYR_03015 pabB; aminodeoxychorismate synthase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D UGYR_00290 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D UGYR_13490 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D UGYR_13485 pyrroloquinoline quinone biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D UGYR_14565 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D UGYR_06750 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D UGYR_15750 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D UGYR_15755 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D UGYR_15765 moaE; molybdopterin guanine dinucleotide biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D UGYR_12870 mogA; molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D UGYR_15995 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D UGYR_10105 mobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:yrb00670]
D UGYR_12970 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D UGYR_01685 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D UGYR_14940 methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D UGYR_05580 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D UGYR_08695 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D UGYR_07105 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D UGYR_08635 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D UGYR_06875 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D UGYR_01295 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D UGYR_09655 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D UGYR_07135 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D UGYR_07200 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D UGYR_07095 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_07100 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D UGYR_16210 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D UGYR_16205 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:yrb00860]
D UGYR_05265 gltX; glutamyl-tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D UGYR_00795 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D UGYR_13415 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D UGYR_08925 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D UGYR_09310 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D UGYR_09315 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D UGYR_08725 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D UGYR_05410 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D UGYR_10070 coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D UGYR_08875 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D UGYR_14730 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D UGYR_09320 uroporphyrin-III methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D UGYR_11100 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D UGYR_13525 sirohydrochlorin ferrochelatase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D UGYR_14480 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D UGYR_01535 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D UGYR_11315 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:yrb00130]
D UGYR_08455 chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D UGYR_08450 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D UGYR_08910 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D UGYR_04920 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D UGYR_07110 oxidoreductase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D UGYR_12120 protease K24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
D UGYR_12115 protease K24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
D UGYR_12125 SCP-2 sterol transfer family protein K24843 ubiT; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) accessory factor UbiT
D UGYR_04635 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D UGYR_07115 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D UGYR_08960 ubiE; ubiquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D UGYR_15250 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D UGYR_04725 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D UGYR_07430 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D UGYR_04720 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D UGYR_04715 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D UGYR_04705 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D UGYR_04700 O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D UGYR_04710 dihydroxynaphthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D UGYR_02360 thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D UGYR_09715 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:yrb00900]
D UGYR_14420 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D UGYR_06685 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D UGYR_13555 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D UGYR_00785 kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D UGYR_13560 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D UGYR_05835 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D UGYR_12935 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D UGYR_04920 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D UGYR_14425 geranyl transferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D UGYR_11970 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D UGYR_06680 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:yrb00907]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D UGYR_07185 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:yrb00523]
D UGYR_09390 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D UGYR_09395 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D UGYR_14785 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:yrb01053]
D UGYR_04725 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D UGYR_07430 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D UGYR_07420 isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D UGYR_07415 2,3-dihydroxybenzoate-2,3-dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D UGYR_03970 phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]
D UGYR_07425 entE; enterobactin synthase subunit E K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
C 01055 Biosynthesis of vancomycin group antibiotics
D UGYR_09395 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:yrb00332]
D UGYR_14230 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D UGYR_14235 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:yrb00261]
D UGYR_07470 antibiotic synthesis protein MbtH K05375 mbtH; MbtH protein
D UGYR_13535 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D UGYR_13530 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D UGYR_08505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D UGYR_12845 thrA; aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D UGYR_09670 metL; aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D UGYR_10860 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D UGYR_05530 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D UGYR_12940 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:yrb00521]
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D UGYR_15365 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D UGYR_05930 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D UGYR_09390 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D UGYR_09395 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D UGYR_14785 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D UGYR_05205 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:yrb00525]
D UGYR_09390 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D UGYR_09395 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:yrb00401]
D UGYR_14040 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D UGYR_01515 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D UGYR_01510 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D UGYR_00270 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D UGYR_00275 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D UGYR_02140 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D UGYR_00280 acyl carrier protein K02078 acpP; acyl carrier protein
D UGYR_13800 hypothetical protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:yrb00999]
D UGYR_07200 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D UGYR_11510 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:yrb00362]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_10745 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D UGYR_05890 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:yrb00627]
D UGYR_00125 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D UGYR_04920 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:yrb00364]
D UGYR_08990 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:yrb00625]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:yrb00361]
D UGYR_08990 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:yrb00623]
D UGYR_08990 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D UGYR_10745 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:yrb00633]
D UGYR_02235 N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:yrb00930]
D UGYR_08895 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D UGYR_05080 fadJ; multifunctional fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D UGYR_10745 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:yrb00626]
D UGYR_16010 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D UGYR_01330 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:yrb00984]
D UGYR_05085 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D UGYR_08900 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:yrb03020]
D UGYR_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UGYR_08770 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UGYR_11450 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UGYR_09995 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:yrb03010]
D UGYR_16495 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D UGYR_06705 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D UGYR_11355 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D UGYR_11445 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D UGYR_11410 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D UGYR_11850 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D UGYR_11300 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D UGYR_11395 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D UGYR_08020 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D UGYR_11320 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D UGYR_11440 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D UGYR_11295 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D UGYR_11435 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D UGYR_11390 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D UGYR_12080 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D UGYR_14000 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D UGYR_11370 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D UGYR_11860 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D UGYR_11345 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D UGYR_12910 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D UGYR_07725 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D UGYR_08790 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D UGYR_11340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D UGYR_11325 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D UGYR_11330 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D UGYR_11385 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D UGYR_11400 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D UGYR_08780 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D UGYR_11865 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D UGYR_08785 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D UGYR_08795 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D UGYR_08025 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D UGYR_11375 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D UGYR_11420 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D UGYR_11360 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D UGYR_11455 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D UGYR_11405 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D UGYR_14015 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D UGYR_02535 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D UGYR_11975 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D UGYR_11350 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D UGYR_11335 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D UGYR_11380 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D UGYR_11980 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D UGYR_09895 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D UGYR_11365 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D UGYR_11415 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D UGYR_09685 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UGYR_14635 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UGYR_00255 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D UGYR_09890 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D UGYR_10360 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D UGYR_02540 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D UGYR_11430 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D UGYR_06535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_09535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_10130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_11520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_14075 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_06525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08680 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_09520 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_10120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_11535 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_14090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_06520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08665 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08675 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08855 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_09515 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_10115 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_11540 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_14095 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:yrb00970]
D UGYR_05275 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_05280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_09525 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_11530 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_14085 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_05150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_09350 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13950 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13960 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_14945 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_03960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_03965 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_04055 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_09510 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_14100 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_14135 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_03440 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D UGYR_15255 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_15265 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_15270 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_06530 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_08685 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_08865 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_10125 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_03445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_07040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_08820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11710 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11715 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11720 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_09345 tRNA-His K14226 tRNA-His; tRNA His
D UGYR_09530 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_11525 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_14080 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_03435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_09340 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12260 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12695 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12700 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_15275 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_03475 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_05240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15570 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15575 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15580 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15585 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_06805 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_06810 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_06815 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_07740 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_12050 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_15260 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_15280 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_07330 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D UGYR_11565 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D UGYR_04285 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_09335 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_10650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_00135 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_00845 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_00855 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_03950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_04600 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_13945 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_04595 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08670 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08815 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_09505 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D UGYR_01285 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_01290 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_08825 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_02300 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_02305 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_02310 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05245 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05250 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05255 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05265 gltX; glutamyl-tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D UGYR_15315 glutamate--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D UGYR_13935 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UGYR_00970 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UGYR_16600 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UGYR_10450 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D UGYR_10455 glyS; glycyl-tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D UGYR_02550 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UGYR_16445 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UGYR_10555 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D UGYR_14880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UGYR_16095 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UGYR_11485 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D UGYR_12235 valyl-tRNA synthase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UGYR_15190 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UGYR_12920 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UGYR_07045 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UGYR_00930 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UGYR_06570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UGYR_05830 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UGYR_02530 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UGYR_02525 pheT; phenylalanine--tRNA ligase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D UGYR_02190 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UGYR_11095 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:yrb03008]
D UGYR_06090 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UGYR_11705 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D UGYR_03200 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:yrb03060]
D UGYR_11425 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D UGYR_08805 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D UGYR_12040 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D UGYR_14380 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D UGYR_14385 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D UGYR_14375 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D UGYR_10345 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UGYR_13210 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UGYR_09815 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D UGYR_13205 Secretion monitor K13301 secM; secretion monitor
D UGYR_13995 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D UGYR_09130 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UGYR_08945 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D UGYR_08940 translocase K03117 tatB; sec-independent protein translocase protein TatB
D UGYR_08935 twin-arginine protein translocation system subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D UGYR_15125 preprotein translocase subunit TatA K03425 tatE; sec-independent protein translocase protein TatE
D UGYR_06095 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D UGYR_12925 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:yrb04122]
D UGYR_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D UGYR_15870 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D UGYR_09165 sulfur transfer protein SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D UGYR_11290 sulfur relay protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D UGYR_11285 protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D UGYR_11280 sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D UGYR_00130 sulfur transfer protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D UGYR_00425 mnmA; tRNA 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D UGYR_15765 moaE; molybdopterin guanine dinucleotide biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D UGYR_15750 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D UGYR_15760 moaD; molybdopterin synthase small subunit K03636 moaD; sulfur-carrier protein
D UGYR_15990 molybdopterin-synthase adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D UGYR_15755 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D UGYR_12870 mogA; molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D UGYR_14435 tRNA s(4)U8 sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D UGYR_08755 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D UGYR_08750 molybdopterin-synthase adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:yrb03018]
D UGYR_06890 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D UGYR_00235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D UGYR_09430 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UGYR_12085 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D UGYR_15800 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D UGYR_11790 exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D UGYR_12095 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D UGYR_09225 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D UGYR_09420 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_12890 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D UGYR_11605 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D UGYR_11755 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D UGYR_05610 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D UGYR_13380 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:yrb03030]
D UGYR_02965 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D UGYR_14130 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D UGYR_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UGYR_14705 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UGYR_00305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UGYR_15180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UGYR_12715 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D UGYR_12240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D UGYR_10370 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UGYR_08410 DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D UGYR_07730 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_14125 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D UGYR_06635 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:yrb03410]
D UGYR_01640 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D UGYR_06155 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D UGYR_07315 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D UGYR_09885 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D UGYR_10440 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D UGYR_01265 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D UGYR_04130 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_07055 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:yrb03420]
D UGYR_00360 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D UGYR_08390 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D UGYR_15715 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D UGYR_03455 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D UGYR_09270 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:yrb03430]
D UGYR_13590 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D UGYR_11745 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D UGYR_06895 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D UGYR_09270 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UGYR_04075 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D UGYR_05810 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D UGYR_14430 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D UGYR_02975 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D UGYR_07055 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UGYR_10370 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UGYR_14705 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UGYR_15180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UGYR_00305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UGYR_14130 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D UGYR_02965 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D UGYR_12240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D UGYR_12715 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_11080 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:yrb03440]
D UGYR_07055 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_10375 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D UGYR_06080 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D UGYR_14715 recR; recombination protein RecR K06187 recR; recombination protein RecR
D UGYR_13925 recA; recombinase A K03553 recA; recombination protein RecA
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_00990 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D UGYR_00995 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D UGYR_00985 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D UGYR_10010 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D UGYR_06835 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D UGYR_06845 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D UGYR_06830 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D UGYR_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UGYR_10370 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UGYR_14705 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UGYR_15180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UGYR_00305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UGYR_14130 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D UGYR_02965 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D UGYR_12240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D UGYR_12715 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D UGYR_09690 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D UGYR_11855 primosomal replication protein N K02686 priB; primosomal replication protein N
D UGYR_14665 prephenate dehydrogenase K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:yrb03250]
D UGYR_11155 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:yrb02010]
D UGYR_09770 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D UGYR_05350 sulfate/thiosulfate transporter subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D UGYR_05345 cysW; sulfate/thiosulfate transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D UGYR_05340 sulfate/thiosulfate transporter subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D UGYR_15660 modA; molybdate transporter K02020 modA; molybdate transport system substrate-binding protein
D UGYR_15665 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D UGYR_15670 modC; molybdate transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D UGYR_03405 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D UGYR_04035 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D UGYR_03410 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D UGYR_04040 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D UGYR_03415 amino acid ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D UGYR_04045 fbpC; ferric transporter ATP-binding subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D UGYR_13045 tbpA; thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D UGYR_13040 thiP; thiamine ABC transporter permease K02063 thiP; thiamine transport system permease protein
D UGYR_13035 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D UGYR_16270 spermidine/putrescine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D UGYR_16285 spermidine/putrescine ABC transporter permease K11074 potI; putrescine transport system permease protein
D UGYR_16280 spermidine/putrescine ABC transporter permease K11075 potH; putrescine transport system permease protein
D UGYR_16275 potG; putrescine transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D UGYR_06455 proX; glycine/betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D UGYR_06450 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D UGYR_06445 glycine/betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D UGYR_15875 ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D UGYR_15880 osmoprotectant uptake system permease K05846 opuBD; osmoprotectant transport system permease protein
D UGYR_15890 osmoprotectant uptake system permease K05846 opuBD; osmoprotectant transport system permease protein
D UGYR_15885 ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D UGYR_08480 malE; sugar ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D UGYR_08485 malF; maltose transporter membrane protein K10109 malF; maltose/maltodextrin transport system permease protein
D UGYR_08490 malG; maltose transporter permease K10110 malG; maltose/maltodextrin transport system permease protein
D UGYR_08470 maltose/maltodextrin transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D UGYR_08065 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D UGYR_07025 ABC transporter permease K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D UGYR_08070 phospholipid ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D UGYR_07035 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D UGYR_08075 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D UGYR_08060 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D UGYR_07030 iron ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D UGYR_08080 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D UGYR_10150 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein
D UGYR_10155 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D UGYR_10160 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D UGYR_10165 D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D UGYR_16040 sugar ABC transporter substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D UGYR_16050 mglC; beta-methylgalactoside transporter permease K10541 mglC; methyl-galactoside transport system permease protein
D UGYR_16045 sugar ABC transporter ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D UGYR_09035 glycerol-3-phosphate ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D UGYR_09030 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D UGYR_09025 glycerol-3-phosphate transporter membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D UGYR_09020 ugpC; glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D UGYR_10270 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_14330 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_05600 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D UGYR_10275 pstC; phosphate transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D UGYR_05595 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D UGYR_10280 pstA; phosphate transporter permease subunit PtsA K02038 pstA; phosphate transport system permease protein
D UGYR_05590 pstB; phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UGYR_10285 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UGYR_15850 phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D UGYR_15855 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D UGYR_15860 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D UGYR_15845 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D UGYR_04905 amino acid ABC transporter permease K10015 hisM; histidine transport system permease protein
D UGYR_04910 amino acid ABC transporter permease K10016 hisQ; histidine transport system permease protein
D UGYR_04900 amino acid transporter K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_04915 histidine ABC transporter substrate-binding protein HisJ K10014 hisJ; histidine transport system substrate-binding protein
D UGYR_15945 glnH; glutamine ABC transporter substrate-bindnig protein K10036 glnH; glutamine transport system substrate-binding protein
D UGYR_15940 glnP; glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein
D UGYR_15935 glnQ; glutamine ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_16300 arginine ABC transporter substrate-binding protein K09996 artJ; arginine transport system substrate-binding protein
D UGYR_16315 arginine ABC transporter substrate-binding protein K09997 artI; arginine transport system substrate-binding protein
D UGYR_16305 artM; arginine transporter permease subunit ArtM K09998 artM; arginine transport system permease protein
D UGYR_16310 arginine transporter permease subunit ArtQ K09999 artQ; arginine transport system permease protein
D UGYR_16320 arginine ABC transporter ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_15215 amino acid transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D UGYR_15205 amino acid ABC transporter permease K10002 gltK; glutamate/aspartate transport system permease protein
D UGYR_15210 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D UGYR_15200 artP; arginine transporter ATP-binding subunit K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_03520 cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D UGYR_03515 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D UGYR_03510 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_09090 leucine ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D UGYR_09085 branched-chain amino acid transporter permease subunit LivH K01997 livH; branched-chain amino acid transport system permease protein
D UGYR_09080 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D UGYR_09075 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein
D UGYR_09070 livF; leucine/isoleucine/valine transporter ATP-binding subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein
D UGYR_06555 metQ; DL-methionine transporter substrate-binding subunit K02073 metQ; D-methionine transport system substrate-binding protein
D UGYR_06550 DL-methionine transporter permease subunit K02072 metI; D-methionine transport system permease protein
D UGYR_06545 metN; DL-methionine transporter ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D UGYR_15710 branched-chain amino acid ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein
D UGYR_01345 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01350 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_02030 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01355 oppB; oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D UGYR_01360 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D UGYR_01365 oppD; oligopeptide transporter ATP-binding component K15583 oppD; oligopeptide transport system ATP-binding protein
D UGYR_01370 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UGYR_10655 peptide ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D UGYR_10660 hypothetical protein K12369 dppB; dipeptide transport system permease protein
D UGYR_10665 peptide transporter K12370 dppC; dipeptide transport system permease protein
D UGYR_10670 dppD; peptide ABC transporter ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D UGYR_10675 dppF; peptide ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D UGYR_02115 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D UGYR_02120 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D UGYR_02125 peptide ABC transporter permease K19228 sapC; cationic peptide transport system permease protein
D UGYR_02130 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D UGYR_02135 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D UGYR_04215 antibiotic ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D UGYR_04220 microcin ABC transporter permease K13894 yejB; microcin C transport system permease protein
D UGYR_04225 microcin ABC transporter permease K13895 yejE; microcin C transport system permease protein
D UGYR_04230 microcin ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D UGYR_07435 iron ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D UGYR_07445 ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D UGYR_07450 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D UGYR_07455 fecE; iron-dicitrate transporter ATP-binding subunit K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D UGYR_13435 Vitamin B12-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D UGYR_02470 vtamin B12-transporter permease K06073 btuC; vitamin B12 transport system permease protein
D UGYR_02465 vitamin B12 ABC transporter ATPase K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D UGYR_01015 znuA; zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D UGYR_01005 znuB; high-affinity zinc transporter membrane component K09816 znuB; zinc transport system permease protein
D UGYR_01010 znuC; zinc ABC transporter ATPase K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D UGYR_02595 iron-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D UGYR_02605 membrane protein K11605 sitC; manganese/iron transport system permease protein
D UGYR_02610 iron ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D UGYR_02600 iron ABC transporter permease K11607 sitB; manganese/iron transport system ATP-binding protein
D UGYR_00365 outer membrane-specific lipoprotein transporter subunit LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein
D UGYR_00375 outer membrane-specific lipoprotein transporter subunit LolE K09808 lolC_E_F; lipoprotein-releasing system permease protein
D UGYR_00370 lolD; lipoprotein ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D UGYR_05130 hemagglutination activity protein K02196 ccmD; heme exporter protein D
D UGYR_05135 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D UGYR_05140 heme ABC transporter permease K02194 ccmB; heme exporter protein B
D UGYR_05145 cytochrome C biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D UGYR_12250 lipopolysaccharide ABC transporter permease K07091 lptF; lipopolysaccharide export system permease protein
D UGYR_12255 lipopolysaccharide ABC transporter permease K11720 lptG; lipopolysaccharide export system permease protein
D UGYR_08110 sugar ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D UGYR_09120 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D UGYR_09125 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D UGYR_16510 lipid transporter ATP-binding/permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D UGYR_14590 multidrug ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D UGYR_14595 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D UGYR_00500 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_09605 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_16410 amino acid ABC transporter permease K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D UGYR_16415 amino acid ABC transporter permease K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D UGYR_16380 macrolide transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:yrb02060]
D UGYR_05325 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D UGYR_05320 PTS sugar transporter K02784 ptsH; phosphocarrier protein HPr
D UGYR_05330 PTS system glucose-specific transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D UGYR_00315 PTS glucose-specific subunit IIBC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D UGYR_15310 PTS N-acetyl glucosamine transporter subunits IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D UGYR_06050 PTS sugar transporter subunit IIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D UGYR_08160 PTS system trehalose(maltose)-specific transporter subunits IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D UGYR_10490 PTS system mannitol-specific transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D UGYR_03270 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D UGYR_03285 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D UGYR_03280 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D UGYR_03035 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D UGYR_03040 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D UGYR_03045 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D UGYR_12580 PTS mannose transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D UGYR_12565 PTS system N-acetylgalactosamine-specific transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D UGYR_12570 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D UGYR_12575 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D UGYR_07360 PTS system glucitol/sorbitol-specific transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D UGYR_07355 srlE; PTS system glucitol/sorbitol-specific transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D UGYR_07350 srlA; PTS system glucitol/sorbitol-specific transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
D UGYR_01870 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_04860 cmtB; PTS system mannitol-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_01865 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04865 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04870 PTS beta-glucoside transporter subunit IIBC K03475 ulaA; ascorbate PTS system EIIC component
D UGYR_04145 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D UGYR_04135 PTS system fructose-specific transporter subunits IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D UGYR_04140 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D UGYR_06885 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D UGYR_08135 phosphohistidinoprotein-hexose phosphotransferase K08485 ptsO; phosphocarrier protein NPr
D UGYR_08125 PTS system nitrogen regulatory protein IIA(Ntr) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:yrb03070]
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_13700 hypothetical protein K03221 yscF; type III secretion protein F
D UGYR_13725 type III secretion system protein InvA K03230 yscV; type III secretion protein V
D UGYR_13750 hypothetical protein K03225 yscQ; type III secretion protein Q
D UGYR_07005 general secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D UGYR_13880 general secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D UGYR_13825 secretion protein K02465 gspS; general secretion pathway protein S
D UGYR_13885 general secretion pathway protein GspC K02452 gspC; general secretion pathway protein C
D UGYR_06995 hypothetical protein K02455 gspF; general secretion pathway protein F
D UGYR_13870 type II secretion protein F K02455 gspF; general secretion pathway protein F
D UGYR_06990 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D UGYR_13865 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D UGYR_06985 hypothetical protein K02457 gspH; general secretion pathway protein H
D UGYR_13860 general secretion pathway protein GspH K02457 gspH; general secretion pathway protein H
D UGYR_13855 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I
D UGYR_06975 hypothetical protein K02459 gspJ; general secretion pathway protein J
D UGYR_13850 general secretion pathway protein GspJ K02459 gspJ; general secretion pathway protein J
D UGYR_06970 hypothetical protein K02460 gspK; general secretion pathway protein K
D UGYR_13845 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K
D UGYR_06965 hypothetical protein K02461 gspL; general secretion pathway protein L
D UGYR_13840 general secretion pathway protein GspL K02461 gspL; general secretion pathway protein L
D UGYR_13835 general secretion pathway protein GspM K02462 gspM; general secretion pathway protein M
D UGYR_07000 general secretion pathway protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D UGYR_13875 general secretion pathway protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D UGYR_13830 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D UGYR_14380 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D UGYR_14385 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D UGYR_08805 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D UGYR_12040 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D UGYR_11425 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D UGYR_14375 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D UGYR_10345 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UGYR_13210 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UGYR_13205 Secretion monitor K13301 secM; secretion monitor
D UGYR_09130 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UGYR_09815 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D UGYR_13995 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D UGYR_08945 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D UGYR_08940 translocase K03117 tatB; sec-independent protein translocase protein TatB
D UGYR_08935 twin-arginine protein translocation system subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D UGYR_15125 preprotein translocase subunit TatA K03425 tatE; sec-independent protein translocase protein TatE
D UGYR_00915 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_08510 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_00920 hypothetical protein K11016 shlA; hemolysin
D UGYR_08515 hemolysin K11016 shlA; hemolysin
D UGYR_08580 hypothetical protein
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:yrb02020]
D UGYR_14325 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D UGYR_14320 transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D UGYR_10270 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_14330 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_00400 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D UGYR_00405 transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D UGYR_11000 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D UGYR_10995 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D UGYR_04605 membrane protein K09475 ompC; outer membrane pore protein C
D UGYR_16595 porin K09476 ompF; outer membrane pore protein F
D UGYR_09795 cpxA; two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D UGYR_09790 transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D UGYR_07910 modulator protein K25864 mzrA; modulator protein MzrA
D UGYR_01920 sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D UGYR_01915 transcriptional regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D UGYR_13450 serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D UGYR_05680 histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D UGYR_05685 transcriptional regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D UGYR_05660 multidrug transporter K07799 mdtA; membrane fusion protein, multidrug efflux system
D UGYR_05665 multidrug transporter K07788 mdtB; multidrug efflux pump
D UGYR_05670 multidrug transporter K07789 mdtC; multidrug efflux pump
D UGYR_05675 transporter K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D UGYR_05470 multidrug transporter K18324 acrD; multidrug efflux pump
D UGYR_11995 sensor protein BasS/PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D UGYR_12000 XRE family transcriptional regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D UGYR_02460 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D UGYR_03880 transcriptional regulator K02403 flhD; flagellar transcriptional activator FlhD
D UGYR_03875 transcriptional regulator K02402 flhC; flagellar transcriptional activator FlhC
D UGYR_03540 flagellin K02406 fliC; flagellin
D UGYR_03545 flagellin K02406 fliC; flagellin
D UGYR_03550 flagellin K02406 fliC; flagellin
D UGYR_03535 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D UGYR_03870 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D UGYR_15380 sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D UGYR_15375 transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D UGYR_15395 potassium-transporting ATPase subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D UGYR_15390 potassium-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D UGYR_15385 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit
D UGYR_15400 kdpF; potassium-transporting ATPase subunit F K01545 kdpF; potassium-transporting ATPase KdpF subunit
D UGYR_04155 cytochrome C K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D UGYR_07985 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D UGYR_12840 TorR family transcriptional regulator K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D UGYR_14700 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D UGYR_14695 transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D UGYR_14680 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D UGYR_14685 membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D UGYR_14690 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D UGYR_10365 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D UGYR_10565 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D UGYR_04010 histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D UGYR_04015 dpiA; two-component response regulator DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB
D UGYR_04005 [citrate [pro-3S]-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D UGYR_04000 citrate lyase subunit gamma K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D UGYR_03995 citrate lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D UGYR_03990 citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D UGYR_03985 2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D UGYR_03980 2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D UGYR_03975 citrate:succinate antiporter K09477 citT; citrate:succinate antiporter
D UGYR_00480 histidine kinase K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D UGYR_00475 transcriptional regulator K07703 dcuR; two-component system, CitB family, response regulator DcuR
D UGYR_14025 C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D UGYR_16060 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D UGYR_00470 malate permease K11616 maeN; malate:Na+ symporter
D UGYR_10865 histidine kinase K27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_14030 response regulator K27883 btsR; two-component system, LytTR family, low-concentration pyruvate response regulator
D UGYR_05190 membrane protein K27884 pyrS; two-component system, LytTR family, high-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_05195 LytTR family transcriptional regulator K27885 pyrR; two-component system, LytTR family, high-concentration pyruvate response regulator
D UGYR_05200 membrane protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D UGYR_00545 nitrate/nitrite sensor protein NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D UGYR_05460 transcriptional regulator NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D UGYR_11680 fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D UGYR_11675 fumarate reductase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D UGYR_11670 fumarate reductase K00246 frdC; succinate dehydrogenase subunit C
D UGYR_11665 fumarate reductase K00247 frdD; succinate dehydrogenase subunit D
D UGYR_04030 MFS transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D UGYR_10645 MFS transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D UGYR_10640 histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D UGYR_10635 transcriptional regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D UGYR_04025 histidine kinase K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D UGYR_04020 transcriptional regulator K20264 fusR; two-component system, NarL family, response regulator FusR
D UGYR_06560 rcsF; membrane protein K06080 rcsF; RcsF protein
D UGYR_04625 histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D UGYR_04615 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D UGYR_04620 transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D UGYR_13455 histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D UGYR_03460 sirA; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D UGYR_13940 carbon storage regulator K03563 csrA; carbon storage regulator
D UGYR_15600 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D UGYR_13655 LuxR family transcriptional regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D UGYR_15605 feruloyl-CoA synthase K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D UGYR_10465 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10480 fimbrial protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10485 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_00740 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_05640 fimbrial assembly protein K07346 fimC; fimbrial chaperone protein
D UGYR_06280 hypothetical protein K07346 fimC; fimbrial chaperone protein
D UGYR_10325 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_10475 CsuC protein K07346 fimC; fimbrial chaperone protein
D UGYR_11640 fimbrial protein K07346 fimC; fimbrial chaperone protein
D UGYR_00735 fimbrial protein K07347 fimD; outer membrane usher protein
D UGYR_01430 pilin outer membrane usher protein SafC K07347 fimD; outer membrane usher protein
D UGYR_05645 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_06285 hypothetical protein K07347 fimD; outer membrane usher protein
D UGYR_10330 usher protein K07347 fimD; outer membrane usher protein
D UGYR_10470 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_07505 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D UGYR_07510 secretin K02280 cpaC; pilus assembly protein CpaC
D UGYR_07520 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D UGYR_07525 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D UGYR_07530 hypothetical protein K12510 tadB; tight adherence protein B
D UGYR_07535 hypothetical protein K12511 tadC; tight adherence protein C
D UGYR_06715 protein-PII uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D UGYR_05995 nitrogen regulatory protein P-II 1 K04751 glnB; nitrogen regulatory protein P-II 1
D UGYR_10060 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D UGYR_10065 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_14450 ABC transporter substrate-binding protein K08478 pgtC; phosphoglycerate transport regulatory protein PgtC
D UGYR_14445 histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D UGYR_14440 transcriptional regulator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA
D UGYR_14455 phosphoglycerate transporter K11382 pgtP; MFS transporter, OPA family, phosphoglycerate transporter protein
D UGYR_10730 C4-dicarboxylate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D UGYR_08115 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D UGYR_06015 histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D UGYR_06005 response regulator GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D UGYR_03840 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D UGYR_10315 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_15345 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_03425 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_03850 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_10515 chemotaxis protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D UGYR_03900 chemotaxis protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D UGYR_03845 methyl-accepting protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D UGYR_03855 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D UGYR_03860 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D UGYR_03830 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D UGYR_03835 chemotaxis protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D UGYR_15200 artP; arginine transporter ATP-binding subunit K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_15205 amino acid ABC transporter permease K10002 gltK; glutamate/aspartate transport system permease protein
D UGYR_15210 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D UGYR_15215 amino acid transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D UGYR_11175 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D UGYR_09965 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D UGYR_03350 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_07300 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D UGYR_00555 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D UGYR_15515 cytochrome d terminal oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D UGYR_00550 ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D UGYR_15520 cytochrome d ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D UGYR_15525 cytochrome bd biosynthesis protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_09405 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D UGYR_09400 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D UGYR_03725 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D UGYR_14780 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome [PATH:yrb04142]
D UGYR_15330 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D UGYR_15055 glycoside hydrolase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 04146 Peroxisome [PATH:yrb04146]
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_08730 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D UGYR_00440 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D UGYR_04695 catalase K03781 katE; catalase [EC:1.11.1.6]
D UGYR_08915 hypothetical protein K03781 katE; catalase [EC:1.11.1.6]
D UGYR_01925 superoxide dismutase K04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
D UGYR_02260 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
D UGYR_10520 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D UGYR_12145 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:yrb02024]
D UGYR_13980 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D UGYR_11755 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D UGYR_01515 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D UGYR_01510 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D UGYR_02385 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_14035 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_15610 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D UGYR_06015 histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D UGYR_06005 response regulator GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D UGYR_03880 transcriptional regulator K02403 flhD; flagellar transcriptional activator FlhD
D UGYR_03875 transcriptional regulator K02402 flhC; flagellar transcriptional activator FlhC
D UGYR_15375 transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D UGYR_04025 histidine kinase K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D UGYR_04020 transcriptional regulator K20264 fusR; two-component system, NarL family, response regulator FusR
D UGYR_03340 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D UGYR_03345 amino acid transporter K20265 gadC; glutamate:GABA antiporter
D UGYR_02730 hypothetical protein K20268 rhiA; rhizosphere induced protein
D UGYR_09090 leucine ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D UGYR_09085 branched-chain amino acid transporter permease subunit LivH K01997 livH; branched-chain amino acid transport system permease protein
D UGYR_09080 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D UGYR_09075 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein
D UGYR_09070 livF; leucine/isoleucine/valine transporter ATP-binding subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein
D UGYR_00450 acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D UGYR_00445 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D UGYR_09965 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_11175 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D UGYR_08430 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D UGYR_01580 ribA; GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D UGYR_14395 ribD; 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D UGYR_01345 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01350 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_02030 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01355 oppB; oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D UGYR_01360 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D UGYR_01365 oppD; oligopeptide transporter ATP-binding component K15583 oppD; oligopeptide transport system ATP-binding protein
D UGYR_01370 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UGYR_10345 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UGYR_08805 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D UGYR_12040 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D UGYR_11425 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D UGYR_14375 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D UGYR_13210 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UGYR_09130 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UGYR_09815 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D UGYR_13995 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:yrb02030]
D UGYR_10315 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_15345 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_03425 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_03850 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_10515 chemotaxis protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D UGYR_03900 chemotaxis protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D UGYR_03845 methyl-accepting protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D UGYR_08480 malE; sugar ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D UGYR_10150 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein
D UGYR_16040 sugar ABC transporter substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D UGYR_10655 peptide ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D UGYR_03860 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D UGYR_03855 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D UGYR_03830 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D UGYR_03825 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D UGYR_03835 chemotaxis protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D UGYR_03840 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D UGYR_03605 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG
D UGYR_03635 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D UGYR_03640 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D UGYR_03870 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D UGYR_03865 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:yrb02040]
D UGYR_03595 flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D UGYR_03600 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D UGYR_03605 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG
D UGYR_03610 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D UGYR_03615 fliI; ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D UGYR_03620 fliJ; flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D UGYR_03625 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D UGYR_03630 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D UGYR_03635 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D UGYR_03640 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D UGYR_03645 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D UGYR_03650 fliP; flagellar biosynthesis protein flip K02419 fliP; flagellar biosynthesis protein FliP
D UGYR_03655 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D UGYR_03660 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D UGYR_03740 flagellar protein flhE K03516 flhE; flagellar protein FlhE
D UGYR_03745 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D UGYR_03750 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D UGYR_03720 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D UGYR_03715 flagellar biosynthesis protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D UGYR_03710 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D UGYR_03705 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D UGYR_03700 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D UGYR_03695 flgF; flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D UGYR_03690 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D UGYR_03685 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D UGYR_03680 flgI; flagellar basal body P-ring biosynthesis protein FlgA K02394 flgI; flagellar P-ring protein FlgI
D UGYR_03675 flgJ; flagellar rod assembly protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D UGYR_03670 flgK; flagellar hook protein FlgK K02396 flgK; flagellar hook-associated protein 1
D UGYR_03665 flgL; flagellar hook protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D UGYR_03540 flagellin K02406 fliC; flagellin
D UGYR_03545 flagellin K02406 fliC; flagellin
D UGYR_03550 flagellin K02406 fliC; flagellin
D UGYR_03555 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D UGYR_03560 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D UGYR_03565 flagellar biosynthesis protein FliT K02423 fliT; flagellar protein FliT
D UGYR_03870 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D UGYR_03865 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D UGYR_03725 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D UGYR_03730 flagellar biosynthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D UGYR_03520 cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D UGYR_03530 flagellar biosynthesis protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D UGYR_07735 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D UGYR_03880 transcriptional regulator K02403 flhD; flagellar transcriptional activator FlhD
D UGYR_03875 transcriptional regulator K02402 flhC; flagellar transcriptional activator FlhC
D UGYR_08115 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D UGYR_03535 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:yrb04981]
D UGYR_07135 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D UGYR_12970 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D UGYR_05955 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D UGYR_06875 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D UGYR_08635 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04980 Cobalamin transport and metabolism
D UGYR_08635 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation
D UGYR_10610 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D UGYR_13790 hypothetical protein K13287 sipD; invasin D
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:yrb01501]
D UGYR_16595 porin K09476 ompF; outer membrane pore protein F
D UGYR_04605 membrane protein K09475 ompC; outer membrane pore protein C
D UGYR_14510 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D UGYR_00340 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D UGYR_01345 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01350 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_02030 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01355 oppB; oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D UGYR_01360 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D UGYR_01365 oppD; oligopeptide transporter ATP-binding component K15583 oppD; oligopeptide transport system ATP-binding protein
D UGYR_01370 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UGYR_14645 multidrug transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D UGYR_14640 multidrug transporter K18138 acrB; multidrug efflux pump
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_11035 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D UGYR_15160 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D UGYR_03120 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_13135 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:yrb01502]
D UGYR_10565 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D UGYR_03225 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_13175 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_01150 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_08405 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_13145 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D UGYR_13150 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D UGYR_13165 murG; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:yrb01503]
D UGYR_00400 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D UGYR_00405 transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D UGYR_10630 phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D UGYR_03135 phospholipid:lipid A palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D UGYR_02460 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D UGYR_02455 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D UGYR_02450 UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D UGYR_02445 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D UGYR_02440 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D UGYR_02435 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D UGYR_02430 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D UGYR_11995 sensor protein BasS/PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D UGYR_12000 XRE family transcriptional regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D UGYR_02225 hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D UGYR_02115 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D UGYR_02120 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D UGYR_02125 peptide ABC transporter permease K19228 sapC; cationic peptide transport system permease protein
D UGYR_02130 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D UGYR_02135 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D UGYR_00490 serine 3-dehydrogenase K01406 prtC; serralysin [EC:3.4.24.40]
D UGYR_06575 copper homeostasis protein K06079 cutF; copper homeostasis protein (lipoprotein)
D UGYR_09795 cpxA; two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D UGYR_09790 transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D UGYR_06820 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_11740 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_02325 peptidoglycan-binding protein K19236 ycfS; L,D-transpeptidase YcfS
D UGYR_13450 serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D UGYR_10090 protein disulfide isomerase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D UGYR_11155 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D UGYR_14645 multidrug transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D UGYR_14640 multidrug transporter K18138 acrB; multidrug efflux pump
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_06645 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:yrb01000]
C 01001 Protein kinases [BR:yrb01001]
D UGYR_03200 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D UGYR_15030 serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D UGYR_14325 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D UGYR_00400 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D UGYR_11000 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D UGYR_01920 sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D UGYR_09795 cpxA; two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D UGYR_05680 histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D UGYR_11995 sensor protein BasS/PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D UGYR_15380 sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D UGYR_07985 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D UGYR_14700 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D UGYR_00545 nitrate/nitrite sensor protein NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D UGYR_10640 histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D UGYR_04025 histidine kinase K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D UGYR_04615 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D UGYR_04625 histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D UGYR_13455 histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D UGYR_15600 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D UGYR_04010 histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D UGYR_00480 histidine kinase K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D UGYR_10865 histidine kinase K27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_05190 membrane protein K27884 pyrS; two-component system, LytTR family, high-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_10060 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D UGYR_06015 histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D UGYR_14445 histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D UGYR_03860 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:yrb01009]
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D UGYR_12775 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:yrb01002]
D UGYR_12925 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D UGYR_13830 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D UGYR_07500 tight adherance operon protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D UGYR_00650 hycI; hydrogenase 3 maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D UGYR_15455 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D UGYR_05800 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D UGYR_04205 spr; membrane protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D UGYR_02255 hydrolase K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D UGYR_02425 endopeptidase K13695 nlpC; probable lipoprotein NlpC
D UGYR_04925 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D UGYR_07995 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D UGYR_10265 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D UGYR_15285 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D UGYR_14460 oxidative-stress-resistance chaperone K03152 thiJ; protein deglycase [EC:3.5.1.124]
D UGYR_02325 peptidoglycan-binding protein K19236 ycfS; L,D-transpeptidase YcfS
D UGYR_16575 peptidase K21470 ycbB; L,D-transpeptidase YcbB
D UGYR_15645 CAAX protease K07052 K07052; CAAX protease family protein
D UGYR_00010 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D UGYR_10790 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D UGYR_00460 dipeptidyl carboxypeptidase II K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D UGYR_00490 serine 3-dehydrogenase K01406 prtC; serralysin [EC:3.4.24.40]
D UGYR_10565 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D UGYR_04440 peptidase M15 K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D UGYR_06840 protease K01407 ptrA; protease III [EC:3.4.24.55]
D UGYR_12245 multifunctional aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D UGYR_05880 aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D UGYR_05490 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D UGYR_00390 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D UGYR_14210 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D UGYR_01020 peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D UGYR_06710 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D UGYR_08890 proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D UGYR_07120 proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D UGYR_13520 alkaline phosphatase K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-]
D UGYR_12025 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D UGYR_02655 heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D UGYR_05550 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D UGYR_06670 zinc metallopeptidase RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D UGYR_05055 mepA; murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D UGYR_03955 DgsA anti-repressor MtfA K09933 mtfA; MtfA peptidase
D UGYR_01950 serine protease K04775 ydgD; protease YdgD [EC:3.4.21.-]
D UGYR_13450 serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D UGYR_08040 serine endoprotease DegQ K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D UGYR_08045 serine endoprotease K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D UGYR_02980 protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D UGYR_15145 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_16215 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_15815 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D UGYR_04585 beta-lactam-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D UGYR_12005 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D UGYR_14530 Clp protease ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D UGYR_14540 DNA-binding protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D UGYR_00060 Lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D UGYR_08435 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D UGYR_06095 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D UGYR_02970 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D UGYR_02660 carboxy-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D UGYR_01235 protease 4 K04773 sppA; protease IV [EC:3.4.21.-]
D UGYR_01545 peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D UGYR_10905 intramembrane serine protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D UGYR_09705 ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D UGYR_05695 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D UGYR_12115 protease K24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
D UGYR_12120 protease K24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
D UGYR_08195 pmbA; peptidase PmbA K03592 pmbA; PmbA protein
D UGYR_08240 tldD; protease TldD K03568 tldD; TldD protein
D UGYR_04660 ecotin K08276 eco; ecotin
D UGYR_05870 hypothetical protein K06894 yfhM; alpha-2-macroglobulin
D UGYR_11770 cell division protein FtsH K04087 hflC; modulator of FtsH protease HflC
D UGYR_11765 cell division protein FtsH K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:yrb01003]
D UGYR_10885 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D UGYR_10705 bcsA; cellulose synthase K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D UGYR_07975 mtgA; peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_05865 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D UGYR_13410 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D UGYR_11035 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D UGYR_13160 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_15155 cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_09360 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D UGYR_09370 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D UGYR_00165 glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:yrb01005]
D UGYR_06645 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D UGYR_06640 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D UGYR_13195 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D UGYR_06655 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D UGYR_14870 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D UGYR_16515 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D UGYR_00185 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D UGYR_01025 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D UGYR_05025 aspartyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D UGYR_08345 lipid A biosynthesis palmitoleoyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D UGYR_04200 membrane protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D UGYR_09870 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D UGYR_02440 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D UGYR_03135 phospholipid:lipid A palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D UGYR_02225 hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D UGYR_10630 phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D UGYR_00820 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D UGYR_16540 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D UGYR_08095 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D UGYR_08090 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D UGYR_09865 ADP-heptose--LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D UGYR_09875 lipopolysaccharide biosynthesis protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D UGYR_09860 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D UGYR_12635 lipopolysaccharide biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D UGYR_14145 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D UGYR_06540 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D UGYR_07680 heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D UGYR_09855 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D UGYR_09365 common antigen polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D UGYR_04675 bactoprenol glucosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D UGYR_09415 UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:yrb01011]
D UGYR_08050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D UGYR_08845 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D UGYR_13170 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D UGYR_13155 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D UGYR_13140 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D UGYR_03225 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_13175 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D UGYR_01150 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_08405 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D UGYR_09540 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D UGYR_13150 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D UGYR_13165 murG; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D UGYR_07705 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_16240 UDP-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D UGYR_00910 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D UGYR_11035 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D UGYR_13410 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D UGYR_05865 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D UGYR_15160 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D UGYR_03120 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_13135 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_15145 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_16215 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D UGYR_12005 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D UGYR_04585 beta-lactam-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D UGYR_15815 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D UGYR_07975 mtgA; peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_13160 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_15155 cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_02325 peptidoglycan-binding protein K19236 ycfS; L,D-transpeptidase YcfS
D UGYR_16575 peptidase K21470 ycbB; L,D-transpeptidase YcbB
D UGYR_10565 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D UGYR_05055 mepA; murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D UGYR_02255 hydrolase K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D UGYR_04205 spr; membrane protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D UGYR_01020 peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D UGYR_04440 peptidase M15 K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D UGYR_12810 lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D UGYR_06800 mltA; murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D UGYR_05165 murein hydrolase effector LrgB K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D UGYR_07325 mltC; murein transglycosylase K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D UGYR_14110 mltD; lytic murein transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D UGYR_02590 lytic transglycosylase K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D UGYR_06035 murein transglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D UGYR_00295 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D UGYR_15150 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D UGYR_06820 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_11740 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_01765 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_02640 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_13260 N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_02320 murein lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:yrb01004]
D UGYR_00270 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D UGYR_00265 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D UGYR_05030 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D UGYR_00285 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D UGYR_00275 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D UGYR_00055 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D UGYR_06650 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D UGYR_02140 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D UGYR_14845 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D UGYR_14610 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D UGYR_01455 acyl-CoA esterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D UGYR_14560 thioesterase K12500 tesC; thioesterase III [EC:3.1.2.-]
D UGYR_11555 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_08445 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D UGYR_00260 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D UGYR_07715 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UGYR_07605 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:yrb01008]
D UGYR_07470 antibiotic synthesis protein MbtH K05375 mbtH; MbtH protein
D UGYR_07420 isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D UGYR_03970 phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]
D UGYR_07425 entE; enterobactin synthase subunit E K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D UGYR_07465 chromophore lyase K24101 vabF; L-arginine---[L-arginyl-carrier protein] ligase [EC:6.2.1.63]
C 01006 Prenyltransferases [BR:yrb01006]
D UGYR_14425 geranyl transferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D UGYR_11970 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D UGYR_06680 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D UGYR_11750 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D UGYR_09715 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D UGYR_08450 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D UGYR_14480 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:yrb01007]
D UGYR_05265 gltX; glutamyl-tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D UGYR_15315 glutamate--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D UGYR_13385 glutamyl-Q tRNA(Asp) ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D UGYR_02190 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UGYR_11095 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D UGYR_14880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UGYR_00930 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UGYR_16095 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UGYR_12920 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UGYR_12235 valyl-tRNA synthase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UGYR_15190 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UGYR_07045 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UGYR_00970 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UGYR_16600 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UGYR_05830 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UGYR_10450 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D UGYR_10455 glyS; glycyl-tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D UGYR_16445 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UGYR_06570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UGYR_02550 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UGYR_13935 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UGYR_02530 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UGYR_02525 pheT; phenylalanine--tRNA ligase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D UGYR_16590 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D UGYR_10415 avtA; valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D UGYR_04815 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D UGYR_05180 glutamate-pyruvate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D UGYR_08400 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D UGYR_16170 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D UGYR_09850 2-amino-3-ketobutyrate CoA ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D UGYR_15695 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D UGYR_11165 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D UGYR_00565 acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D UGYR_15685 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D UGYR_13415 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D UGYR_09475 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D UGYR_16480 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D UGYR_02460 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D UGYR_09380 TDP-4-oxo-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:yrb00194]
D UGYR_10255 atpC; ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D UGYR_10250 ATP synthase F0F1 subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UGYR_10245 ATP F0F1 synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D UGYR_10240 ATP F0F1 synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UGYR_10235 ATP F0F1 synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UGYR_10230 ATP F0F1 synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D UGYR_10225 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D UGYR_10220 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D UGYR_10215 ATP synthase F0F1 subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:yrb03000]
D UGYR_12415 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UGYR_03265 transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D UGYR_12830 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D UGYR_00525 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D UGYR_06775 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D UGYR_09455 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D UGYR_09000 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D UGYR_12905 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D UGYR_09570 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D UGYR_07150 chromosome replication initiation inhibitor protein K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D UGYR_13080 leuO; transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D UGYR_01560 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D UGYR_08235 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D UGYR_09500 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D UGYR_16230 transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D UGYR_10900 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D UGYR_12550 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D UGYR_07375 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D UGYR_01860 transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D UGYR_03920 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D UGYR_06920 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UGYR_10140 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UGYR_16035 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UGYR_09695 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D UGYR_13100 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D UGYR_08165 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D UGYR_02265 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D UGYR_10840 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D UGYR_00605 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D UGYR_01135 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D UGYR_13275 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D UGYR_07895 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D UGYR_14650 transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D UGYR_09915 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D UGYR_02230 transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D UGYR_15070 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D UGYR_09560 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D UGYR_15795 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D UGYR_10195 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D UGYR_16425 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UGYR_14585 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D UGYR_00445 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D UGYR_10915 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D UGYR_02210 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D UGYR_06470 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D UGYR_14820 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D UGYR_11460 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D UGYR_15335 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D UGYR_08430 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D UGYR_08640 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D UGYR_02645 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D UGYR_11175 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D UGYR_01845 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D UGYR_04050 hypothetical protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D UGYR_05920 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D UGYR_11785 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D UGYR_14950 arsenic resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D UGYR_07215 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D UGYR_01035 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D UGYR_08840 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D UGYR_08335 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D UGYR_12815 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D UGYR_11955 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D UGYR_13050 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D UGYR_12785 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D UGYR_00720 transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D UGYR_09110 XRE family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D UGYR_15650 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D UGYR_09680 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D UGYR_03505 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D UGYR_12455 bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D UGYR_14520 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D UGYR_08920 rfaH; transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH
D UGYR_11945 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D UGYR_15295 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D UGYR_01730 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D UGYR_10500 transcriptional regulator K02562 mtlR; mannitol operon repressor
D UGYR_02050 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D UGYR_03495 transcriptional regulator K03765 cadC; transcriptional activator of cad operon
D UGYR_05535 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D UGYR_02095 pspF; phage shock protein K03974 pspF; psp operon transcriptional activator
D UGYR_02080 transcriptional regulator K03973 pspC; phage shock protein C
D UGYR_12680 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon
D UGYR_08185 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D UGYR_12320 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein
D UGYR_12375 dipicolinate synthase K07733 alpA; prophage regulatory protein
D UGYR_07240 hypothetical protein K07735 algH; putative transcriptional regulator
D UGYR_13390 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D UGYR_14390 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D UGYR_14225 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D UGYR_04515 regulatory protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D UGYR_13120 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:yrb03021]
D UGYR_11450 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UGYR_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UGYR_08770 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UGYR_09995 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D UGYR_07735 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D UGYR_13585 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D UGYR_06120 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D UGYR_09115 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
D UGYR_08115 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D UGYR_03535 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D UGYR_13020 ATP-dependent helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D UGYR_12060 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D UGYR_14405 nusB; transcription antiterminator NusB K03625 nusB; transcription antitermination protein NusB
D UGYR_08800 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
D UGYR_08015 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D UGYR_08010 Clp protease ClpP K03600 sspB; stringent starvation protein B
D UGYR_15015 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D UGYR_15020 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist
D UGYR_15030 serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D UGYR_06115 anti-RNA polymerase sigma factor SigE K03597 rseA; sigma-E factor negative regulatory protein RseA
D UGYR_06110 rseB; anti-sigma E factor K03598 rseB; sigma-E factor negative regulatory protein RseB
D UGYR_06105 SoxR reducing system protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D UGYR_13390 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D UGYR_12010 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D UGYR_10990 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D UGYR_09420 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D UGYR_06595 Rho-binding antiterminator K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:yrb03019]
D UGYR_00235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D UGYR_08255 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D UGYR_06090 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UGYR_11790 exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D UGYR_11705 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D UGYR_09430 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D UGYR_15800 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D UGYR_12095 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D UGYR_09225 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UGYR_12085 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D UGYR_09420 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D UGYR_09775 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UGYR_12890 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D UGYR_11605 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D UGYR_11755 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D UGYR_05610 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D UGYR_13380 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D UGYR_06890 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D UGYR_13940 carbon storage regulator K03563 csrA; carbon storage regulator
D UGYR_08280 regulatory protein CsrD K18765 csrD; RNase E specificity factor CsrD
D UGYR_09720 ribonuclease activity regulator protein RraA K02553 rraA; regulator of ribonuclease activity A
D UGYR_12225 regulator K09893 rraB; regulator of ribonuclease activity B
D UGYR_08130 glmZ(sRNA)-inactivating NTPase K06958 rapZ; RNase adapter protein RapZ
D UGYR_01955 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D UGYR_13405 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:yrb03011]
D UGYR_16495 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D UGYR_06705 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D UGYR_11355 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D UGYR_11445 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D UGYR_11410 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D UGYR_11850 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D UGYR_11300 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D UGYR_11395 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D UGYR_08020 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D UGYR_11320 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D UGYR_11440 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D UGYR_11295 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D UGYR_11435 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D UGYR_11390 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D UGYR_12080 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D UGYR_14000 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D UGYR_11370 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D UGYR_11860 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D UGYR_11345 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D UGYR_12910 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D UGYR_07725 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D UGYR_08790 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D UGYR_11340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D UGYR_11325 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D UGYR_11330 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D UGYR_11385 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D UGYR_11400 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D UGYR_11865 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D UGYR_08785 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D UGYR_08795 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D UGYR_08780 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D UGYR_08025 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D UGYR_11375 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D UGYR_11420 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D UGYR_11360 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D UGYR_11455 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D UGYR_11405 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D UGYR_14015 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D UGYR_02535 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D UGYR_11975 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D UGYR_11350 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D UGYR_11335 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D UGYR_11380 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D UGYR_11980 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D UGYR_09895 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D UGYR_11365 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D UGYR_11415 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D UGYR_09685 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UGYR_14635 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UGYR_00255 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D UGYR_09890 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D UGYR_10360 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D UGYR_02540 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D UGYR_11430 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D UGYR_06520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08665 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08675 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08855 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_09515 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_10115 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_11540 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_14095 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_06535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_09535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_10130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_11520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_14075 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_06525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08680 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_09520 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_10120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_11535 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_14090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:yrb03009]
D UGYR_06090 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UGYR_03200 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D UGYR_11705 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D UGYR_06085 hypothetical protein K03595 era; GTPase
D UGYR_11990 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D UGYR_13390 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D UGYR_12060 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D UGYR_14405 nusB; transcription antiterminator NusB K03625 nusB; transcription antitermination protein NusB
D UGYR_08800 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
D UGYR_04245 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D UGYR_12990 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D UGYR_11480 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D UGYR_12710 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D UGYR_09135 rsmD; 16S rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D UGYR_07230 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D UGYR_10210 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D UGYR_13125 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D UGYR_07950 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D UGYR_10795 methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D UGYR_03115 23S rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D UGYR_11795 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D UGYR_12020 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D UGYR_15930 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D UGYR_07840 23S rRNA methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D UGYR_15165 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D UGYR_00120 23S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D UGYR_10785 ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D UGYR_00030 rlmL; 23S rRNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D UGYR_06765 23S rRNA methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D UGYR_05850 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D UGYR_13460 rumA; 23S rRNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D UGYR_16295 rumB; 23S rRNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D UGYR_03335 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D UGYR_13015 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D UGYR_01530 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D UGYR_00240 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D UGYR_14060 rluD; 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D UGYR_00435 23S rRNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D UGYR_03295 23S rRNA pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D UGYR_06490 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D UGYR_12720 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D UGYR_00895 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D UGYR_14005 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D UGYR_16470 ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D UGYR_08325 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D UGYR_05065 SAM-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D UGYR_00395 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D UGYR_00235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D UGYR_08255 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D UGYR_07245 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D UGYR_03000 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D UGYR_12095 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D UGYR_06135 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D UGYR_11700 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D UGYR_05815 GTP-binding protein Der K03977 engA; GTPase
D UGYR_11760 GTPase HflX K03665 hflX; GTPase
D UGYR_11505 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D UGYR_10000 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D UGYR_12070 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D UGYR_12055 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
D UGYR_14935 ribosome-associated protein K14761 rlbA; ribosome-associated protein
D UGYR_15170 ribosome-associated protein K09710 ybeB; ribosome-associated protein
D UGYR_15235 metal-binding heat shock protein K07042 ybeY; probable rRNA maturation factor
D UGYR_12015 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D UGYR_10505 hypothetical protein K14762 yibL; ribosome-associated protein
D UGYR_08200 hypothetical protein K09889 yjgA; ribosome-associated protein
D UGYR_08120 ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
D UGYR_14050 translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
D UGYR_00760 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
D UGYR_00250 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:yrb03016]
D UGYR_07700 tRNA nucleotidyl transferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D UGYR_05265 gltX; glutamyl-tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D UGYR_06570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UGYR_12920 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UGYR_15190 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UGYR_16095 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UGYR_15315 glutamate--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D UGYR_00930 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UGYR_07045 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UGYR_00970 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UGYR_13935 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UGYR_16600 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UGYR_02550 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UGYR_16445 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UGYR_14880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UGYR_12235 valyl-tRNA synthase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UGYR_05830 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UGYR_02530 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UGYR_02525 pheT; phenylalanine--tRNA ligase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D UGYR_02190 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UGYR_11095 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D UGYR_10035 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D UGYR_00320 purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D UGYR_07310 trmB; tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D UGYR_06565 tRNA (adenine(37)-N6)-methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D UGYR_04955 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D UGYR_12075 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D UGYR_13565 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D UGYR_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D UGYR_11505 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D UGYR_11750 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D UGYR_10340 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D UGYR_10205 hypothetical protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D UGYR_01245 selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D UGYR_11890 adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D UGYR_10355 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D UGYR_16605 bacterial RNase P K01978 rnpB; RNase P catalytic RNA component
D UGYR_02245 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D UGYR_09925 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D UGYR_01635 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D UGYR_01085 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D UGYR_13400 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D UGYR_12790 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D UGYR_10450 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D UGYR_10455 glyS; glycyl-tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D UGYR_13385 glutamyl-Q tRNA(Asp) ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D UGYR_14805 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D UGYR_06040 tRNA adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D UGYR_08425 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D UGYR_08330 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D UGYR_15805 tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D UGYR_15245 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D UGYR_00950 tRNA methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D UGYR_00945 tRNA methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D UGYR_16555 SAM-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D UGYR_09550 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D UGYR_14010 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D UGYR_06490 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D UGYR_10005 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D UGYR_05925 tRNA (cytidine/uridine-2'-O-)-methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D UGYR_09800 rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D UGYR_06130 tRNA (adenine-N6)-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D UGYR_06735 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D UGYR_03335 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D UGYR_13015 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D UGYR_00425 mnmA; tRNA 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D UGYR_02020 tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D UGYR_09165 sulfur transfer protein SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D UGYR_11290 sulfur relay protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D UGYR_11285 protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D UGYR_11280 sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D UGYR_00130 sulfur transfer protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D UGYR_05905 iscA; iron-sulfur cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D UGYR_07085 ygfZ; global regulator K06980 ygfZ; tRNA-modifying protein YgfZ
D UGYR_05035 mnmC; FAD-dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D UGYR_14365 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D UGYR_14565 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D UGYR_13490 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D UGYR_13485 pyrroloquinoline quinone biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D UGYR_06750 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D UGYR_11725 [Fe-S]-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D UGYR_14370 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D UGYR_14435 tRNA s(4)U8 sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D UGYR_06605 tilS; tRNA(Ile)-lysidine ligase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D UGYR_05510 methionine tRNA cytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D UGYR_01070 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D UGYR_07720 UGMP family protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D UGYR_11735 ADP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D UGYR_06795 sulfur acceptor protein CsdL K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D UGYR_11790 exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D UGYR_12085 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:yrb03012]
D UGYR_01615 translation initiation factor Sui1 K03113 EIF1; translation initiation factor 1
D UGYR_12065 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D UGYR_02545 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D UGYR_11240 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D UGYR_06700 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D UGYR_08810 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_11310 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_11305 fusA; elongation factor G K02355 fusA; elongation factor G
D UGYR_10560 selenocysteinyl-tRNA-specific translation factor K03833 selB; selenocysteine-specific elongation factor
D UGYR_00800 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D UGYR_06690 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D UGYR_00805 SAM-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D UGYR_00770 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D UGYR_16400 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D UGYR_04175 elongation factor P K02356 efp; elongation factor P
D UGYR_11620 elongation factor P K02356 efp; elongation factor P
D UGYR_11685 poxB regulator PoxA K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D UGYR_11615 lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D UGYR_05045 elongation factor P hydroxylase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D UGYR_07050 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D UGYR_12725 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D UGYR_11465 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D UGYR_06580 peptidyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:yrb03110]
D UGYR_16395 clpA; Clp protease ClpX K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D UGYR_14535 clpX; Clp protease ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D UGYR_09710 hslU; ATP-dependent protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D UGYR_12890 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D UGYR_05895 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D UGYR_05630 chaperone K04046 yegD; hypothetical chaperone protein
D UGYR_11605 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D UGYR_12895 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D UGYR_02155 DNA-binding protein K05516 cbpA; curved DNA-binding protein
D UGYR_13010 djlA; Dna-J like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D UGYR_05900 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D UGYR_11010 hslO; Hsp33-like chaperonin K04083 hslO; molecular chaperone Hsp33
D UGYR_06160 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D UGYR_10400 heat shock protein IbpA K04080 ibpA; molecular chaperone IbpA
D UGYR_10405 hypothetical protein K04081 ibpB; molecular chaperone IbpB
D UGYR_11015 ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D UGYR_11600 groES; molecular chaperone GroES K04078 groES; chaperonin GroES
D UGYR_13450 serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D UGYR_12025 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D UGYR_10220 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D UGYR_00740 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_05640 fimbrial assembly protein K07346 fimC; fimbrial chaperone protein
D UGYR_06280 hypothetical protein K07346 fimC; fimbrial chaperone protein
D UGYR_10325 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_10475 CsuC protein K07346 fimC; fimbrial chaperone protein
D UGYR_11640 fimbrial protein K07346 fimC; fimbrial chaperone protein
D UGYR_09815 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D UGYR_09785 cpxP; periplasmic stress adaptor protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy
D UGYR_03220 acid-resistance protein K19778 hdeB; acid stress chaperone HdeB
D UGYR_00695 hydrogenase nickel incorporation protein K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D UGYR_00700 hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D UGYR_15330 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D UGYR_11155 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D UGYR_14875 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D UGYR_14550 molecular chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D UGYR_11270 peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D UGYR_11875 peptidylprolyl isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D UGYR_12930 peptidylprolyl isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D UGYR_11260 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D UGYR_09445 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D UGYR_13000 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D UGYR_09425 trxA; thioredoxin K03671 TXN; thioredoxin
D UGYR_06495 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D UGYR_14835 hypothetical protein K05838 ybbN; putative thioredoxin
D UGYR_16255 glutaredoxin K03674 grxA; glutaredoxin 1
D UGYR_09820 glutaredoxin K03676 grxC; glutaredoxin 3
D UGYR_02250 glutaredoxin K07390 grxD; monothiol glutaredoxin
D UGYR_10090 protein disulfide isomerase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D UGYR_01125 hypothetical protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D UGYR_07060 protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D UGYR_11575 dipZ; thiol:disulfide interchange protein precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D UGYR_05115 thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:yrb04131]
D UGYR_05855 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D UGYR_01210 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D UGYR_15615 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_01030 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_02315 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:yrb04121]
C 03051 Proteasome [BR:yrb03051]
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:yrb03032]
D UGYR_14125 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D UGYR_12415 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UGYR_08710 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D UGYR_14545 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D UGYR_02520 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D UGYR_16500 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D UGYR_10365 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D UGYR_08410 DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D UGYR_07730 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UGYR_10370 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UGYR_12240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D UGYR_15180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UGYR_00305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UGYR_14130 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D UGYR_14705 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UGYR_12715 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D UGYR_02965 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D UGYR_06635 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_01725 DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D UGYR_11080 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D UGYR_15360 replication initiation regulator SeqA K03645 seqA; negative modulator of initiation of replication
D UGYR_05560 DNA replication initiation factor K10763 hda; DnaA-homolog protein
D UGYR_04630 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D UGYR_10380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D UGYR_07610 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UGYR_07625 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D UGYR_01555 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D UGYR_01250 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:yrb03036]
D UGYR_12415 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UGYR_06090 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UGYR_01320 transcriptional regulator K03746 hns; DNA-binding protein H-NS
D UGYR_08710 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D UGYR_14545 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D UGYR_02520 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D UGYR_16500 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D UGYR_02155 DNA-binding protein K05516 cbpA; curved DNA-binding protein
D UGYR_02150 chaperone-modulator protein CbpM K18997 cbpM; chaperone modulatory protein CbpM
D UGYR_12830 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D UGYR_10365 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D UGYR_07965 DnaA initiator-associating protein DiaA K12961 diaA; DnaA initiator-associating protein
D UGYR_00115 heat shock protein HspQ K11940 hspQ; heat shock protein HspQ
D UGYR_15950 DNA starvation/stationary phase protection protein Dps K04047 dps; starvation-inducible DNA-binding protein
D UGYR_08335 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D UGYR_11755 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D UGYR_07150 chromosome replication initiation inhibitor protein K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D UGYR_16425 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UGYR_16570 mukB; cell division protein MukB K03632 mukB; chromosome partition protein MukB
D UGYR_16565 condesin subunit E K03804 mukE; chromosome partition protein MukE
D UGYR_16560 condesin subunit F K03633 mukF; chromosome partition protein MukF
D UGYR_13185 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D UGYR_13550 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D UGYR_09125 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D UGYR_03120 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_13135 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D UGYR_16430 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D UGYR_13130 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D UGYR_09700 cell division protein FtsN K03591 ftsN; cell division protein FtsN
D UGYR_13180 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D UGYR_13160 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_09120 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D UGYR_13190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D UGYR_05305 cell division protein ZipA K03528 zipA; cell division protein ZipA
D UGYR_07130 Z-ring-associated protein K09888 zapA; cell division protein ZapA
D UGYR_09725 septal ring assembly protein ZapB K09892 zapB; cell division protein ZapB
D UGYR_00020 cell division protein ZapC K18657 zapC; cell division protein ZapC
D UGYR_13225 hypothetical protein K18778 zapD; cell division protein ZapD
D UGYR_08030 hypothetical protein K06916 zapE; cell division protein ZapE
D UGYR_11870 Opacity-associated protein A domain protein K07269 ytfB; cell division protein YtfB
D UGYR_06820 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_11740 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D UGYR_14645 multidrug transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D UGYR_01100 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC
D UGYR_01095 cell division inhibitor MinD K03609 minD; septum site-determining protein MinD
D UGYR_01090 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D UGYR_00075 cell division protein K13053 sulA; cell division inhibitor SulA
D UGYR_09915 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D UGYR_15360 replication initiation regulator SeqA K03645 seqA; negative modulator of initiation of replication
D UGYR_08275 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D UGYR_08270 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D UGYR_08265 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D UGYR_15155 cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_07610 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UGYR_07625 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D UGYR_10205 hypothetical protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D UGYR_10210 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D UGYR_09280 xerC; site-specific tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D UGYR_07065 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D UGYR_16100 antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D UGYR_10080 GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:yrb03400]
D UGYR_01840 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D UGYR_15415 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D UGYR_06155 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D UGYR_07315 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D UGYR_01640 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D UGYR_04150 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D UGYR_13215 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D UGYR_09910 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D UGYR_10440 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D UGYR_09885 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D UGYR_01265 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D UGYR_04130 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D UGYR_08720 endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7]
D UGYR_07055 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D UGYR_05300 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_09985 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UGYR_10085 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D UGYR_08390 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D UGYR_15715 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D UGYR_03455 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D UGYR_09270 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UGYR_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UGYR_08770 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UGYR_11450 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UGYR_09995 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D UGYR_00360 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D UGYR_13590 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D UGYR_11745 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D UGYR_06895 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D UGYR_04075 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D UGYR_05810 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D UGYR_14430 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D UGYR_02975 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D UGYR_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UGYR_10370 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UGYR_12240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D UGYR_15180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UGYR_00305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UGYR_14130 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D UGYR_14705 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UGYR_12715 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D UGYR_02965 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_11080 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D UGYR_06835 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D UGYR_06845 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D UGYR_06830 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D UGYR_13925 recA; recombinase A K03553 recA; recombination protein RecA
D UGYR_00990 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D UGYR_00995 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D UGYR_00985 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D UGYR_04480 crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D UGYR_09690 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D UGYR_11855 primosomal replication protein N K02686 priB; primosomal replication protein N
D UGYR_14665 prephenate dehydrogenase K04067 priC; primosomal replication protein N''
D UGYR_14310 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
D UGYR_12780 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D UGYR_10375 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D UGYR_10010 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D UGYR_06080 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D UGYR_14715 recR; recombination protein RecR K06187 recR; recombination protein RecR
D UGYR_06170 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D UGYR_14300 recombination associated protein K03554 rdgC; recombination associated protein RdgC
D UGYR_04630 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D UGYR_10380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D UGYR_01555 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D UGYR_08710 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D UGYR_14545 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D UGYR_08335 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D UGYR_02520 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D UGYR_16500 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D UGYR_09225 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D UGYR_01320 transcriptional regulator K03746 hns; DNA-binding protein H-NS
D UGYR_14205 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D UGYR_08435 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D UGYR_13025 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D UGYR_00215 damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D UGYR_13930 recombinase RecX K03565 recX; regulatory protein
D UGYR_09440 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D UGYR_00095 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D UGYR_01065 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D UGYR_15920 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D UGYR_04640 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_06435 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D UGYR_04645 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D UGYR_06440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:yrb03029]
D UGYR_12065 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D UGYR_02545 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D UGYR_06700 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D UGYR_08810 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_11310 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_11305 fusA; elongation factor G K02355 fusA; elongation factor G
D UGYR_06085 hypothetical protein K03595 era; GTPase
D UGYR_02190 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UGYR_15190 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UGYR_00970 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UGYR_00930 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UGYR_03585 endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D UGYR_08385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D UGYR_06665 outer membrane protein assembly protein YaeT K07277 SAM50; outer membrane protein insertion porin family
D UGYR_12890 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D UGYR_06160 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D UGYR_11605 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D UGYR_11600 groES; molecular chaperone GroES K04078 groES; chaperonin GroES
D UGYR_12895 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D UGYR_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D UGYR_05900 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D UGYR_02250 glutaredoxin K07390 grxD; monothiol glutaredoxin
D UGYR_16100 antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D UGYR_14480 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D UGYR_10345 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:yrb02000]
D UGYR_16510 lipid transporter ATP-binding/permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D UGYR_14590 multidrug ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D UGYR_14595 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D UGYR_03195 multidrug ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D UGYR_00500 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_09605 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_16410 amino acid ABC transporter permease K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D UGYR_16415 amino acid ABC transporter permease K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D UGYR_16380 macrolide transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D UGYR_00035 ABC transporter ATPase K15738 uup; ABC transport system ATP-binding/permease protein
D UGYR_09770 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D UGYR_05350 sulfate/thiosulfate transporter subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D UGYR_05345 cysW; sulfate/thiosulfate transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D UGYR_05340 sulfate/thiosulfate transporter subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D UGYR_15660 modA; molybdate transporter K02020 modA; molybdate transport system substrate-binding protein
D UGYR_15665 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D UGYR_15670 modC; molybdate transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D UGYR_03405 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D UGYR_04035 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D UGYR_03410 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D UGYR_04040 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D UGYR_03415 amino acid ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D UGYR_04045 fbpC; ferric transporter ATP-binding subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D UGYR_13045 tbpA; thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D UGYR_13040 thiP; thiamine ABC transporter permease K02063 thiP; thiamine transport system permease protein
D UGYR_13035 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D UGYR_16270 spermidine/putrescine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D UGYR_16285 spermidine/putrescine ABC transporter permease K11074 potI; putrescine transport system permease protein
D UGYR_16280 spermidine/putrescine ABC transporter permease K11075 potH; putrescine transport system permease protein
D UGYR_16275 potG; putrescine transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D UGYR_06455 proX; glycine/betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D UGYR_06450 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D UGYR_06445 glycine/betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D UGYR_15875 ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D UGYR_15880 osmoprotectant uptake system permease K05846 opuBD; osmoprotectant transport system permease protein
D UGYR_15890 osmoprotectant uptake system permease K05846 opuBD; osmoprotectant transport system permease protein
D UGYR_15885 ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D UGYR_08480 malE; sugar ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D UGYR_08485 malF; maltose transporter membrane protein K10109 malF; maltose/maltodextrin transport system permease protein
D UGYR_08490 malG; maltose transporter permease K10110 malG; maltose/maltodextrin transport system permease protein
D UGYR_08470 maltose/maltodextrin transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D UGYR_16040 sugar ABC transporter substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D UGYR_16050 mglC; beta-methylgalactoside transporter permease K10541 mglC; methyl-galactoside transport system permease protein
D UGYR_16045 sugar ABC transporter ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D UGYR_10150 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein
D UGYR_10155 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D UGYR_10160 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D UGYR_09035 glycerol-3-phosphate ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D UGYR_09030 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D UGYR_09025 glycerol-3-phosphate transporter membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D UGYR_09020 ugpC; glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D UGYR_07025 ABC transporter permease K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D UGYR_08070 phospholipid ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D UGYR_07035 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D UGYR_08075 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D UGYR_07030 iron ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D UGYR_08080 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D UGYR_07020 ABC transporter K18480 linN; cholesterol transport system auxiliary component
D UGYR_08065 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D UGYR_08060 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D UGYR_06370 LacI family transcriptional regulator K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D UGYR_06355 sugar ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein
D UGYR_06360 sugar ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein
D UGYR_06365 lipase K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D UGYR_10270 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_14330 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D UGYR_05600 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D UGYR_10275 pstC; phosphate transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D UGYR_05595 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D UGYR_10280 pstA; phosphate transporter permease subunit PtsA K02038 pstA; phosphate transport system permease protein
D UGYR_05590 pstB; phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UGYR_10285 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UGYR_15850 phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D UGYR_15855 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D UGYR_15860 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D UGYR_15845 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D UGYR_04905 amino acid ABC transporter permease K10015 hisM; histidine transport system permease protein
D UGYR_04910 amino acid ABC transporter permease K10016 hisQ; histidine transport system permease protein
D UGYR_04900 amino acid transporter K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_04915 histidine ABC transporter substrate-binding protein HisJ K10014 hisJ; histidine transport system substrate-binding protein
D UGYR_15945 glnH; glutamine ABC transporter substrate-bindnig protein K10036 glnH; glutamine transport system substrate-binding protein
D UGYR_15940 glnP; glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein
D UGYR_15935 glnQ; glutamine ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_16300 arginine ABC transporter substrate-binding protein K09996 artJ; arginine transport system substrate-binding protein
D UGYR_16315 arginine ABC transporter substrate-binding protein K09997 artI; arginine transport system substrate-binding protein
D UGYR_16305 artM; arginine transporter permease subunit ArtM K09998 artM; arginine transport system permease protein
D UGYR_16310 arginine transporter permease subunit ArtQ K09999 artQ; arginine transport system permease protein
D UGYR_16320 arginine ABC transporter ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_15215 amino acid transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D UGYR_15205 amino acid ABC transporter permease K10002 gltK; glutamate/aspartate transport system permease protein
D UGYR_15210 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D UGYR_15200 artP; arginine transporter ATP-binding subunit K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_03520 cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D UGYR_03515 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D UGYR_03510 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D UGYR_09090 leucine ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D UGYR_09085 branched-chain amino acid transporter permease subunit LivH K01997 livH; branched-chain amino acid transport system permease protein
D UGYR_09080 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D UGYR_09075 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein
D UGYR_09070 livF; leucine/isoleucine/valine transporter ATP-binding subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein
D UGYR_06555 metQ; DL-methionine transporter substrate-binding subunit K02073 metQ; D-methionine transport system substrate-binding protein
D UGYR_06550 DL-methionine transporter permease subunit K02072 metI; D-methionine transport system permease protein
D UGYR_06545 metN; DL-methionine transporter ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D UGYR_15710 branched-chain amino acid ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein
D UGYR_10295 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D UGYR_10300 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D UGYR_10305 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D UGYR_01345 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01350 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_02030 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D UGYR_01355 oppB; oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D UGYR_01360 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D UGYR_01365 oppD; oligopeptide transporter ATP-binding component K15583 oppD; oligopeptide transport system ATP-binding protein
D UGYR_01370 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UGYR_10655 peptide ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D UGYR_10660 hypothetical protein K12369 dppB; dipeptide transport system permease protein
D UGYR_10665 peptide transporter K12370 dppC; dipeptide transport system permease protein
D UGYR_10670 dppD; peptide ABC transporter ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D UGYR_10675 dppF; peptide ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D UGYR_02115 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D UGYR_02120 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D UGYR_02125 peptide ABC transporter permease K19228 sapC; cationic peptide transport system permease protein
D UGYR_02130 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D UGYR_02135 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D UGYR_04215 antibiotic ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D UGYR_04220 microcin ABC transporter permease K13894 yejB; microcin C transport system permease protein
D UGYR_04225 microcin ABC transporter permease K13895 yejE; microcin C transport system permease protein
D UGYR_04230 microcin ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D UGYR_02400 hemin ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D UGYR_02405 iron ABC transporter K25133 hmuU; heme transport system permease protein
D UGYR_02410 hmuV; hemin importer ATP-binding subunit K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D UGYR_07435 iron ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D UGYR_07445 ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D UGYR_07450 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D UGYR_07455 fecE; iron-dicitrate transporter ATP-binding subunit K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D UGYR_04100 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D UGYR_14260 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D UGYR_15730 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D UGYR_04095 iron-siderophore ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D UGYR_15735 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D UGYR_04090 iron ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D UGYR_15740 ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D UGYR_13435 Vitamin B12-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D UGYR_02470 vtamin B12-transporter permease K06073 btuC; vitamin B12 transport system permease protein
D UGYR_02465 vitamin B12 ABC transporter ATPase K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D UGYR_01015 znuA; zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D UGYR_01005 znuB; high-affinity zinc transporter membrane component K09816 znuB; zinc transport system permease protein
D UGYR_01010 znuC; zinc ABC transporter ATPase K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D UGYR_02595 iron-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D UGYR_02605 membrane protein K11605 sitC; manganese/iron transport system permease protein
D UGYR_02610 iron ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D UGYR_02600 iron ABC transporter permease K11607 sitB; manganese/iron transport system ATP-binding protein
D UGYR_12250 lipopolysaccharide ABC transporter permease K07091 lptF; lipopolysaccharide export system permease protein
D UGYR_12255 lipopolysaccharide ABC transporter permease K11720 lptG; lipopolysaccharide export system permease protein
D UGYR_08110 sugar ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D UGYR_15775 membrane protein K25180 ybhR; drug efflux transport system permease protein
D UGYR_15780 membrane protein K25181 ybhS; drug efflux transport system permease protein
D UGYR_15785 multidrug ABC transporter ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D UGYR_15790 membrane protein K25183 ybhG; membrane fusion protein YbhG
D UGYR_00365 outer membrane-specific lipoprotein transporter subunit LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein
D UGYR_00375 outer membrane-specific lipoprotein transporter subunit LolE K09808 lolC_E_F; lipoprotein-releasing system permease protein
D UGYR_00370 lolD; lipoprotein ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D UGYR_05130 hemagglutination activity protein K02196 ccmD; heme exporter protein D
D UGYR_05135 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D UGYR_05140 heme ABC transporter permease K02194 ccmB; heme exporter protein B
D UGYR_05145 cytochrome C biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D UGYR_09120 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D UGYR_09125 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D UGYR_13350 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D UGYR_13345 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D UGYR_14855 sugar ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D UGYR_14850 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D UGYR_02345 sufC; cysteine desulfurase K09013 sufC; Fe-S cluster assembly ATP-binding protein
D UGYR_01700 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D UGYR_02290 multidrug transporter K26939 norM; MATE family, multidrug efflux pump
D UGYR_13055 sugar transporter K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D UGYR_12875 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D UGYR_05200 membrane protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D UGYR_05360 sialic acid transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D UGYR_07890 hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D UGYR_05950 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D UGYR_14455 phosphoglycerate transporter K11382 pgtP; MFS transporter, OPA family, phosphoglycerate transporter protein
D UGYR_09200 glpT; sn-glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D UGYR_04030 MFS transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D UGYR_10645 MFS transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D UGYR_06910 lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D UGYR_07440 POT family transporter K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter
D UGYR_14510 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D UGYR_01155 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D UGYR_04240 bicyclomycin/multidrug efflux system K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D UGYR_09745 emrD; multidrug resistance protein D K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D UGYR_10570 multidrug transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D UGYR_00890 multidrug resistance protein MdtH K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D UGYR_02275 transporter K28371 punC; MFS transporter, DHA1 family, purine nucleoside transporter
D UGYR_06485 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D UGYR_02650 multidrug MFS transporter K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D UGYR_05675 transporter K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D UGYR_16450 MFS transporter K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D UGYR_11125 transporter K06141 tsgA; MFS transporter, TsgA protein
D UGYR_05325 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D UGYR_06885 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D UGYR_05320 PTS sugar transporter K02784 ptsH; phosphocarrier protein HPr
D UGYR_08135 phosphohistidinoprotein-hexose phosphotransferase K08485 ptsO; phosphocarrier protein NPr
D UGYR_04145 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D UGYR_05330 PTS system glucose-specific transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D UGYR_00315 PTS glucose-specific subunit IIBC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D UGYR_15310 PTS N-acetyl glucosamine transporter subunits IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D UGYR_06050 PTS sugar transporter subunit IIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D UGYR_08160 PTS system trehalose(maltose)-specific transporter subunits IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D UGYR_04135 PTS system fructose-specific transporter subunits IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D UGYR_10490 PTS system mannitol-specific transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D UGYR_03270 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D UGYR_03285 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D UGYR_03280 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D UGYR_07360 PTS system glucitol/sorbitol-specific transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D UGYR_07355 srlE; PTS system glucitol/sorbitol-specific transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D UGYR_07350 srlA; PTS system glucitol/sorbitol-specific transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
D UGYR_03035 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D UGYR_03040 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D UGYR_03045 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D UGYR_12580 PTS mannose transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D UGYR_12565 PTS system N-acetylgalactosamine-specific transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D UGYR_12570 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D UGYR_12575 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D UGYR_01870 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_04860 cmtB; PTS system mannitol-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D UGYR_01865 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04865 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D UGYR_04870 PTS beta-glucoside transporter subunit IIBC K03475 ulaA; ascorbate PTS system EIIC component
D UGYR_08125 PTS system nitrogen regulatory protein IIA(Ntr) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D UGYR_12675 dihydroxyacetone kinase K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D UGYR_09730 glycerol uptake facilitator GlpF K02440 glpF; glycerol uptake facilitator
D UGYR_03580 voltage-gated potassium channel TrkA K10716 kch; voltage-gated potassium channel
D UGYR_14605 ammonium transporter K03320 amt; ammonium transporter, Amt family
D UGYR_02180 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_08380 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_16190 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D UGYR_08015 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D UGYR_16465 formate transporter K06212 focA; formate transporter
D UGYR_11105 nitrite transporter NirC K02598 nirC; nitrite transporter
D UGYR_11470 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D UGYR_14660 hypothetical protein K05802 mscK; potassium-dependent mechanosensitive channel
D UGYR_11690 mechanosensitive channel protein K22051 mscM; miniconductance mechanosensitive channel
D UGYR_07165 mechanosensitive ion channel protein MscS K03442 mscS; small conductance mechanosensitive channel
D UGYR_05625 dihydroorotate dehydrogenase K06213 mgtE; magnesium transporter
D UGYR_15970 magnesium transporter K06213 mgtE; magnesium transporter
D UGYR_03870 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D UGYR_03865 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D UGYR_07565 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D UGYR_07560 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D UGYR_15540 colicin uptake protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D UGYR_15545 colicin uptake protein TolR K03560 tolR; biopolymer transport protein TolR
D UGYR_09245 magnesium transporter CorA K03284 corA; magnesium transporter
D UGYR_02025 zntB; zinc transporter K16074 zntB; zinc transporter
D UGYR_15110 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D UGYR_11905 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D UGYR_13985 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D UGYR_16595 porin K09476 ompF; outer membrane pore protein F
D UGYR_15915 membrane protein K11929 phoE; outer membrane pore protein E
D UGYR_04605 membrane protein K09475 ompC; outer membrane pore protein C
D UGYR_08465 lamB; maltoporin K02024 lamB; maltoporin
D UGYR_00070 membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D UGYR_15965 ompX; membrane protein K11934 ompX; outer membrane protein X
D UGYR_05095 long-chain fatty acid outer membrane transporter K06076 fadL; long-chain fatty acid transport protein
D UGYR_00735 fimbrial protein K07347 fimD; outer membrane usher protein
D UGYR_01430 pilin outer membrane usher protein SafC K07347 fimD; outer membrane usher protein
D UGYR_05645 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_06285 hypothetical protein K07347 fimD; outer membrane usher protein
D UGYR_10330 usher protein K07347 fimD; outer membrane usher protein
D UGYR_10470 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_09545 btuB; vitamin B12/cobalamin outer membrane transporter K16092 btuB; vitamin B12 transporter
D UGYR_09610 heme acquisition hemophore HasA K12545 hasA; heme acquisition protein HasA
D UGYR_09615 TonB-dependent receptor K16152 hasR; heme acquisition protein HasR
D UGYR_04085 outer membrane siderophore receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D UGYR_02390 ligand-gated channel protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D UGYR_07480 ferrichrysobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D UGYR_11135 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D UGYR_14265 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D UGYR_15725 membrane protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D UGYR_00510 peptidase K12538 hasF; outer membrane protein, type I secretion system
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_06665 outer membrane protein assembly protein YaeT K07277 SAM50; outer membrane protein insertion porin family
D UGYR_05820 membrane biogenesis protein K17713 bamB; outer membrane protein assembly factor BamB
D UGYR_05525 outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC
D UGYR_14055 membrane biogenesis protein K05807 bamD; outer membrane protein assembly factor BamD
D UGYR_06175 membrane biogenesis protein K06186 bamE; outer membrane protein assembly factor BamE
D UGYR_11915 membrane protein K07278 tamA; translocation and assembly module TamA
D UGYR_11920 translocation and assembly module TamB K09800 tamB; translocation and assembly module TamB
D UGYR_12515 membrane protein K22110 kdgM; oligogalacturonate-specific porin family protein
D UGYR_08105 lipopolysaccharide transporter K09774 lptA; lipopolysaccharide export system protein LptA
D UGYR_08100 lipopolysaccharide transporter K11719 lptC; lipopolysaccharide export system protein LptC
D UGYR_13005 LPS biosynthesis protein K04744 lptD; LPS-assembly protein
D UGYR_15185 LPS biosynthesis protein K03643 lptE; LPS-assembly lipoprotein
D UGYR_10720 cellulose synthase K20543 bcsC; cellulose synthase operon protein C
D UGYR_01195 MltA-interacting protein MipA K07274 mipA; MipA family protein
D UGYR_13790 hypothetical protein K13287 sipD; invasin D
D UGYR_02105 hypothetical protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D UGYR_06615 hypothetical protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D UGYR_15230 magnesium/cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D UGYR_08360 LrgA K06518 cidA; holin-like protein
D UGYR_16085 hypothetical protein K06518 cidA; holin-like protein
D UGYR_04105 lysine transporter K11733 lysP; lysine-specific permease
D UGYR_03140 aromatic amino acid transporter K11734 aroP; aromatic amino acid transport protein AroP
D UGYR_13270 aromatic amino acid transporter K11734 aroP; aromatic amino acid transport protein AroP
D UGYR_14340 proY; proline-specific permease K11736 proY; proline-specific permease ProY
D UGYR_03480 amino acid permease K11737 cycA; D-serine/D-alanine/glycine transporter
D UGYR_10615 proY; proline-specific permease K16234 hutT; histidine transporter
D UGYR_12140 potE; putrescine transporter K03756 potE; putrescine:ornithine antiporter
D UGYR_03490 cadB; lysine/cadaverine antiporter K03757 cadB; cadaverine:lysine antiporter
D UGYR_01905 arginine:ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D UGYR_03190 amino acid APC transporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D UGYR_03320 amino acid APC transporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D UGYR_15895 arginine:agmatin antiporter K03759 adiC; arginine:agmatine antiporter
D UGYR_03345 amino acid transporter K20265 gadC; glutamate:GABA antiporter
D UGYR_09780 fieF; ferrous iron transporter K13283 fieF; ferrous-iron efflux pump FieF
D UGYR_14640 multidrug transporter K18138 acrB; multidrug efflux pump
D UGYR_05470 multidrug transporter K18324 acrD; multidrug efflux pump
D UGYR_05665 multidrug transporter K07788 mdtB; multidrug efflux pump
D UGYR_05670 multidrug transporter K07789 mdtC; multidrug efflux pump
D UGYR_02010 multidrug DMT transporter K03297 emrE; small multidrug resistance pump
D UGYR_11655 multidrug transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D UGYR_01055 multidrug transporter K11742 mdtI; spermidine export protein MdtI
D UGYR_01050 spermidine export protein MdtJ K11743 mdtJ; spermidine export protein MdtJ
D UGYR_15370 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D UGYR_15960 threonine transporter K11939 rhtA; inner membrane transporter RhtA
D UGYR_09240 chloramphenical resistance permease RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D UGYR_02435 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D UGYR_01755 membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D UGYR_10845 gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter
D UGYR_09105 gluconate:proton symporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D UGYR_11585 C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D UGYR_14025 C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D UGYR_06385 lactate permease K03303 lutP; lactate permease
D UGYR_00535 calcium/sodium:proton antiporter K07300 chaA; Ca2+:H+ antiporter
D UGYR_08085 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter
D UGYR_10815 phosphate transporter PitA K16322 pit; low-affinity inorganic phosphate transporter
D UGYR_08320 panF; sodium/panthothenate symporter K14392 panF; sodium/pantothenate symporter
D UGYR_03500 proline:sodium symporter PutP K11928 putP; sodium/proline symporter
D UGYR_11545 actP; acetate permease K14393 actP; cation/acetate symporter
D UGYR_11560 glutamate:protein symporter K11102 gltP; proton glutamate symport protein
D UGYR_10730 C4-dicarboxylate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D UGYR_07865 serine/threonine protein kinase K07862 sstT; serine/threonine transporter
D UGYR_10015 sodium:glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D UGYR_12900 nhaA; pH-dependent sodium/proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D UGYR_01130 sodium:proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D UGYR_03310 sodium:proton antiporter K03315 nhaC; Na+:H+ antiporter, NhaC family
D UGYR_08370 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D UGYR_00145 cvrA; potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D UGYR_11250 potassium transporter KefB K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D UGYR_11245 potassium transporter KefG K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D UGYR_14745 cation:proton antiport protein K26735 KEA4_5_6; K+:H+ antiporter
D UGYR_08880 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D UGYR_11475 trkA; potassium transporter peripheral membrane component K03499 trkA; trk/ktr system potassium uptake protein
D UGYR_05565 uracil transporter K02824 uraA; uracil permease
D UGYR_10020 xanthine permease XanP K16345 xanP; xanthine permease XanP
D UGYR_08375 permase K06901 pbuG; adenine/guanine/hypoxanthine permease
D UGYR_10310 adenine permease PurP K06901 pbuG; adenine/guanine/hypoxanthine permease
D UGYR_05230 nucleoside permease K11535 nupC; nucleoside transport protein
D UGYR_04685 tyrosine transporter TyrP K03834 tyrP; tyrosine-specific transport protein
D UGYR_04170 tryptophan permease K03835 mtr; tryptophan-specific transport protein
D UGYR_16225 serine/threonine protein kinase K03837 sdaC; serine transporter
D UGYR_07400 septum site-determining protein K03838 tdcC; threonine transporter
D UGYR_12105 membrane protein K26604 cyuP; cysteine uptake transport protein
D UGYR_03975 citrate:succinate antiporter K09477 citT; citrate:succinate antiporter
D UGYR_01740 voltage-gated chloride channel protein ClcB K03281 clcA; chloride channel protein, CIC family
D UGYR_13420 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D UGYR_00630 nickel transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D UGYR_00825 transporter K03321 TC.SULP; sulfate permease, SulP family
D UGYR_05225 manganese transport protein MntH K03322 mntH; manganese transport protein
D UGYR_14955 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D UGYR_16120 dcuC; C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D UGYR_09375 O-antigen translocase K16693 wzxE; enterobacterial common antigen flippase
D UGYR_00910 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D UGYR_10170 trkD; potassium transport protein Kup K03549 kup; KUP system potassium uptake protein
D UGYR_07160 arginine exporter protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D UGYR_09220 threonine transporter K05835 rhtC; threonine efflux protein
D UGYR_12955 lysine transporter LysE K05835 rhtC; threonine efflux protein
D UGYR_10825 leucine export protein LeuE K11250 leuE; leucine efflux protein
D UGYR_14680 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D UGYR_14685 membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D UGYR_14690 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D UGYR_08220 p-hydroxybenzoic acid efflux subunit AaeB K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D UGYR_05545 permase K03548 perM; putative permease
D UGYR_09170 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D UGYR_14990 membrane protein K22736 VIT; vacuolar iron transporter family protein
D UGYR_02585 hypothetical protein K05595 marC; multiple antibiotic resistance protein
D UGYR_12885 hypothetical protein K07034 GPR1; acetate uptake transporter family protein
D UGYR_13160 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D UGYR_13115 membrane protein K28156 alaE; L-alanine exporter
D UGYR_03055 hypothetical protein K23242 mntP; manganese efflux pump family protein
D UGYR_05935 nickel transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D UGYR_08975 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D UGYR_16360 membrane protein K28370 lysO; lysine exporter
D UGYR_01450 energy transducer TonB K03832 tonB; periplasmic protein TonB
D UGYR_09595 hypothetical protein K03832 tonB; periplasmic protein TonB
D UGYR_15560 peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D UGYR_15550 membrane protein K03646 tolA; colicin import membrane protein
D UGYR_15555 tolB; translocation protein TolB K03641 tolB; TolB protein
D UGYR_05000 protein-disulfide reductase K08344 scsB; suppressor for copper-sensitivity B
D UGYR_04155 cytochrome C K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D UGYR_04160 trimethylamine N-oxide reductase I catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D UGYR_06480 multidrug transporter K03543 emrA; membrane fusion protein, multidrug efflux system
D UGYR_00505 hemolysin D K12537 hasE; membrane fusion protein, type I secretion system
D UGYR_09600 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system
D UGYR_14645 multidrug transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D UGYR_15655 membrane protein K25859 acrZ; accessory protein, multidrug efflux pump
D UGYR_05660 multidrug transporter K07799 mdtA; membrane fusion protein, multidrug efflux system
D UGYR_16375 macrolide transporter K13888 macA; membrane fusion protein, macrolide-specific efflux system
D UGYR_08225 p-hydroxybenzoic acid efflux subunit AaeA K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D UGYR_07970 membrane protein K28369 dolP; outer membrane lipoprotein DolP
D UGYR_15595 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D UGYR_10960 hypothetical protein K04758 feoA; ferrous iron transport protein A
D UGYR_10955 feoB; ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D UGYR_10950 ferrous iron transporter C K07490 feoC; ferrous iron transport protein C
D UGYR_00040 paraquat-inducible protein A K03808 pqiA; intermembrane transport protein PqiA/LetA
D UGYR_02675 membrane protein K03808 pqiA; intermembrane transport protein PqiA/LetA
D UGYR_00045 paraquat-inducible protein B K06192 pqiB; intermembrane transport protein PqiB/LetB
D UGYR_02680 hypothetical protein K06192 pqiB; intermembrane transport protein PqiB/LetB
D UGYR_00050 membrane protein K09857 pqiC; intermembrane transport lipoprotein PqiC
D UGYR_10810 universal stress protein UspB K06144 uspB; universal stress protein B
D UGYR_05120 cytochrome C biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D UGYR_02005 methyltransferase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D UGYR_03895 membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D UGYR_02950 copper resistance protein CopD K07245 pcoD; copper resistance protein D
D UGYR_02955 hypothetical protein K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:yrb02044]
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_00500 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_09605 peptidase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D UGYR_00505 hemolysin D K12537 hasE; membrane fusion protein, type I secretion system
D UGYR_09600 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system
D UGYR_00510 peptidase K12538 hasF; outer membrane protein, type I secretion system
D UGYR_13885 general secretion pathway protein GspC K02452 gspC; general secretion pathway protein C
D UGYR_07005 general secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D UGYR_13880 general secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D UGYR_07000 general secretion pathway protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D UGYR_13875 general secretion pathway protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D UGYR_06995 hypothetical protein K02455 gspF; general secretion pathway protein F
D UGYR_13870 type II secretion protein F K02455 gspF; general secretion pathway protein F
D UGYR_06990 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D UGYR_13865 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D UGYR_06985 hypothetical protein K02457 gspH; general secretion pathway protein H
D UGYR_13860 general secretion pathway protein GspH K02457 gspH; general secretion pathway protein H
D UGYR_13855 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I
D UGYR_06975 hypothetical protein K02459 gspJ; general secretion pathway protein J
D UGYR_13850 general secretion pathway protein GspJ K02459 gspJ; general secretion pathway protein J
D UGYR_06970 hypothetical protein K02460 gspK; general secretion pathway protein K
D UGYR_13845 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K
D UGYR_06965 hypothetical protein K02461 gspL; general secretion pathway protein L
D UGYR_13840 general secretion pathway protein GspL K02461 gspL; general secretion pathway protein L
D UGYR_13835 general secretion pathway protein GspM K02462 gspM; general secretion pathway protein M
D UGYR_13830 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D UGYR_13825 secretion protein K02465 gspS; general secretion pathway protein S
D UGYR_05845 pilus assembly protein PilW K02656 pilF; type IV pilus assembly protein PilF
D UGYR_07260 hypothetical protein K02669 pilT; twitching motility protein PilT
D UGYR_07500 tight adherance operon protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D UGYR_07505 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D UGYR_07510 secretin K02280 cpaC; pilus assembly protein CpaC
D UGYR_07520 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D UGYR_07525 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D UGYR_07530 hypothetical protein K12510 tadB; tight adherence protein B
D UGYR_07535 hypothetical protein K12511 tadC; tight adherence protein C
D UGYR_07540 tight adherance operon protein K12512 tadD; tight adherence protein D
D UGYR_07545 hypothetical protein K12513 tadE; tight adherence protein E
D UGYR_07550 hypothetical protein K12514 tadF; tight adherence protein F
D UGYR_06865 N-terminal cleavage protein K02679 ppdA; prepilin peptidase dependent protein A
D UGYR_06860 N-terminal cleavage protein K02680 ppdB; prepilin peptidase dependent protein B
D UGYR_06850 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C
D UGYR_13250 major pilin subunit K02682 ppdD; prepilin peptidase dependent protein D
D UGYR_13245 transporter HofB K02504 hofB; protein transport protein HofB
D UGYR_13240 type IV pilin biogenesis protein K02505 hofC; protein transport protein HofC
D UGYR_11040 pilus assembly protein HofM K12288 hofM; pilus assembly protein HofM
D UGYR_11045 hypothetical protein K12289 hofN; pilus assembly protein HofN
D UGYR_11050 hypothetical protein K12290 hofO; pilus assembly protein HofO
D UGYR_11055 hypothetical protein K12291 hofP; pilus assembly protein HofP
D UGYR_11060 hofQ; porin K02507 hofQ; protein transport protein HofQ
D UGYR_07275 membrane protein K02221 yggT; YggT family protein
D UGYR_14555 hypothetical protein K02237 comEA; competence protein ComEA
D UGYR_16505 competence protein ComEC K02238 comEC; competence protein ComEC
D UGYR_13700 hypothetical protein K03221 yscF; type III secretion protein F
D UGYR_13750 hypothetical protein K03225 yscQ; type III secretion protein Q
D UGYR_13725 type III secretion system protein InvA K03230 yscV; type III secretion protein V
D UGYR_13715 type III secretion system protein K22504 invG; type III secretion system outer membrane ring protein
D UGYR_13690 type III secretion protein K22505 prgK; type III secretion system inner membrane ring protein
D UGYR_13735 ATP synthase K22506 spaL; type III secretion system ATPase [EC:7.4.2.8]
D UGYR_13755 type III secretion system protein K22507 spaP; type III secretion system export apparatus protein
D UGYR_13760 type III secretion apparatus protein K22508 spaQ; type III secretion system export apparatus protein
D UGYR_13765 type III secretion system protein K22509 spaR; type III secretion system export apparatus protein
D UGYR_13770 type III secretion system protein K22510 spaS; type III secretion system export apparatus switch protein
D UGYR_13720 hypothetical protein K22511 invE; type III secretion system protein
D UGYR_13730 type III secretion system protein K22512 spaK; type III secretion system chaperone
D UGYR_13705 hypothetical protein K22488 prgH; type III secretion system protein
D UGYR_13695 hypothetical protein K22487 prgJ; type III secretion system protein
D UGYR_03745 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D UGYR_03750 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D UGYR_03600 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D UGYR_03610 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D UGYR_03615 fliI; ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D UGYR_03640 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D UGYR_03645 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D UGYR_03650 fliP; flagellar biosynthesis protein flip K02419 fliP; flagellar biosynthesis protein FliP
D UGYR_03655 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D UGYR_03660 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D UGYR_07060 protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D UGYR_00915 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_08510 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_00920 hypothetical protein K11016 shlA; hemolysin
D UGYR_08515 hemolysin K11016 shlA; hemolysin
D UGYR_05635 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_10320 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_10335 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_11635 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_11650 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_00740 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_05640 fimbrial assembly protein K07346 fimC; fimbrial chaperone protein
D UGYR_06280 hypothetical protein K07346 fimC; fimbrial chaperone protein
D UGYR_10325 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_10475 CsuC protein K07346 fimC; fimbrial chaperone protein
D UGYR_11640 fimbrial protein K07346 fimC; fimbrial chaperone protein
D UGYR_00735 fimbrial protein K07347 fimD; outer membrane usher protein
D UGYR_01430 pilin outer membrane usher protein SafC K07347 fimD; outer membrane usher protein
D UGYR_05645 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_06285 hypothetical protein K07347 fimD; outer membrane usher protein
D UGYR_10330 usher protein K07347 fimD; outer membrane usher protein
D UGYR_10470 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_10465 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10480 fimbrial protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10485 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_03780 fimbrial assembly protein K12518 papC; outer membrane usher protein PapC
D UGYR_11645 pilus assembly protein K12518 papC; outer membrane usher protein PapC
D UGYR_14900 fimbrial assembly protein K12518 papC; outer membrane usher protein PapC
D UGYR_03785 molecular chaperone K12519 papD; chaperone protein PapD
D UGYR_14905 molecular chaperone K12519 papD; chaperone protein PapD
D UGYR_13210 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UGYR_09815 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D UGYR_14380 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D UGYR_08805 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D UGYR_14385 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D UGYR_12040 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D UGYR_13205 Secretion monitor K13301 secM; secretion monitor
D UGYR_11425 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D UGYR_13995 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D UGYR_09130 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UGYR_14375 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D UGYR_10345 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UGYR_08945 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D UGYR_08940 translocase K03117 tatB; sec-independent protein translocase protein TatB
D UGYR_08935 twin-arginine protein translocation system subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D UGYR_15125 preprotein translocase subunit TatA K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:yrb02042]
D UGYR_02105 hypothetical protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D UGYR_06615 hypothetical protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D UGYR_03210 hypothetical protein K11014 cdtB; cytolethal distending toxin subunit B
D UGYR_09935 C4-dicarboxylate ABC transporter K11041 eta; exfoliative toxin A/B
D UGYR_06330 toxin K11021 tccC; insecticidal toxin complex protein TccC
D UGYR_11905 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D UGYR_13985 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D UGYR_00920 hypothetical protein K11016 shlA; hemolysin
D UGYR_08515 hemolysin K11016 shlA; hemolysin
D UGYR_00915 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_08510 hemolysin activation protein K11017 shlB; hemolysin activation/secretion protein
D UGYR_07090 hemolysin K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:yrb02022]
D UGYR_14325 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D UGYR_14320 transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D UGYR_00400 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D UGYR_00405 transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D UGYR_11000 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D UGYR_10995 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D UGYR_01920 sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D UGYR_01915 transcriptional regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D UGYR_09795 cpxA; two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D UGYR_09790 transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D UGYR_05680 histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D UGYR_05685 transcriptional regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D UGYR_11995 sensor protein BasS/PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D UGYR_12000 XRE family transcriptional regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D UGYR_15380 sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D UGYR_15375 transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D UGYR_07985 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D UGYR_12840 TorR family transcriptional regulator K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D UGYR_14700 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D UGYR_14695 transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D UGYR_00545 nitrate/nitrite sensor protein NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D UGYR_05460 transcriptional regulator NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D UGYR_10640 histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D UGYR_10635 transcriptional regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D UGYR_04025 histidine kinase K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D UGYR_04020 transcriptional regulator K20264 fusR; two-component system, NarL family, response regulator FusR
D UGYR_04625 histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D UGYR_04615 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D UGYR_04620 transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D UGYR_13455 histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D UGYR_03460 sirA; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D UGYR_15600 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D UGYR_13655 LuxR family transcriptional regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D UGYR_15605 feruloyl-CoA synthase K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D UGYR_04010 histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D UGYR_04015 dpiA; two-component response regulator DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB
D UGYR_00480 histidine kinase K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D UGYR_00475 transcriptional regulator K07703 dcuR; two-component system, CitB family, response regulator DcuR
D UGYR_10865 histidine kinase K27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_14030 response regulator K27883 btsR; two-component system, LytTR family, low-concentration pyruvate response regulator
D UGYR_05190 membrane protein K27884 pyrS; two-component system, LytTR family, high-concentration pyruvate sensor kinase [EC:2.7.13.3]
D UGYR_05195 LytTR family transcriptional regulator K27885 pyrR; two-component system, LytTR family, high-concentration pyruvate response regulator
D UGYR_10060 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D UGYR_10065 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D UGYR_06015 histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D UGYR_06005 response regulator GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D UGYR_14445 histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D UGYR_14440 transcriptional regulator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA
D UGYR_03860 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D UGYR_03830 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D UGYR_03835 chemotaxis protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D UGYR_01310 response regulator of RpoS K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:yrb02035]
D UGYR_03860 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D UGYR_03855 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D UGYR_03840 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D UGYR_03835 chemotaxis protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D UGYR_03830 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D UGYR_03825 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D UGYR_10315 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_15345 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D UGYR_03425 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_03850 chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D UGYR_10515 chemotaxis protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D UGYR_03900 chemotaxis protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D UGYR_03845 methyl-accepting protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D UGYR_03610 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D UGYR_03615 fliI; ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D UGYR_03620 fliJ; flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D UGYR_03645 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D UGYR_03650 fliP; flagellar biosynthesis protein flip K02419 fliP; flagellar biosynthesis protein FliP
D UGYR_03655 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D UGYR_03660 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D UGYR_03745 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D UGYR_03750 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D UGYR_03740 flagellar protein flhE K03516 flhE; flagellar protein FlhE
D UGYR_03605 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG
D UGYR_03635 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D UGYR_03640 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D UGYR_03600 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D UGYR_03680 flgI; flagellar basal body P-ring biosynthesis protein FlgA K02394 flgI; flagellar P-ring protein FlgI
D UGYR_03720 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D UGYR_03685 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D UGYR_03630 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D UGYR_03595 flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D UGYR_03625 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D UGYR_03715 flagellar biosynthesis protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D UGYR_03710 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D UGYR_03705 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D UGYR_03695 flgF; flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D UGYR_03690 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D UGYR_03675 flgJ; flagellar rod assembly protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D UGYR_03700 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D UGYR_03670 flgK; flagellar hook protein FlgK K02396 flgK; flagellar hook-associated protein 1
D UGYR_03665 flgL; flagellar hook protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D UGYR_03730 flagellar biosynthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D UGYR_03540 flagellin K02406 fliC; flagellin
D UGYR_03545 flagellin K02406 fliC; flagellin
D UGYR_03550 flagellin K02406 fliC; flagellin
D UGYR_03555 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D UGYR_03560 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D UGYR_03565 flagellar biosynthesis protein FliT K02423 fliT; flagellar protein FliT
D UGYR_03880 transcriptional regulator K02403 flhD; flagellar transcriptional activator FlhD
D UGYR_03875 transcriptional regulator K02402 flhC; flagellar transcriptional activator FlhC
D UGYR_03535 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D UGYR_03870 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D UGYR_03865 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D UGYR_03520 cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D UGYR_03530 flagellar biosynthesis protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D UGYR_03725 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D UGYR_07260 hypothetical protein K02669 pilT; twitching motility protein PilT
D UGYR_05845 pilus assembly protein PilW K02656 pilF; type IV pilus assembly protein PilF
D UGYR_07500 tight adherance operon protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D UGYR_07505 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D UGYR_07510 secretin K02280 cpaC; pilus assembly protein CpaC
D UGYR_07520 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D UGYR_07525 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D UGYR_05635 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_10320 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_10335 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_11635 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_11650 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D UGYR_00740 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_05640 fimbrial assembly protein K07346 fimC; fimbrial chaperone protein
D UGYR_06280 hypothetical protein K07346 fimC; fimbrial chaperone protein
D UGYR_10325 fimbrial chaperone protein K07346 fimC; fimbrial chaperone protein
D UGYR_10475 CsuC protein K07346 fimC; fimbrial chaperone protein
D UGYR_11640 fimbrial protein K07346 fimC; fimbrial chaperone protein
D UGYR_00735 fimbrial protein K07347 fimD; outer membrane usher protein
D UGYR_01430 pilin outer membrane usher protein SafC K07347 fimD; outer membrane usher protein
D UGYR_05645 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_06285 hypothetical protein K07347 fimD; outer membrane usher protein
D UGYR_10330 usher protein K07347 fimD; outer membrane usher protein
D UGYR_10470 fimbrial assembly protein K07347 fimD; outer membrane usher protein
D UGYR_10465 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10480 fimbrial protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D UGYR_10485 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:yrb04812]
D UGYR_08275 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D UGYR_13190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D UGYR_13185 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D UGYR_01100 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC
D UGYR_01095 cell division inhibitor MinD K03609 minD; septum site-determining protein MinD
D UGYR_01090 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:yrb04147]
D UGYR_14720 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D UGYR_13480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UGYR_01210 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D UGYR_07175 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D UGYR_01030 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_02315 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UGYR_11155 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D UGYR_14355 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D UGYR_11605 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D UGYR_12890 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D UGYR_08500 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D UGYR_05805 inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D UGYR_08810 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_11310 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D UGYR_00320 purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D UGYR_01700 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D UGYR_01080 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_13085 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D UGYR_14725 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D UGYR_11200 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UGYR_14675 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UGYR_09620 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D UGYR_09625 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D UGYR_16205 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D UGYR_01810 amino acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D UGYR_11935 fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D UGYR_15630 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D UGYR_10870 glycogen branching protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D UGYR_09735 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D UGYR_10055 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D UGYR_08925 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D UGYR_07140 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D UGYR_08695 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D UGYR_09580 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_13290 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D UGYR_01040 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D UGYR_09765 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UGYR_15615 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D UGYR_11660 membrane protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:yrb02048]
D UGYR_12270 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D UGYR_12280 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D UGYR_12275 SAM-dependent methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D UGYR_11080 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D UGYR_12415 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UGYR_04425 holin K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D UGYR_12300 restriction endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D UGYR_12295 restriction endonuclease K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D UGYR_07795 hypothetical protein K19048 symE; toxic protein SymE
D UGYR_12460 RelE-like toxin protein K06218 relE; mRNA interferase RelE/StbE
D UGYR_12455 bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D UGYR_05170 antitoxin HicB K18843 hicB; antitoxin HicB
D UGYR_02080 transcriptional regulator K03973 pspC; phage shock protein C
D UGYR_02085 pspB; phage shock protein K03970 pspB; phage shock protein B
D UGYR_00210 bssS; biofilm formation regulatory protein BssS K12148 bssS; biofilm regulator BssS
D UGYR_13190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D UGYR_08275 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D UGYR_07610 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UGYR_07625 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D UGYR_05265 gltX; glutamyl-tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D UGYR_12355 hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D UGYR_12360 hypothetical protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D UGYR_07075 membrane protein K19168 cptA; toxin CptA
D UGYR_07080 hypothetical protein K09159 cptB; antitoxin CptB
D UGYR_02720 membrane protein K28274 ortT; orphan toxin OrtT
D UGYR_14620 gene expression modulator K05839 hha; haemolysin expression modulating protein
D UGYR_14625 Biofilm formation regulator YbaJ K19162 tomB; hha toxicity modulator TomB
D UGYR_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:yrb01504]
D UGYR_10570 multidrug transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D UGYR_10565 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D UGYR_00400 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D UGYR_00405 transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D UGYR_14645 multidrug transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D UGYR_14640 multidrug transporter K18138 acrB; multidrug efflux pump
D UGYR_14820 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D UGYR_07650 membrane protein K12340 tolC; outer membrane protein
D UGYR_16595 porin K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:yrb00536]
D UGYR_07825 adhesin K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:yrb03200]
D UGYR_04435 endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:yrb03100]
D UGYR_05275 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_05280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_09525 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_11530 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_14085 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UGYR_05150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_09350 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13950 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_13960 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_14945 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UGYR_03960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_03965 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_04055 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D UGYR_09510 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_14100 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_14135 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D UGYR_03440 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D UGYR_15255 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_15265 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_15270 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UGYR_06530 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_08685 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_08865 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_10125 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UGYR_03445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_07040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_08820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11710 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11715 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_11720 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UGYR_09345 tRNA-His K14226 tRNA-His; tRNA His
D UGYR_09530 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_11525 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_14080 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UGYR_03435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_09340 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12260 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12695 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12700 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_12705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_15275 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UGYR_03475 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_05240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15570 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15575 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15580 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_15585 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UGYR_06805 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_06810 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_06815 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_07740 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_12050 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_15260 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_15280 tRNA-Met K14230 tRNA-Met; tRNA Met
D UGYR_07330 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D UGYR_11565 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D UGYR_04285 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_09335 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_10650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UGYR_00135 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_00845 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_00855 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_03950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_04600 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_13945 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UGYR_04595 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08670 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08815 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_08830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UGYR_09505 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D UGYR_01285 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_01290 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_08825 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UGYR_02300 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_02305 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_02310 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05245 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05250 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_05255 tRNA-Val K14237 tRNA-Val; tRNA Val
D UGYR_06535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_08870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_09535 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_10130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_11520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_14075 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UGYR_06525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08680 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_08860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_09520 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_10120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_11535 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_14090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D UGYR_06520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08665 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08675 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_08855 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_09515 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_10115 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_11540 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_14095 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UGYR_16605 bacterial RNase P K01978 rnpB; RNase P catalytic RNA component
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D UGYR_07590 dkgA; 2,5-diketo-D-gluconic acid reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D UGYR_12605 sulfatase K24118 atsB; serine-type anaerobic sulfatase-maturating enzyme [EC:1.1.98.7]
D UGYR_07835 fadH; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D UGYR_00205 solA; N-methyltryptophan oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D UGYR_08415 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D UGYR_07615 NADPH quinone reductase MdaB K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D UGYR_01965 FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D UGYR_11910 methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D UGYR_01215 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D UGYR_04890 GSH-dependent disulfide bond oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D UGYR_08290 TMAO/DMSO reductase K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D UGYR_13895 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D UGYR_14995 hydrogenase K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D UGYR_05540 bcp; thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D UGYR_02045 tpx; peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D UGYR_05390 peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D UGYR_10835 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D UGYR_05960 dihydropteridine reductase K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D UGYR_02960 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D UGYR_13330 multicopper oxidase K14588 cueO; cuproxidase [EC:1.16.3.4]
D UGYR_09750 ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D UGYR_05555 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D UGYR_14960 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D UGYR_12210 ribonucleoside-triphosphate reductase K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D UGYR_16455 pflA; pyruvate formate lyase-activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D UGYR_16350 HCP oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D UGYR_13575 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D UGYR_02280 cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D UGYR_07770 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D UGYR_15955 trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D UGYR_01690 tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D UGYR_00155 opgC; glucans biosynthesis protein K11941 mdoC; glucans biosynthesis protein C [EC:2.1.-.-]
D UGYR_15225 lnt; apolipoprotein acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D UGYR_12130 acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D UGYR_10435 acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D UGYR_12230 acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D UGYR_16405 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D UGYR_06500 DTW domain-containing protein YfiP K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D UGYR_06880 diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D UGYR_14190 thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D UGYR_02380 phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D UGYR_07685 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D UGYR_00840 membrane protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65]
D UGYR_02415 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D UGYR_08645 aceK; isocitrate dehydrogenase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D UGYR_07475 enterochelin esterase K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D UGYR_15535 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D UGYR_01520 S-adenosylmethionine tRNA ribosyltransferase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D UGYR_05075 phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D UGYR_04210 phage resistance protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D UGYR_10725 biofilm formation regulator HmsP K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D UGYR_07225 DNA-specific endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D UGYR_00310 DNAse K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D UGYR_08930 DNase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D UGYR_12740 deoxyribonuclease YjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D UGYR_15355 acyl-CoA esterase K01175 ybfF; esterase [EC:3.1.-.-]
D UGYR_14220 frsA; fermentation/respiration switch protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D UGYR_10715 endo-1,4-D-glucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D UGYR_01270 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D UGYR_02840 glycoside hydrolase K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D UGYR_11490 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D UGYR_03260 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D UGYR_02990 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D UGYR_08150 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D UGYR_07690 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D UGYR_14575 thiamin pyrimidine pyrophosphate hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D UGYR_05425 GDP-mannose pyrophosphatase K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D UGYR_00245 septum formation inhibitor Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D UGYR_10175 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D UGYR_01805 hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D UGYR_01625 fructose-6-phosphate aldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D UGYR_11730 carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D UGYR_12535 chondroitin lyase K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D UGYR_06785 cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D UGYR_12510 N-acetylneuraminic acid mutarotase K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D UGYR_07380 arabinose 5-phosphate isomerase K02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13]
D UGYR_11940 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D UGYR_01655 electron transporter RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D UGYR_01665 electron transporter RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D UGYR_01670 electron transporter RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D UGYR_14160 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D UGYR_14165 Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D UGYR_14170 Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D UGYR_14175 Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D UGYR_14180 Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D UGYR_14185 Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D UGYR_09160 zntA; zinc ABC transporter ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D UGYR_08170 magnesium ABC transporter ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D UGYR_13395 transcriptional regulator K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D UGYR_10525 formate dehydrogenase K02379 fdhD; FdhD protein
D UGYR_04650 2Fe-2S ferredoxin K11107 yfaE; ferredoxin
D UGYR_01650 electron transporter RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D UGYR_01645 elongation factor G K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D UGYR_01675 electron transporter RsxA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D UGYR_00645 effector protein K05796 hydN; electron transport protein HydN
D UGYR_10200 FMN-binding protein MioC K06205 mioC; MioC protein
D UGYR_07070 flavodoxin FldB K03840 fldB; flavodoxin II
D UGYR_05910 scaffolding protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D UGYR_08190 cytochrome B562 K15536 cybC; soluble cytochrome b562
D UGYR_00685 formate hydrogenlyase K15827 hycB; formate hydrogenlyase subunit 2
D UGYR_00680 NADH dehydrogenase K15828 hycC; formate hydrogenlyase subunit 3
D UGYR_00675 hycD; hydrogenase 3 membrane subunit K15829 hycD; formate hydrogenlyase subunit 4
D UGYR_00670 hycE; hydrogenase 3 large subunit K15830 hycE; formate hydrogenlyase subunit 5
D UGYR_00665 formate hydrogenlyase complex iron-sulfur subunit K15831 hycF; formate hydrogenlyase subunit 6
D UGYR_00660 hydrogenase K15832 hycG; formate hydrogenlyase subunit 7
D UGYR_05445 nitrate reductase K02570 napD; periplasmic nitrate reductase NapD
D UGYR_05450 ferredoxin K02572 napF; ferredoxin-type protein NapF
D UGYR_15340 flavodoxin FldA K03839 fldA; flavodoxin I
D UGYR_05430 cytochrome C K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D UGYR_06430 nrdI; ribonucleotide reductase stimulatory protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D UGYR_05310 sulfate transporter K06203 cysZ; CysZ protein
D UGYR_06610 lyase K08234 yaeR; glyoxylase I family protein
D UGYR_02035 murein peptide amidase A K14054 mpaA; murein peptide amidase A
D UGYR_07265 hypothetical protein K06997 yggS; PLP dependent protein
D UGYR_12110 membrane protein K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D UGYR_01590 membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D UGYR_01595 tetratricopeptide repeat protein K19804 lapB; lipopolysaccharide assembly protein B
D UGYR_10710 cellulose synthase K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D UGYR_09325 protoheme IX biogenesis protein K02498 hemY; HemY protein
D UGYR_08950 ubiB; ubiquinone biosynthesis protein UbiB K03688 ubiB; ubiquinone biosynthesis protein
D UGYR_08955 membrane protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D UGYR_07675 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D UGYR_10110 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D UGYR_07600 cell division protein FtsI K04753 sufI; suppressor of ftsI
C 99999 Others
D UGYR_07935 membrane protein K15977 K15977; putative oxidoreductase
D UGYR_05505 hydrolase K06999 K06999; phospholipase/carboxylesterase
D UGYR_06505 protein acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D UGYR_07370 transcriptional regulator K02466 gutM; glucitol operon activator protein
D UGYR_08205 hypothetical protein K03623 yhcO; ribonuclease inhibitor
D UGYR_03130 cold-shock protein K03704 cspA; cold shock protein
D UGYR_03245 cold-shock protein K03704 cspA; cold shock protein
D UGYR_03250 cold-shock protein K03704 cspA; cold shock protein
D UGYR_03910 cold-shock protein K03704 cspA; cold shock protein
D UGYR_06400 cold-shock protein K03704 cspA; cold shock protein
D UGYR_15105 cold-shock protein K03704 cspA; cold shock protein
D UGYR_16385 stationary phase/starvation inducible regulatory protein CspD K03704 cspA; cold shock protein
D UGYR_16525 cold-shock protein K03704 cspA; cold shock protein
D UGYR_16530 cold-shock protein K03704 cspA; cold shock protein
D UGYR_08735 regulator of sigma D K07740 rsd; regulator of sigma D
D UGYR_00690 formate hydrogenlyase K15833 hycA; formate hydrogenlyase regulatory protein HycA
D UGYR_00655 formate hydrogenlyase maturation protein HycH K15834 hycH; formate hydrogenlyase maturation protein HycH
D UGYR_14600 nitrogen regulatory protein P-II 1 K04752 glnK; nitrogen regulatory protein P-II 2
D UGYR_10965 transcription accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D UGYR_01995 heat-inducible protein K03668 hslJ; heat shock protein HslJ
D UGYR_16390 clpS; Clp protease ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D UGYR_14525 trigger factor K03545 tig; trigger factor
D UGYR_08295 sulfite oxidase subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D UGYR_10550 formate dehydrogenase K02380 fdhE; FdhE protein
D UGYR_06190 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D UGYR_00705 hydrogenase assembly chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D UGYR_00710 hydrogenase isoenzymes formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D UGYR_00715 carbamoyl dehydratase HypE K04655 hypE; hydrogenase expression/formation protein HypE
D UGYR_00635 carbamoyl phosphate phosphatase K04656 hypF; hydrogenase maturation protein HypF
D UGYR_06425 glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH
D UGYR_09490 ATP-dependent protease K07391 comM; magnesium chelatase family protein
D UGYR_06945 protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase
D UGYR_11180 hypothetical protein K07397 yhfA; putative redox protein
D UGYR_10930 Fe/S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D UGYR_14615 methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D UGYR_06760 flap endonuclease-like protein K01146 xni; protein Xni
D UGYR_09900 hypothetical protein K03630 radC; DNA repair protein RadC
D UGYR_08965 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D UGYR_06220 chromosome segregation protein SMC K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D UGYR_16365 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D UGYR_07960 hypothetical protein K07460 yraN; putative endonuclease
D UGYR_12135 GIY-YIG nuclease K07461 K07461; putative endonuclease
D UGYR_11495 DNA processing protein DprA K04096 smf; DNA processing protein
D UGYR_01835 2-hydroxyacid dehydrogenase K07470 sbmC; DNA gyrase inhibitor
D UGYR_16440 recombination factor protein RarA K07478 ycaJ; putative ATPase
D UGYR_06205 transposase K07483 K07483; transposase
D UGYR_06340 transposase K07483 K07483; transposase
D UGYR_12380 transposase K07483 K07483; transposase
D UGYR_13630 hypothetical protein K07483 K07483; transposase
D UGYR_13105 transposase K07491 rayT; REP-associated tyrosine transposase
D UGYR_08520 transposase K07493 K07493; putative transposase
D UGYR_13110 transposase K07496 K07496; putative transposase
D UGYR_00830 transposase K07497 K07497; putative transposase
D UGYR_00835 transposase K07497 K07497; putative transposase
D UGYR_05005 transposase K07497 K07497; putative transposase
D UGYR_05010 transposase K07497 K07497; putative transposase
D UGYR_05770 transposase K07497 K07497; putative transposase
D UGYR_05775 transposase K07497 K07497; putative transposase
D UGYR_06200 transposase K07497 K07497; putative transposase
D UGYR_06245 transposase K07497 K07497; putative transposase
D UGYR_06250 transposase K07497 K07497; putative transposase
D UGYR_07810 transposase K07497 K07497; putative transposase
D UGYR_07815 transposase K07497 K07497; putative transposase
D UGYR_09950 transposase K07497 K07497; putative transposase
D UGYR_09955 transposase K07497 K07497; putative transposase
D UGYR_10580 transposase K07497 K07497; putative transposase
D UGYR_12385 transposase K07497 K07497; putative transposase
D UGYR_12435 transposase K07497 K07497; putative transposase
D UGYR_12440 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D UGYR_02090 phage shock protein K03969 pspA; phage shock protein A
D UGYR_02075 phage-shock protein K03971 pspD; phage shock protein D
D UGYR_14710 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D UGYR_09355 D-alanine/D-serine/glycine permease K03293 TC.AAT; amino acid transporter, AAT family
D UGYR_00175 amino acid transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D UGYR_00860 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D UGYR_01000 tppB; peptide ABC transporter permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D UGYR_02145 tppB; peptide ABC transporter permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D UGYR_14335 branched-chain amino acid ABC transporter substrate-binding protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D UGYR_09970 nucleoside permease K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D UGYR_12745 nucleoside transporter NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D UGYR_00485 2-oxoglutarate translocator K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D UGYR_10410 transporter K07085 K07085; putative transport protein
D UGYR_16250 transporter K07085 K07085; putative transport protein
C 99978 Cell growth
D UGYR_01460 intracellular septation protein A K06190 ispZ; intracellular septation protein
D UGYR_09175 lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D UGYR_11880 iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D UGYR_01140 SpoVR family protein K06415 spoVR; stage V sporulation protein R
D UGYR_09835 peptidase M37 K22719 envC; murein hydrolase activator
C 99993 Cell motility
D UGYR_00330 penicillin-binding protein K07337 K07337; penicillin-binding protein activator
D UGYR_00080 competence-specific regulator K07343 tfoX; DNA transformation protein and related proteins
D UGYR_06745 secretion protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D UGYR_13265 regulatory protein AmpE K03807 ampE; AmpE protein
D UGYR_02665 prop expression regulator K03607 proQ; ProP effector
D UGYR_10805 universal stress global response regulator UspA K06149 uspA; universal stress protein A
D UGYR_03890 universal stress protein UspC K14064 uspC; universal stress protein C
D UGYR_01850 universal stress protein UspE K14055 uspE; universal stress protein E
D UGYR_10050 GTP-binding protein TypA K06207 typA; GTP-binding protein
D UGYR_00530 hypothetical protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D UGYR_15240 nucleoside triphosphate hydrolase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D UGYR_01190 serine/threonine protein kinase K07180 prkA; serine protein kinase
D UGYR_07695 hypothetical protein K07184 ygiM; SH3 domain protein
D UGYR_12770 hypothetical protein K07186 smp; membrane protein
D UGYR_14470 nucleotide-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D UGYR_16435 lolA; lipoprotein chaperone K03634 lolA; outer membrane lipoprotein carrier protein
D UGYR_00790 membrane protein K02494 lolB; outer membrane lipoprotein LolB
D UGYR_05100 ABC transporter permease K04754 mlaA; phospholipid-binding lipoprotein MlaA
D UGYR_09410 lipopolysaccharide biosynthesis protein WzzE K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D UGYR_02205 membrane protein K06077 slyB; outer membrane lipoprotein SlyB
D UGYR_06660 molecular chaperone K06142 hlpA; outer membrane protein
D UGYR_13580 peptidase K06194 nlpD; lipoprotein NlpD
D UGYR_12090 lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D UGYR_01480 membrane protein K07275 ompW; outer membrane protein
D UGYR_14020 membrane protein K07283 ydiY; putative salt-induced outer membrane protein
D UGYR_01075 membrane protein K07285 slp; outer membrane lipoprotein
D UGYR_14515 hypothetical protein K07286 yajG; uncharacterized lipoprotein
D UGYR_16115 membrane assembly protein AsmA K07289 asmA; AsmA protein
D UGYR_14825 membrane protein K07340 ybbJ; inner membrane protein
D UGYR_00195 tqsA; pheromone autoinducer 2 transporter K11744 tqsA; AI-2 transport protein TqsA
D UGYR_01620 lipoprotein K04062 osmB; osmotically inducible lipoprotein OsmB
D UGYR_05125 cytochrome C biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D UGYR_05110 hypothetical protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D UGYR_05840 cytoskeletal protein RodZ K15539 rodZ; cytoskeleton protein RodZ
D UGYR_08230 transporter K21695 aaeX; protein AaeX
C 99994 Others
D UGYR_10290 transcriptional regulator PhoU K02039 phoU; phosphate transport system protein
D UGYR_00160 mdoG; glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D UGYR_11580 cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D UGYR_00940 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D UGYR_12185 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D UGYR_12985 apaG; heavy metal transporter K06195 apaG; ApaG protein
D UGYR_09300 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D UGYR_02395 hemin transporter K07225 hmuS; putative hemin transport protein
D UGYR_14655 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D UGYR_04930 colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D UGYR_00905 virulence factor MviM K03810 mviM; virulence factor
D UGYR_03380 GCN5 family acetyltransferase K02348 elaA; ElaA protein
D UGYR_06515 lipoprotein K05811 yfiM; putative lipoprotein
D UGYR_12730 periplasmic protein K04065 osmY; hyperosmotically inducible periplasmic protein
D UGYR_00870 hydrolase K04477 ycdX; putative hydrolase
D UGYR_06150 autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor
D UGYR_12285 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D UGYR_03065 oxidoreductase K06886 glbN; hemoglobin
D UGYR_01305 hypothetical protein K07001 K07001; NTE family protein
D UGYR_13425 iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D UGYR_02355 sufA; iron-sulfur cluster assembly scaffold protein K05997 sufA; Fe-S cluster assembly protein SufA
D UGYR_02350 cysteine desulfurase K09014 sufB; Fe-S cluster assembly protein SufB
D UGYR_02340 cysteine desulfurase K09015 sufD; Fe-S cluster assembly protein SufD
D UGYR_02630 hypothetical protein K07038 K07038; inner membrane protein
D UGYR_05980 hydrolase K07048 PTER; phosphotriesterase-related protein
D UGYR_10040 hypothetical protein K07058 K07058; membrane protein
D UGYR_10760 membrane protein K07058 K07058; membrane protein
D UGYR_11595 exclusion suppressor FxsA K07113 fxsA; UPF0716 protein FxsA
D UGYR_02330 cysteine desufuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
D UGYR_06790 Fe-S metabolism protein SufE K02426 sufE; cysteine desulfuration protein SufE
D UGYR_00190 sulfurtransferase K07146 K07146; UPF0176 protein
D UGYR_00420 lysogenization regulator K07153 hflD; high frequency lysogenization protein
D UGYR_11265 lysis protein K03745 slyX; SlyX protein
D UGYR_11500 hypothetical protein K03747 smg; Smg protein
D UGYR_12835 hypothetical protein K05805 creA; CreA protein
D UGYR_07220 protein SprT K02742 sprT; SprT protein
D UGYR_04935 cell division protein DedD K03749 dedD; DedD protein
D UGYR_11075 hypothetical protein K03112 damX; DamX protein
D UGYR_16055 vancomycin high temperature exclusion protein K03748 sanA; SanA protein
D UGYR_04950 hypothetical protein K03975 dedA; membrane-associated protein
D UGYR_04730 hypothetical protein K05594 elaB; ElaB protein
D UGYR_02065 hypothetical protein K08990 ycjF; putative membrane protein
D UGYR_09140 membrane protein K08993 yhhL; putative membrane protein
D UGYR_01300 hypothetical protein K09858 K09858; SEC-C motif domain protein
D UGYR_08460 maltose-binding protein K05775 malM; maltose operon periplasmic protein
D UGYR_08495 phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE
D UGYR_14290 hypothetical protein K14591 aroM; protein AroM
D UGYR_05160 hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D UGYR_06140 phospholipase A K06867 K06867; uncharacterized protein
D UGYR_06375 hypothetical protein K06889 K06889; uncharacterized protein
D UGYR_11840 esterase K06889 K06889; uncharacterized protein
D UGYR_15770 membrane protein K06890 K06890; uncharacterized protein
D UGYR_02875 baseplate assembly protein K06903 W; Bacteriophage baseplate protein W
D UGYR_08575 phage baseplate protein K06903 W; Bacteriophage baseplate protein W
D UGYR_02930 D protein K06905 D; Bacteriophage probable baseplate hub protein
D UGYR_02925 tail assembly protein K06906 gpU; phage tail protein
D UGYR_02900 tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D UGYR_08600 phage tail protein K06907 FI; Bacteriophage tail sheath protein
D UGYR_08605 hypothetical protein K06907 FI; Bacteriophage tail sheath protein
D UGYR_08610 phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D UGYR_02905 major tail tube protein K06908 FII; Bacteriophage tail tube protein
D UGYR_02070 hypothetical protein K06918 K06918; uncharacterized protein
D UGYR_00110 hypothetical protein K06929 K06929; uncharacterized protein
D UGYR_02220 oxidoreductase K06938 K06938; uncharacterized protein
D UGYR_01475 ferredoxin K06940 K06940; uncharacterized protein
D UGYR_04165 hypothetical protein K06940 K06940; uncharacterized protein
D UGYR_06235 hypothetical protein K06946 K06946; uncharacterized protein
D UGYR_07760 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein
D UGYR_02635 L-cystine transporter tcyP K06956 K06956; uncharacterized protein
D UGYR_00345 hypothetical protein K07000 K07000; uncharacterized protein
D UGYR_07630 esterase K07000 K07000; uncharacterized protein
D UGYR_11220 hydrolase K07019 K07019; uncharacterized protein
D UGYR_11255 hypothetical protein K07070 K07070; uncharacterized protein
D UGYR_04895 epimerase K07071 K07071; uncharacterized protein
D UGYR_05050 hypothetical protein K07090 K07090; uncharacterized protein
D UGYR_04880 phosphodiesterase K07095 K07095; uncharacterized protein
D UGYR_11895 hypothetical protein K07109 K07109; uncharacterized protein
D UGYR_07205 membrane protein K07112 K07112; uncharacterized protein
D UGYR_07210 YeeE/YedE K07112 K07112; uncharacterized protein
D UGYR_07955 penicillin-binding protein K07121 K07121; uncharacterized protein
D UGYR_00955 membrane protein K07136 K07136; uncharacterized protein
D UGYR_07990 hypothetical protein K07139 K07139; uncharacterized protein
D UGYR_00025 hypothetical protein K07140 K07140; MOSC domain-containing protein
D UGYR_16030 hypothetical protein K07148 K07148; uncharacterized protein
D UGYR_10350 membrane protein K08998 K08998; uncharacterized protein
D UGYR_07280 hypothetical protein K09131 K09131; uncharacterized protein
D UGYR_15140 hypothetical protein K09158 K09158; uncharacterized protein
D UGYR_01115 hypothetical protein K09160 K09160; uncharacterized protein
D UGYR_04835 hypothetical protein K09161 K09161; uncharacterized protein
D UGYR_07765 plasmid partition ParA protein K09701 K09701; uncharacterized protein
D UGYR_05415 hypothetical protein K09768 K09768; uncharacterized protein
D UGYR_01400 hypothetical protein K09780 K09780; uncharacterized protein
D UGYR_01185 hypothetical protein K09786 K09786; uncharacterized protein
D UGYR_14670 hypothetical protein K09790 K09790; uncharacterized protein
D UGYR_16535 hypothetical protein K09791 K09791; uncharacterized protein
D UGYR_09840 sugar deacetylase K09798 K09798; uncharacterized protein
D UGYR_06180 hypothetical protein K09801 K09801; uncharacterized protein
D UGYR_04060 hypothetical protein K09802 K09802; uncharacterized protein
D UGYR_07155 hypothetical protein K09807 K09807; uncharacterized protein
D UGYR_14195 hypothetical protein K05952 K05952; uncharacterized protein
D UGYR_12860 hypothetical protein K09861 K09861; uncharacterized protein
D UGYR_13220 DNA gyrase inhibitor K09862 K09862; uncharacterized protein
D UGYR_08715 hypothetical protein K09891 K09891; uncharacterized protein
D UGYR_10075 GTPase activator K09894 K09894; uncharacterized protein
D UGYR_07125 hypothetical protein K09895 K09895; uncharacterized protein
D UGYR_10100 hypothetical protein K09896 K09896; uncharacterized protein
D UGYR_09495 hypothetical protein K09897 K09897; uncharacterized protein
D UGYR_11215 hypothetical protein K09898 K09898; uncharacterized protein
D UGYR_04840 hypothetical protein K09899 K09899; uncharacterized protein
D UGYR_01375 dsDNA-mimic protein K09901 K09901; uncharacterized protein
D UGYR_01105 hypothetical protein K09902 K09902; uncharacterized protein
D UGYR_04265 hypothetical protein K09904 K09904; uncharacterized protein
D UGYR_00935 metal-binding protein K09907 K09907; uncharacterized protein
D UGYR_08035 cytochrome D ubiquinol oxidase subunit III K09908 K09908; uncharacterized protein
D UGYR_00105 hypothetical protein K09909 K09909; uncharacterized protein
D UGYR_13305 hypothetical protein K09910 K09910; uncharacterized protein
D UGYR_00065 Ter macrodomain organizer matS-binding protein K09911 K09911; uncharacterized protein
D UGYR_03305 hypothetical protein K09912 K09912; uncharacterized protein
D UGYR_00900 hypothetical protein K09915 K09915; uncharacterized protein
D UGYR_01220 transcriptional regulator K09916 K09916; uncharacterized protein
D UGYR_03010 hypothetical protein K09917 K09917; uncharacterized protein
D UGYR_02995 hypothetical protein K09918 K09918; uncharacterized protein
D UGYR_07640 dehydrogenase K09920 K09920; uncharacterized protein
D UGYR_09285 hypothetical protein K09921 K09921; uncharacterized protein
D UGYR_07305 hypothetical protein K09923 K09923; uncharacterized protein
D UGYR_11775 membrane protein K09937 K09937; uncharacterized protein
D UGYR_05690 hypothetical protein K09946 K09946; uncharacterized protein
D UGYR_05295 cytoplasmic protein K09954 K09954; uncharacterized protein
D UGYR_05285 nitrate reductase K09962 K09962; uncharacterized protein
D UGYR_14810 conjugal transfer protein TraB K09973 K09973; uncharacterized protein
D UGYR_00615 HutD family protein K09975 K09975; uncharacterized protein
D UGYR_01970 hypothetical protein K09978 K09978; uncharacterized protein
D UGYR_12155 hypothetical protein K09979 K09979; uncharacterized protein
D UGYR_01395 hypothetical protein K09981 K09981; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 28, 2025