+D GENES KO #

  KEGG Orthology (KO) - Yersinia ruckeri YRB

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:yru00010] D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D BD65_1595 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_1330 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_1848 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D BD65_1290 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BD65_1853 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BD65_227 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BD65_1291 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BD65_3054 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_2489 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_1908 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BD65_190 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_451 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_464 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D BD65_2580 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BD65_2581 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_391 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_3057 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BD65_1948 yihX; phosphatase yihX K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_226 aldose 1-epimerase family protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D BD65_2145 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BD65_2173 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_94 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_610 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_948 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D BD65_65 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:yru00020] D BD65_3026 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BD65_298 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_2584 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_90 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D BD65_3031 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D BD65_3032 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_3034 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BD65_3033 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BD65_3029 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_3030 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_3027 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BD65_3028 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_2706 fumA; fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D BD65_331 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_1129 mqo; malate dehydrogenase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D BD65_2145 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BD65_2580 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BD65_2581 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BD65_391 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:yru00030] D BD65_1595 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BD65_192 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BD65_3068 lactonase, 7-bladed beta-propeller family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D BD65_3167 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D BD65_2161 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BD65_1293 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D BD65_2496 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D BD65_1285 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BD65_2475 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D BD65_3190 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D BD65_1968 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D BD65_2477 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_2376 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D BD65_143 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BD65_193 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D BD65_2113 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12] D BD65_2091 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D BD65_1290 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_1848 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_1330 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:yru00040] D BD65_2443 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D BD65_2444 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D BD65_1467 glucuronate isomerase family protein K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D BD65_1466 mannitol dehydrogenase Rossmann domain protein K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D BD65_1465 hypothetical protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D BD65_778 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D BD65_779 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D BD65_247 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BD65_3165 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3166 nucleotidyl transferase family protein K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_2161 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BD65_1120 fggy; FGGY carbohydrate kinase domain-containing protein K00875 rbtK; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:yru00051] D BD65_2787 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BD65_329 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BD65_2941 nucleotidyl transferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_1330 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_1848 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D BD65_2043 mannitol dehydrogenase Rossmann domain protein K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D BD65_770 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D BD65_1290 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BD65_1853 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BD65_769 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BD65_562 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BD65_563 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D BD65_564 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D BD65_2042 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BD65_512 yniC; phosphatase YniC K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:yru00052] D BD65_3057 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BD65_3058 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D BD65_3059 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D BD65_3060 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BD65_3165 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3166 nucleotidyl transferase family protein K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D BD65_725 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_1330 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D BD65_2449 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D BD65_2436 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D BD65_2795 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D BD65_2441 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D BD65_2438 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D BD65_2439 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D BD65_2440 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D BD65_2442 nagA; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] D BD65_2437 putative tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:yru00053] D BD65_247 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BD65_858 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D BD65_859 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D BD65_860 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component C 00500 Starch and sucrose metabolism [PATH:yru00500] D BD65_2795 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D BD65_3165 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3166 nucleotidyl transferase family protein K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_2084 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D BD65_609 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D BD65_612 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D BD65_611 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D BD65_2173 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_94 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_610 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BD65_2119 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D BD65_2120 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D BD65_2117 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D BD65_2121 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D BD65_2127 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D BD65_2937 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D BD65_2118 glgX; glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D BD65_2128 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D BD65_948 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D BD65_1525 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D BD65_1524 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D BD65_1595 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BD65_2787 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:yru00520] D BD65_626 putative chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D BD65_70 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BD65_3001 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D BD65_948 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D BD65_2997 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D BD65_78 glucokinase family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D BD65_2995 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D BD65_2996 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D BD65_2787 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BD65_1992 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BD65_2349 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D BD65_1991 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BD65_1075 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D BD65_427 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D BD65_1502 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BD65_1666 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BD65_957 nanK; N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60] D BD65_958 N-acetylmannosamine-6-phosphate epimerase family protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D BD65_959 dihydrodipicolinate synthetase family protein K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D BD65_1776 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_2885 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_1775 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D BD65_2887 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D BD65_479 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D BD65_481 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D BD65_480 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D BD65_478 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D BD65_65 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_3165 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3166 nucleotidyl transferase family protein K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_247 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BD65_3058 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D BD65_3059 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D BD65_3060 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BD65_562 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BD65_563 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D BD65_564 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D BD65_1595 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BD65_329 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BD65_2941 nucleotidyl transferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D BD65_2119 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:yru00620] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_391 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D BD65_2580 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BD65_2581 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1332 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_3237 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_855 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BD65_856 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D BD65_190 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_451 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_1179 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BD65_1554 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BD65_1555 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BD65_875 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BD65_25 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D BD65_1128 lldD; L-lactate dehydrogenase cytochrome K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D BD65_386 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D BD65_3097 FAD binding domain protein K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D BD65_436 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D BD65_2749 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D BD65_3262 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D BD65_159 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BD65_3147 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D BD65_966 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_1129 mqo; malate dehydrogenase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D BD65_2706 fumA; fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D BD65_331 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_1827 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D BD65_2145 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BD65_464 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D BD65_1624 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D BD65_2540 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:yru00630] D BD65_1623 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_1624 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_3026 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BD65_298 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_2584 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_826 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D BD65_1680 catalase family protein K03781 katE; catalase [EC:1.11.1.6] D BD65_159 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BD65_2162 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_1056 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BD65_1275 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D BD65_1277 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1276 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D BD65_1715 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D BD65_193 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D BD65_2050 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BD65_2051 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BD65_2052 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D BD65_2053 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D BD65_243 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D BD65_127 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:yru00640] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_855 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BD65_1333 ackA; acetate kinase K00932 tdcD; propionate kinase [EC:2.7.2.15] D BD65_856 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1332 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_3237 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_1550 putative quinone oxidoreductase YhdH K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_1179 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BD65_1554 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BD65_1555 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BD65_875 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BD65_3033 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BD65_3034 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BD65_2584 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_20 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D BD65_1372 iron-containing alcohol dehydrogenase family protein K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] D BD65_2456 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] C 00650 Butanoate metabolism [PATH:yru00650] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D BD65_3029 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_3030 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_3027 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BD65_3028 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_622 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D BD65_1536 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BD65_1332 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_3237 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BD65_391 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D BD65_221 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2543 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2544 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BD65_1791 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D BD65_220 budA; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D BD65_651 short chain dehydrogenase family protein K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:yru00660] D BD65_221 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2543 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2544 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BD65_1791 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D BD65_220 budA; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D BD65_3033 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BD65_3034 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BD65_2538 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D BD65_2537 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D BD65_2539 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:yru00562] D BD65_1051 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BD65_1648 phosphatidylinositol-specific phospholipase C, X domain protein K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13] D BD65_1649 phosphatidylinositol-specific phospholipase C, X domain protein K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13] D BD65_1853 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:yru00190] D BD65_847 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D BD65_846 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D BD65_845 nuoD; NADH dehydrogenase (quinone), D subunit K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D BD65_844 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D BD65_843 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D BD65_842 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D BD65_841 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D BD65_840 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D BD65_839 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D BD65_838 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D BD65_837 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D BD65_836 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D BD65_835 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D BD65_72 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D BD65_3029 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_3030 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_3027 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BD65_3028 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_2822 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BD65_2823 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D BD65_2824 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D BD65_2825 cyoB; cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D BD65_2826 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D BD65_119 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BD65_3036 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BD65_118 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BD65_3037 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BD65_3038 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D BD65_1987 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BD65_1989 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BD65_1988 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BD65_1986 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BD65_1990 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BD65_1983 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BD65_1985 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BD65_1984 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BD65_2328 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D BD65_1002 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:yru00710] D BD65_1291 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BD65_227 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BD65_1290 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_1848 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D BD65_1293 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D BD65_1285 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BD65_2184 phosphoribulokinase / Uridine kinase family protein K00855 PRK; phosphoribulokinase [EC:2.7.1.19] D BD65_1853 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BD65_2161 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BD65_2496 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D BD65_1827 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D BD65_2145 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BD65_966 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:yru00720] D BD65_391 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D BD65_464 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D BD65_1827 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_2706 fumA; fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D BD65_331 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D BD65_3029 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_3030 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_3027 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BD65_3028 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_3034 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BD65_3033 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BD65_90 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D BD65_298 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_2584 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BD65_1179 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BD65_1554 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BD65_1555 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BD65_875 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BD65_323 formate--tetrahydrofolate ligase family protein K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D BD65_2919 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D BD65_1829 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D BD65_856 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D BD65_855 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:yru00680] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_3135 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D BD65_2050 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BD65_2051 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BD65_2052 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D BD65_2053 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D BD65_1056 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BD65_1827 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_1290 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_1848 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_1330 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D BD65_773 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D BD65_774 molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D BD65_855 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BD65_856 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_464 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D BD65_3054 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_2489 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_1908 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D BD65_1284 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BD65_3241 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BD65_2480 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:yru00910] D BD65_970 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D BD65_969 nitrate reductase cytochrome c-type subunit family protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D BD65_2167 nirB; nitrite reductase [NAD(P)H], large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D BD65_2166 nirD; nitrite reductase [NAD(P)H] small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D BD65_3214 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D BD65_2103 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_1489 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BD65_1490 gltD; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D BD65_29 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D BD65_1563 cynT; carbonic anhydrase 1 K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D BD65_2592 can; carbonic anhydrase 2 K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:yru00920] D BD65_953 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D BD65_1854 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D BD65_952 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D BD65_951 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D BD65_950 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D BD65_2631 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D BD65_2630 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BD65_2632 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D BD65_2321 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D BD65_2625 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D BD65_2623 sulfite reductase [NADPH] flavoprotein, alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D BD65_2624 cysI; sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D BD65_3107 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BD65_2125 glpE; thiosulfate sulfurtransferase glpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D BD65_1903 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BD65_2183 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_945 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_2842 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_1625 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D BD65_1835 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:yru00061] D BD65_1179 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BD65_1554 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BD65_1555 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BD65_875 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BD65_58 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D BD65_2683 hypothetical protein K02078 acpP; acyl carrier protein D BD65_56 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BD65_55 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BD65_890 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BD65_59 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BD65_57 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BD65_11 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D BD65_1184 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BD65_415 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BD65_200 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2542 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:yru00071] D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_2754 hypothetical protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D BD65_200 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2542 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_1234 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:yru00074] D BD65_1078 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D BD65_735 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7] D BD65_58 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D BD65_2683 hypothetical protein K02078 acpP; acyl carrier protein D BD65_56 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:yru00561] D BD65_1715 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D BD65_2457 dhaK; dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D BD65_2458 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D BD65_2459 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D BD65_2456 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D BD65_1847 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BD65_1584 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D BD65_54 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BD65_1399 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BD65_1377 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BD65_1583 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:yru00564] D BD65_1904 ketopantoate reductase PanE/ApbA family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D BD65_2122 FAD dependent oxidoreductase family protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D BD65_1734 glpA; glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D BD65_1733 glpB; glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D BD65_1732 glpC; glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D BD65_1584 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D BD65_1399 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BD65_1377 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BD65_1583 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D BD65_1741 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D BD65_1738 prolyl oligopeptidase family protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D BD65_1699 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D BD65_1736 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D BD65_1234 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D BD65_2094 CDP-diacylglycerol pyrophosphatase family protein K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D BD65_1189 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D BD65_1155 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D BD65_2282 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D BD65_647 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D BD65_2809 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D BD65_300 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D BD65_259 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:yru00565] D BD65_1741 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:yru00600] D BD65_725 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D BD65_2447 type I phosphodiesterase / nucleotide pyrophosphatase family protein K01130 atsA; arylsulfatase [EC:3.1.6.1] D BD65_3001 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism D BD65_1741 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D BD65_1741 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:yru00592] D BD65_1741 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:yru01040] D BD65_2899 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BD65_2848 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D BD65_274 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:yru00230] D BD65_1385 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D BD65_2150 nudE; ADP compounds hydrolase nudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D BD65_2477 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_143 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BD65_871 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BD65_1634 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D BD65_997 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BD65_555 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D BD65_1070 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D BD65_996 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D BD65_2902 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D BD65_2903 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D BD65_985 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D BD65_85 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BD65_1633 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BD65_2182 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BD65_2861 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BD65_2878 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BD65_2638 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BD65_2993 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D BD65_2148 HAD hydrolase, IA, variant 3 family protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D BD65_2875 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D BD65_2478 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D BD65_2785 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D BD65_2737 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D BD65_2591 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D BD65_1025 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BD65_1036 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BD65_2487 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D BD65_1315 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D BD65_2769 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D BD65_1024 guaA; GMP synthase glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BD65_2570 guaC; guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D BD65_1937 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D BD65_1140 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_815 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_816 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BD65_1141 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BD65_2386 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D BD65_2613 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D BD65_850 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D BD65_1939 spoT; bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BD65_1003 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D BD65_1782 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D BD65_2617 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D BD65_1756 adenylate cyclase, class-I family protein K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D BD65_3098 cyaB; adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D BD65_3018 cAMP phosphodiesterases class-II family protein K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] D BD65_2299 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BD65_327 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D BD65_345 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D BD65_1205 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D BD65_2319 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D BD65_3035 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D BD65_2872 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D BD65_2618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BD65_1383 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D BD65_2520 apaH; apaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D BD65_2632 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D BD65_2631 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D BD65_2630 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:yru00240] D BD65_2513 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BD65_2512 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BD65_1521 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BD65_1522 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D BD65_46 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D BD65_2 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D BD65_1926 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D BD65_305 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D BD65_1193 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D BD65_1036 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BD65_2618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BD65_1545 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D BD65_1460 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D BD65_2619 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D BD65_3243 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D BD65_236 nudG; CTP pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65] D BD65_3159 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D BD65_2878 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BD65_2638 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BD65_2993 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D BD65_356 noncanonical pyrimidine nucleotidase, YjjG family K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D BD65_1694 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D BD65_2785 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D BD65_995 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D BD65_2319 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D BD65_3035 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D BD65_1205 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D BD65_3150 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D BD65_2168 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D BD65_2386 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D BD65_3160 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D BD65_1140 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_815 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_816 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BD65_1141 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BD65_850 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D BD65_62 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D BD65_1924 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BD65_2476 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D BD65_249 thymidine kinase family protein K00857 tdk; thymidine kinase [EC:2.7.1.21] D BD65_1226 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D BD65_339 short chain dehydrogenase family protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:yru00250] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_1089 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D BD65_231 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BD65_3240 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BD65_1977 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D BD65_2992 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BD65_849 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D BD65_2261 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D BD65_1823 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BD65_1822 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BD65_2299 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BD65_85 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BD65_1521 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BD65_1522 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D BD65_622 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D BD65_1536 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BD65_1489 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BD65_1490 gltD; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D BD65_2103 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BD65_658 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_2513 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BD65_2512 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BD65_624 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1318 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1992 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BD65_871 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:yru00260] D BD65_1597 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D BD65_2492 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D BD65_1834 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D BD65_2115 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BD65_2493 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D BD65_2494 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D BD65_3212 ltaE; low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D BD65_1056 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BD65_159 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BD65_1715 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D BD65_3054 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_2489 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_1908 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D BD65_1284 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BD65_3241 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BD65_2480 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D BD65_339 short chain dehydrogenase family protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D BD65_1912 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D BD65_1911 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D BD65_1275 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D BD65_1277 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1276 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D BD65_1155 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D BD65_3185 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D BD65_3184 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D BD65_559 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BD65_3187 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BD65_1788 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BD65_1335 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BD65_281 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D BD65_282 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:yru00270] D BD65_1903 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BD65_2183 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_945 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_2842 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D BD65_3184 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D BD65_1369 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BD65_2098 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BD65_3185 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D BD65_1620 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BD65_1696 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D BD65_1297 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D BD65_2587 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D BD65_2588 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D BD65_91 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D BD65_2612 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D BD65_2737 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D BD65_521 yebR; protein yebR K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D BD65_2720 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BD65_1597 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D BD65_2492 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D BD65_1834 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D BD65_2115 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BD65_2493 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D BD65_1625 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D BD65_1835 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D BD65_1790 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BD65_2719 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BD65_1304 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_3107 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BD65_662 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D BD65_2332 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BD65_559 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BD65_3187 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BD65_949 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D BD65_1284 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BD65_3241 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:yru00280] D BD65_1790 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:yru00290] D BD65_1788 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BD65_1335 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BD65_2538 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D BD65_2537 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D BD65_2539 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D BD65_221 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2543 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2544 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BD65_1791 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D BD65_1785 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D BD65_1789 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BD65_1790 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BD65_2027 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D BD65_849 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D BD65_2540 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:yru00300] D BD65_1597 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D BD65_2492 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D BD65_1834 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D BD65_2115 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BD65_987 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BD65_2511 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D BD65_1198 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D BD65_2176 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BD65_979 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BD65_1753 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BD65_1236 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D BD65_2551 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BD65_2552 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:yru00310] D BD65_3032 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_654 cadA; lysine decarboxylase, inducible K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18] D BD65_1536 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BD65_3249 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D BD65_462 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] C 00220 Arginine biosynthesis [PATH:yru00220] D BD65_2387 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D BD65_1823 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BD65_1822 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BD65_618 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D BD65_624 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1318 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_2513 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BD65_2512 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BD65_2103 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_849 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D BD65_1218 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D BD65_1824 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D BD65_1825 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D BD65_2176 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BD65_1826 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:yru00330] D BD65_2168 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D BD65_3113 adiA; biodegradative arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D BD65_1296 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D BD65_1309 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D BD65_1308 aguB; N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D BD65_2371 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D BD65_2588 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D BD65_2587 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D BD65_631 NAD(P)-binding Rossmann-like domain protein K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6] D BD65_998 speG; spermidine N(1)-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D BD65_122 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D BD65_124 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D BD65_121 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D BD65_123 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D BD65_125 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D BD65_1312 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D BD65_658 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BD65_2772 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BD65_2773 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D BD65_545 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:yru00340] D BD65_3175 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D BD65_3168 hisE; phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D BD65_3170 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D BD65_3171 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D BD65_3169 hisF; imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D BD65_3172 hisB; histidine biosynthesis bifunctional protein hisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_3174 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D BD65_2064 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D BD65_2063 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D BD65_128 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D BD65_130 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D BD65_127 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:yru00350] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D BD65_352 beta-eliminating lyase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D BD65_1536 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:yru00360] D BD65_352 beta-eliminating lyase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D BD65_2109 acetyltransferase domain protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D BD65_214 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00380 Tryptophan metabolism [PATH:yru00380] D BD65_3032 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_352 beta-eliminating lyase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D BD65_826 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D BD65_1680 catalase family protein K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:yru00400] D BD65_466 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_3053 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_2731 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_2158 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D BD65_1553 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D BD65_2246 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D BD65_2157 aroK; shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71] D BD65_2780 aroL; shikimate kinase 2 K00891 aroK; shikimate kinase [EC:2.7.1.71] D BD65_3242 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D BD65_896 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D BD65_286 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BD65_285 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D BD65_284 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D BD65_283 indole-3-glycerol phosphate synthase family protein K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D BD65_281 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D BD65_282 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D BD65_2732 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D BD65_976 putative chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D BD65_2733 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:yru00410] D BD65_2596 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D BD65_622 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D BD65_631 NAD(P)-binding Rossmann-like domain protein K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6] D BD65_2597 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00430 Taurine and hypotaurine metabolism [PATH:yru00430] D BD65_622 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D BD65_856 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D BD65_855 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:yru00440] D BD65_2381 bacterial phosphonate metabolism family protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D BD65_2383 phnG; phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D BD65_2382 phnH; phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D BD65_2378 phnL; phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D BD65_2377 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D BD65_2380 phnJ; protein phnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D BD65_2374 phnP; phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:yru00450] D BD65_1835 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D BD65_1369 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BD65_2098 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BD65_1620 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BD65_1696 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D BD65_3184 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D BD65_455 sufS; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D BD65_3228 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D BD65_2631 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D BD65_2630 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BD65_234 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D BD65_2055 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D BD65_3157 metG; methionine--tRNA ligase, beta subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:yru00460] D BD65_231 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BD65_3240 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BD65_1977 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D BD65_1056 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:yru00470] D BD65_215 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_1576 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_600 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_2558 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_624 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1318 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1805 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BD65_2554 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BD65_396 hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D BD65_662 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D BD65_1753 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BD65_1236 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D BD65_214 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:yru00480] D BD65_3022 lamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D BD65_3020 allophanate hydrolase subunit 1 family protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D BD65_3021 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D BD65_2719 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BD65_1304 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D BD65_2392 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BD65_1041 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D BD65_1 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BD65_2768 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D BD65_1569 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_423 gstB; glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_3180 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_2099 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D BD65_90 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D BD65_3167 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D BD65_192 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BD65_1812 hybrid peroxiredoxin hyPrx5 K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D BD65_2371 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D BD65_2588 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:yru00511] D BD65_725 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D BD65_3001 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D BD65_2947 glycosyl hydrolases 2 family protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:yru00540] D BD65_1183 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D BD65_2562 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D BD65_1185 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D BD65_2904 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D BD65_1182 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D BD65_3248 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D BD65_1510 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D BD65_151 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D BD65_1511 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D BD65_3253 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D BD65_1916 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D BD65_39 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D BD65_189 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D BD65_889 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D BD65_782 yeiU; inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D BD65_433 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D BD65_2069 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D BD65_583 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D BD65_477 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D BD65_1562 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D BD65_2755 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D BD65_1392 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D BD65_1161 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D BD65_1913 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D BD65_1915 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D BD65_1914 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D BD65_2452 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:yru00542] D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:yru00541] D BD65_3165 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3166 nucleotidyl transferase family protein K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BD65_3060 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BD65_247 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BD65_1773 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BD65_1774 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BD65_2886 rmlD substrate binding domain protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BD65_1771 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D BD65_1772 wecD; TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210] D BD65_329 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BD65_1991 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BD65_1776 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_2885 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_1775 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D BD65_2887 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:yru00550] D BD65_1502 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BD65_1666 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BD65_2557 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BD65_2554 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BD65_2551 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BD65_600 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_2558 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_2552 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BD65_1190 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BD65_1397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_3191 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_2553 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BD65_2556 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BD65_1485 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BD65_2151 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BD65_2606 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D BD65_1038 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BD65_2966 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D BD65_579 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_2550 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_3186 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_2963 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_2343 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:yru00552] D BD65_1397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_3191 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00543 Exopolysaccharide biosynthesis [PATH:yru00543] D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D BD65_1767 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D BD65_1769 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D BD65_1903 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:yru00730] D BD65_1642 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D BD65_1022 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D BD65_1644 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D BD65_1048 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BD65_2813 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D BD65_1647 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D BD65_2810 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D BD65_1646 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D BD65_1643 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D BD65_2808 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D BD65_2283 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D BD65_69 thiK; thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89] D BD65_2872 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:yru00740] D BD65_299 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BD65_2805 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BD65_1750 HAD hydrolase, IA, variant 1 family protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D BD65_1390 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D BD65_2806 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D BD65_446 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D BD65_2506 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D BD65_1678 fre; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D BD65_1385 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D BD65_88 nudJ; phosphatase nudJ K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D BD65_870 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:yru00750] D BD65_426 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D BD65_424 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D BD65_1292 epd; erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D BD65_879 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D BD65_3241 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BD65_2523 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D BD65_1079 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D BD65_2494 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:yru00760] D BD65_1089 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D BD65_3049 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D BD65_2574 nadC; nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D BD65_2478 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D BD65_2482 nadR; trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D BD65_2878 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BD65_2638 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BD65_2993 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D BD65_2969 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D BD65_2618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BD65_1640 NADH pyrophosphatase-like rudimentary NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D BD65_1065 nadE; NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D BD65_2708 ygaD; protein YgaD K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D BD65_230 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D BD65_79 sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D BD65_1097 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D BD65_1811 pyridine nucleotide-disulfide oxidoreductase family protein K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D BD65_364 pntA; NAD(P)(+) transhydrogenase (AB-specific), alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D BD65_363 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D BD65_1536 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:yru00770] D BD65_221 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2543 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BD65_2544 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BD65_1791 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D BD65_1785 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D BD65_1789 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BD65_2598 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D BD65_2819 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D BD65_2597 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D BD65_1664 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D BD65_1923 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D BD65_2618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BD65_1918 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D BD65_2569 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D BD65_1078 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D BD65_2798 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D BD65_1790 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BD65_2596 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:yru00780] D BD65_3072 bioC; malonyl-acyl carrier protein O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D BD65_890 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BD65_59 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BD65_57 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BD65_1184 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BD65_415 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BD65_2131 bioH; pimelyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D BD65_3071 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D BD65_3069 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D BD65_334 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D BD65_3073 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D BD65_3070 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D BD65_1665 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:yru00785] D BD65_2961 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D BD65_2960 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D BD65_473 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2580 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BD65_2581 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BD65_3031 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D BD65_3032 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BD65_1275 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D BD65_1277 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BD65_1276 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:yru00790] D BD65_3139 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D BD65_179 nudB; dihydroneopterin triphosphate pyrophosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D BD65_1398 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D BD65_2599 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D BD65_2348 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D BD65_2518 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BD65_874 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D BD65_299 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BD65_2175 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D BD65_557 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D BD65_60 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D BD65_2622 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D BD65_2621 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D BD65_2839 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D BD65_1204 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D BD65_3083 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D BD65_3084 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D BD65_3086 moaE; molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D BD65_2497 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D BD65_3133 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D BD65_1960 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:yru00670] D BD65_2518 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BD65_323 formate--tetrahydrofolate ligase family protein K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D BD65_2919 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D BD65_1056 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BD65_997 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BD65_1633 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BD65_2240 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BD65_1277 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BD65_1620 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BD65_1226 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D BD65_243 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D BD65_1829 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D BD65_1283 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:yru00860] D BD65_936 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BD65_146 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D BD65_2607 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D BD65_1682 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D BD65_1757 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D BD65_1758 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D BD65_1639 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D BD65_964 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D BD65_1953 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D BD65_1672 flavodoxin domain protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D BD65_2873 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D BD65_1759 hemX family protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D BD65_2164 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D BD65_2629 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D BD65_2822 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BD65_290 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D BD65_2206 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:yru00130] D BD65_1586 chorismate lyase family protein K03181 ubiC; chorismate lyase [EC:4.1.3.40] D BD65_1585 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D BD65_1679 decarboxylase, UbiD family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D BD65_870 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D BD65_1278 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D BD65_814 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D BD65_1279 ubiH; 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D BD65_1689 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D BD65_2984 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D BD65_832 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D BD65_1341 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2] D BD65_831 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D BD65_830 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D BD65_828 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D BD65_827 menE; O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D BD65_829 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D BD65_461 ydiI; esterase YdiI K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D BD65_1843 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:yru00900] D BD65_2810 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D BD65_1191 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D BD65_2635 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D BD65_144 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D BD65_2636 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D BD65_1032 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D BD65_2510 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D BD65_870 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D BD65_2811 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D BD65_2336 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D BD65_1190 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:yru00907] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D BD65_1293 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:yru00523] D BD65_1773 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BD65_1774 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BD65_2886 rmlD substrate binding domain protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:yru01053] D BD65_832 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D BD65_1341 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2] D BD65_1339 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D BD65_1338 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28] D BD65_735 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7] D BD65_1340 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] C 01055 Biosynthesis of vancomycin group antibiotics D BD65_1774 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:yru00332] D BD65_2772 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BD65_2773 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:yru00261] D BD65_1349 mbtH-like family protein K05375 mbtH; MbtH protein D BD65_2631 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D BD65_2630 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BD65_1597 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D BD65_2492 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D BD65_1834 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D BD65_2115 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BD65_987 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BD65_2511 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:yru00521] D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D BD65_3008 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BD65_1051 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BD65_1773 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BD65_1774 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BD65_2886 rmlD substrate binding domain protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D BD65_925 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:yru00525] D BD65_1773 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BD65_1774 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:yru00401] D BD65_2732 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D BD65_286 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BD65_285 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D BD65_56 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BD65_57 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BD65_415 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D BD65_58 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D BD65_2683 hypothetical protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:yru00999] D BD65_1297 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D BD65_2246 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:yru00362] D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_2092 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D BD65_1043 fdx; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] C 00627 Aminobenzoate degradation [PATH:yru00627] D BD65_25 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D BD65_870 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:yru00364] D BD65_1695 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:yru00625] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:yru00361] D BD65_1695 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:yru00623] D BD65_1695 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D BD65_2092 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:yru00633] D BD65_435 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D BD65_1677 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D BD65_901 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:yru00930] D BD65_1676 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D BD65_900 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D BD65_2092 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:yru00626] D BD65_3136 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BD65_250 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:yru03020] D BD65_1651 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BD65_1650 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BD65_2233 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BD65_1938 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:yru03010] D BD65_3244 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BD65_1195 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BD65_2214 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BD65_2232 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BD65_2225 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BD65_2313 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BD65_2202 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BD65_2222 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BD65_1496 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BD65_2207 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BD65_2231 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BD65_2201 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BD65_2230 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BD65_2221 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D BD65_2358 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BD65_2724 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BD65_2217 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BD65_2314 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BD65_2212 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BD65_2505 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BD65_1401 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BD65_1654 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BD65_2211 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BD65_2208 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BD65_2209 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BD65_2220 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BD65_2223 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BD65_1652 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BD65_2315 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BD65_1653 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BD65_1655 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BD65_1497 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BD65_2218 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BD65_2227 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BD65_2215 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BD65_2234 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BD65_2224 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BD65_2727 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BD65_493 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BD65_2337 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BD65_2213 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BD65_2210 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BD65_2219 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BD65_793 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D BD65_2338 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BD65_1921 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BD65_2216 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BD65_2226 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BD65_1837 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BD65_2852 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BD65_53 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D BD65_1920 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BD65_2016 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D BD65_494 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BD65_2229 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D BD65_1632 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1804 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2739 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1671 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1802 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1158 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2250 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1963 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1668 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2742 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1626 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2251 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2743 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1801 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1628 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1962 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1667 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1157 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:yru00970] D BD65_937 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_938 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1630 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1669 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_2741 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1765 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2714 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2716 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_915 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_732 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_733 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_752 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_2753 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_1800 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_2744 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_645 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BD65_2988 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_2985 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_2989 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_1159 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1803 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_2249 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1964 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1660 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2287 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_646 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2286 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_1261 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_1764 tRNA-His K14226 tRNA-His; tRNA His D BD65_1631 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_1670 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_2740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_1762 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2463 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2465 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2464 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2990 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_644 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2351 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2395 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_652 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_3047 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_931 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_3048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_2986 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_2991 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1404 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1214 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1216 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_2352 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1215 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1324 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BD65_2256 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BD65_797 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_1761 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_2073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_2713 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_155 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_157 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_27 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_806 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_1627 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1659 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1662 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_805 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1799 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BD65_1661 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_241 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_242 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_932 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_933 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_935 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_448 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_450 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_449 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_936 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BD65_2998 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D BD65_2711 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BD65_178 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BD65_3266 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BD65_2034 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BD65_2035 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BD65_496 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BD65_3233 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BD65_2055 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D BD65_2906 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BD65_3157 metG; methionine--tRNA ligase, beta subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BD65_2240 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BD65_2390 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BD65_2972 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BD65_2507 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BD65_1262 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BD65_171 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BD65_1167 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BD65_1031 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BD65_492 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BD65_491 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BD65_425 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BD65_2163 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:yru03060] D BD65_2228 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D BD65_1657 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D BD65_2350 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D BD65_2802 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BD65_2803 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D BD65_2801 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D BD65_2013 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D BD65_2565 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BD65_1905 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BD65_2564 secretion monitor family protein K13301 secM; secretion monitor D BD65_2723 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BD65_1722 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BD65_1686 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D BD65_1685 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BD65_1684 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D BD65_2959 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE D BD65_1083 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BD65_2508 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:yru04122] D BD65_1048 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BD65_3107 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BD65_1729 tusA; sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D BD65_2200 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D BD65_2199 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C D BD65_2198 tusD; sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D BD65_26 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D BD65_87 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BD65_3086 moaE; molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D BD65_3083 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D BD65_3085 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D BD65_3132 moeB; molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D BD65_3084 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D BD65_2497 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D BD65_2813 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D BD65_1645 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D BD65_1644 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:yru03018] D BD65_1229 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D BD65_49 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D BD65_1781 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BD65_2359 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D BD65_3093 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D BD65_2301 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BD65_2361 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BD65_1740 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BD65_1779 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_2501 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D BD65_2264 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BD65_2294 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D BD65_1002 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D BD65_2600 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:yru03030] D BD65_544 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D BD65_2752 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BD65_1180 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BD65_2867 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BD65_63 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BD65_2970 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BD65_2467 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D BD65_2391 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BD65_2018 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BD65_1577 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BD65_1402 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_2751 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BD65_1181 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:yru03410] D BD65_311 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BD65_1095 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D BD65_1321 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D BD65_1919 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BD65_2032 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BD65_238 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BD65_768 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_1264 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:yru03420] D BD65_74 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BD65_1572 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BD65_3075 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BD65_648 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BD65_1749 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:yru03430] D BD65_2642 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BD65_2292 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D BD65_1230 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D BD65_1749 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BD65_756 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D BD65_1026 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BD65_2812 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BD65_548 exoX; exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D BD65_1264 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_1180 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BD65_2018 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BD65_2867 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BD65_2970 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BD65_63 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BD65_2752 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BD65_544 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D BD65_2391 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BD65_2467 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_2160 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:yru03440] D BD65_1264 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_2019 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D BD65_1080 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BD65_2869 recR; recombination protein RecR K06187 recR; recombination protein RecR D BD65_2709 recA; protein RecA K03553 recA; recombination protein RecA D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_182 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BD65_183 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BD65_181 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D BD65_1941 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BD65_1220 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D BD65_1222 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D BD65_1219 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BD65_1180 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BD65_2018 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BD65_2867 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BD65_2970 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BD65_63 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BD65_2752 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BD65_544 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D BD65_2391 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BD65_2467 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D BD65_1838 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D BD65_2859 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:yru03250] D BD65_2174 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:yru02010] D BD65_953 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D BD65_1854 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D BD65_952 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D BD65_951 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D BD65_950 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D BD65_3064 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D BD65_3065 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D BD65_3066 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D BD65_634 yfuA; yfuA K02012 afuA; iron(III) transport system substrate-binding protein D BD65_748 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D BD65_635 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D BD65_749 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D BD65_636 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BD65_750 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BD65_2533 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D BD65_2532 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D BD65_2530 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D BD65_3197 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D BD65_3200 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D BD65_3199 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D BD65_3198 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D BD65_1144 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D BD65_1143 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D BD65_1142 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BD65_3108 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D BD65_3109 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein D BD65_3111 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D BD65_3110 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D BD65_1591 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D BD65_1592 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein D BD65_1593 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein D BD65_1589 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BD65_1505 putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein D BD65_1258 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BD65_1506 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BD65_1260 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BD65_1507 putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BD65_1504 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D BD65_1259 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BD65_1508 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BD65_1969 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D BD65_1970 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D BD65_1971 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BD65_1972 rbsD / FucU transport family protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D BD65_3143 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D BD65_3145 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein D BD65_3144 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D BD65_1703 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BD65_1702 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BD65_1701 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BD65_1700 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BD65_1996 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_2792 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_1997 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D BD65_1001 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein D BD65_1998 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BD65_1000 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BD65_1999 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BD65_999 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BD65_3103 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D BD65_3104 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BD65_3105 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BD65_3102 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D BD65_867 hisM; histidine transport system permease protein hisM K10015 hisM; histidine transport system permease protein D BD65_868 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D BD65_866 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D BD65_869 argT; lysine-arginine-ornithine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D BD65_3123 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D BD65_3122 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D BD65_3121 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D BD65_3203 artJ; ABC transporter arginine-binding protein 1 K09996 artJ; arginine transport system substrate-binding protein D BD65_3206 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein D BD65_3204 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein D BD65_3205 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein D BD65_3207 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D BD65_2977 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D BD65_2975 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D BD65_2976 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D BD65_2974 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D BD65_661 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D BD65_660 yecS; inner membrane amino-acid ABC transporter permease protein yecS K10009 tcyB; L-cystine transport system permease protein D BD65_659 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D BD65_1714 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BD65_1713 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D BD65_1712 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D BD65_1711 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BD65_1710 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D BD65_1164 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein D BD65_1163 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein D BD65_1162 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BD65_3074 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D BD65_252 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_253 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_394 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_254 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D BD65_255 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D BD65_256 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D BD65_257 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D BD65_2074 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D BD65_2075 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D BD65_2076 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D BD65_2077 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D BD65_2078 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D BD65_410 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D BD65_411 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D BD65_412 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D BD65_413 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D BD65_414 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D BD65_785 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D BD65_786 yejB; inner membrane ABC transporter permease protein yejB K13894 yejB; microcin C transport system permease protein D BD65_787 yejE; inner membrane ABC transporter permease protein yejE K13895 yejE; microcin C transport system permease protein D BD65_788 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D BD65_1342 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D BD65_1344 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein D BD65_1345 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein D BD65_1346 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D BD65_2611 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein D BD65_483 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein D BD65_482 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D BD65_187 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D BD65_185 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D BD65_186 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D BD65_505 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D BD65_507 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein D BD65_508 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D BD65_506 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D BD65_75 lolC; lipo-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein D BD65_77 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D BD65_76 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BD65_910 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D BD65_911 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D BD65_912 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D BD65_913 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D BD65_2393 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D BD65_2394 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D BD65_1514 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D BD65_1720 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D BD65_1721 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BD65_3247 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D BD65_2844 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D BD65_2845 mdlB; multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D BD65_1819 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_103 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_3226 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BD65_3227 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BD65_3220 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:yru02060] D BD65_947 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BD65_946 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D BD65_948 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D BD65_65 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D BD65_2997 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D BD65_1525 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D BD65_2042 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BD65_609 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D BD65_612 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D BD65_611 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D BD65_562 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BD65_563 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D BD65_564 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D BD65_2441 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D BD65_2438 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D BD65_2439 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D BD65_2440 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D BD65_858 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D BD65_859 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D BD65_860 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component D BD65_771 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D BD65_769 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BD65_770 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D BD65_1228 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D BD65_1519 ptsO; phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr D BD65_1517 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:yru03070] D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_2663 hypothetical protein K03221 yscF; type III secretion protein F D BD65_2668 invA; invasion protein invA K03230 yscV; type III secretion protein V D BD65_2673 surface presentation of antigens family protein K03225 yscQ; type III secretion protein Q D BD65_1252 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D BD65_2699 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D BD65_2688 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S D BD65_2700 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D BD65_1250 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F D BD65_2697 gspF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D BD65_1249 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D BD65_2696 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D BD65_2695 gspH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D BD65_1248 hypothetical protein K02457 gspH; general secretion pathway protein H D BD65_1247 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D BD65_2694 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D BD65_1246 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D BD65_2693 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D BD65_1245 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D BD65_2692 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D BD65_1244 type II secretion system (T2SS), L family protein K02461 gspL; general secretion pathway protein L D BD65_2691 gspL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D BD65_2690 type II secretion system (T2SS), M family protein K02462 gspM; general secretion pathway protein M D BD65_1251 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D BD65_2698 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D BD65_2689 outO; type 4 prepilin-like proteins leader peptide-processing enzyme K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D BD65_2802 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BD65_2803 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D BD65_1657 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D BD65_2350 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D BD65_2228 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D BD65_2801 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D BD65_2013 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D BD65_2565 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BD65_2564 secretion monitor family protein K13301 secM; secretion monitor D BD65_1722 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BD65_1905 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BD65_2723 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BD65_1686 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D BD65_1685 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BD65_1684 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D BD65_2959 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE D BD65_1598 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_168 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_1599 shlA; hemolysin K11016 shlA; hemolysin D BD65_169 hypothetical protein K11016 shlA; hemolysin D BD65_1609 phage-related baseplate assembly family protein K11904 vgrG; type VI secretion system secreted protein VgrG B B 09132 Signal transduction C 02020 Two-component system [PATH:yru02020] D BD65_2791 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BD65_2790 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D BD65_1996 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_2792 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_82 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D BD65_83 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D BD65_2144 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BD65_2143 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BD65_807 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D BD65_3265 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D BD65_1901 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D BD65_1900 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D BD65_1472 hypothetical protein K25864 mzrA; modulator protein MzrA D BD65_371 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D BD65_370 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D BD65_2614 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D BD65_1015 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D BD65_1016 hypothetical protein K07664 baeR; two-component system, OmpR family, response regulator BaeR D BD65_1011 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D BD65_1012 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump D BD65_1013 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump D BD65_1014 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D BD65_975 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump D BD65_2341 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D BD65_2342 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D BD65_481 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D BD65_719 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D BD65_718 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D BD65_665 flaA; flagellin K02406 fliC; flagellin D BD65_666 flaA; flagellin K02406 fliC; flagellin D BD65_667 flaA; flagellin K02406 fliC; flagellin D BD65_664 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D BD65_717 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BD65_3011 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D BD65_3010 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D BD65_3014 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D BD65_3013 kdpB; K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D BD65_3012 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D BD65_773 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D BD65_1487 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D BD65_2491 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D BD65_2866 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BD65_2865 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D BD65_2862 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D BD65_2863 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D BD65_2864 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D BD65_2017 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D BD65_2057 D-ala-D-ala dipeptidase family protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BD65_743 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D BD65_744 dpiA; transcriptional regulatory protein DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB D BD65_742 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D BD65_741 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D BD65_740 citE; citrate (pro-3S)-lyase, beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D BD65_739 citF; citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D BD65_738 citX; holo-ACP synthase CitX K05964 citX; holo-ACP synthase [EC:2.7.7.61] D BD65_737 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D BD65_736 citT; citrate carrier K09477 citT; citrate:succinate antiporter D BD65_99 dcuS; sensor protein dcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D BD65_98 dcuR; transcriptional regulatory protein dcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR D BD65_2729 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D BD65_3147 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D BD65_97 2-hydroxycarboxylate transporter family protein K11616 maeN; malate:Na+ symporter D BD65_116 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D BD65_973 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D BD65_2279 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BD65_2278 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BD65_2277 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D BD65_2276 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D BD65_747 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D BD65_2072 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D BD65_2071 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D BD65_2070 uhpA; transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D BD65_746 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D BD65_745 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D BD65_1165 putative protein rcsF K06080 rcsF; RcsF protein D BD65_812 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D BD65_810 his Kinase A domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D BD65_811 rcsB; rcsB protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D BD65_2615 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D BD65_649 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D BD65_2712 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D BD65_3050 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D BD65_2654 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D BD65_3052 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D BD65_2037 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2040 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2041 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2271 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_2039 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_269 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2008 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2038 outer membrane usher family protein K07347 fimD; outer membrane usher protein D BD65_1009 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_1356 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D BD65_1357 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D BD65_1359 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D BD65_1360 ATP synthase alpha/beta family, nucleotide-binding domain protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D BD65_1361 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D BD65_1362 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D BD65_1197 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D BD65_1064 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D BD65_1951 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BD65_1952 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_2816 pgtC; phosphoglycerate transport regulatory protein pgtC K08478 pgtC; phosphoglycerate transport regulatory protein PgtC D BD65_2815 pgtB; phosphoglycerate transport system sensor protein pgtB K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BD65_2814 pgtA; transport activator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D BD65_2817 phosphoglycerate transporter family protein K11382 pgtP; MFS transporter, OPA family, phosphoglycerate transporter protein D BD65_2089 dctA; aerobic C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D BD65_1515 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BD65_1068 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D BD65_1066 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D BD65_711 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BD65_2005 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_3004 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_713 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_640 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_2047 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D BD65_722 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D BD65_712 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D BD65_714 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D BD65_715 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BD65_709 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BD65_710 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BD65_2974 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D BD65_2975 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D BD65_2976 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D BD65_2977 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D BD65_2178 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BD65_1932 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase D BD65_624 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_1318 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D BD65_119 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BD65_3036 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BD65_118 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BD65_3037 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BD65_3038 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_1776 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_2885 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BD65_1775 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D BD65_701 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D BD65_2371 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:yru02024] D BD65_2720 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BD65_2294 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D BD65_286 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BD65_285 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D BD65_466 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_3053 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_2731 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BD65_1068 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D BD65_1066 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D BD65_719 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D BD65_718 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D BD65_3010 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D BD65_746 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D BD65_745 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D BD65_622 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D BD65_623 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D BD65_534 hypothetical protein K20268 rhiA; rhizosphere induced protein D BD65_1714 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BD65_1713 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D BD65_1712 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D BD65_1711 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BD65_1710 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D BD65_91 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D BD65_92 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D BD65_1932 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase D BD65_1931 diguanylate cyclase domain protein K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52] D BD65_200 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2542 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2178 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BD65_1581 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BD65_299 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BD65_2805 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BD65_252 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_253 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_394 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_254 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D BD65_255 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D BD65_256 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D BD65_257 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D BD65_2013 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D BD65_1657 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D BD65_2350 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D BD65_2228 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D BD65_2801 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D BD65_2565 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BD65_1722 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BD65_1905 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BD65_2723 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:yru02030] D BD65_2005 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_3004 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_713 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_640 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_2047 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D BD65_722 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D BD65_712 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D BD65_1591 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D BD65_1969 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D BD65_3143 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D BD65_2074 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D BD65_715 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BD65_714 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D BD65_709 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BD65_708 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D BD65_710 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BD65_711 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BD65_677 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BD65_683 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BD65_684 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BD65_717 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BD65_716 motB; motility protein B K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:yru02040] D BD65_675 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BD65_676 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BD65_677 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BD65_678 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D BD65_679 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BD65_680 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BD65_681 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D BD65_682 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D BD65_683 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BD65_684 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BD65_685 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D BD65_686 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BD65_687 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BD65_688 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BD65_703 flhE; flagellar protein flhE K03516 flhE; flagellar protein FlhE D BD65_704 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BD65_705 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BD65_700 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D BD65_699 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BD65_698 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BD65_697 flgD; basal-body rod modification protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD D BD65_696 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D BD65_695 flgF; flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF D BD65_694 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D BD65_693 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D BD65_692 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D BD65_691 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D BD65_690 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BD65_689 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D BD65_665 flaA; flagellin K02406 fliC; flagellin D BD65_666 flaA; flagellin K02406 fliC; flagellin D BD65_667 flaA; flagellin K02406 fliC; flagellin D BD65_668 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D BD65_669 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D BD65_670 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT D BD65_717 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BD65_716 motB; motility protein B K02557 motB; chemotaxis protein MotB D BD65_701 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D BD65_702 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D BD65_661 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D BD65_663 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ D BD65_1403 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BD65_719 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D BD65_718 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D BD65_1515 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BD65_664 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D BD65_1620 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection [PATH:yru05135] D BD65_2577 lysM domain protein K13735 yeeJ; adhesin/invasin D BD65_343 yopJ Serine/Threonine acetyltransferase family protein K08598 yopJ; YopJ protease family C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells [PATH:yru05100] D BD65_2577 lysM domain protein K13735 yeeJ; adhesin/invasin D BD65_2681 invasion plasmid antigen IpaD family protein K13287 sipD; invasin D D BD65_2679 secretion system effector C (SseC) like family protein K13285 sipB; invasin B B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:yru01501] D BD65_3265 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D BD65_807 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D BD65_2828 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D BD65_70 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BD65_252 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_253 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_394 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_254 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D BD65_255 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D BD65_256 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D BD65_257 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D BD65_2854 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D BD65_2853 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_2151 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BD65_2966 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D BD65_579 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_2550 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:yru01502] D BD65_2057 D-ala-D-ala dipeptidase family protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BD65_600 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_2558 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_215 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_1576 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_2552 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BD65_2553 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BD65_2556 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:yru01503] D BD65_82 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D BD65_83 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D BD65_2069 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D BD65_583 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D BD65_481 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D BD65_480 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D BD65_479 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D BD65_478 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D BD65_477 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D BD65_476 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D BD65_475 eamA-like transporter family protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D BD65_2341 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D BD65_2342 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D BD65_433 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D BD65_410 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D BD65_411 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D BD65_412 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D BD65_413 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D BD65_414 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D BD65_101 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D BD65_1168 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein) D BD65_1901 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D BD65_1900 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D BD65_2291 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_1217 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_453 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D BD65_2614 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D BD65_1957 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D BD65_2174 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D BD65_2854 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D BD65_2853 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_1183 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:yru01000] C 01001 Protein kinases [BR:yru01001] D BD65_595 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D BD65_2942 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D BD65_2791 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BD65_82 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D BD65_2144 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BD65_371 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D BD65_1901 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D BD65_1015 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D BD65_2341 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D BD65_3011 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D BD65_1487 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D BD65_2866 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BD65_116 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D BD65_2071 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D BD65_746 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D BD65_810 his Kinase A domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D BD65_812 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D BD65_2615 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D BD65_3050 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D BD65_743 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D BD65_99 dcuS; sensor protein dcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D BD65_2116 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D BD65_922 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D BD65_1951 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BD65_1068 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D BD65_2815 pgtB; phosphoglycerate transport system sensor protein pgtB K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BD65_715 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:yru01009] D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D BD65_2480 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:yru01002] D BD65_2508 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D BD65_2689 outO; type 4 prepilin-like proteins leader peptide-processing enzyme K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D BD65_1355 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BD65_376 ompT; protease 7 K01355 ompT; omptin [EC:3.4.23.49] D BD65_3025 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D BD65_1024 guaA; GMP synthase glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BD65_783 spr; lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D BD65_439 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D BD65_474 nlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC D BD65_871 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BD65_1489 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BD65_1992 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BD65_2992 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BD65_343 yopJ Serine/Threonine acetyltransferase family protein K08598 yopJ; YopJ protease family D BD65_2818 yajL; chaperone protein YajL K03152 thiJ; protein deglycase [EC:3.5.1.124] D BD65_453 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D BD65_3260 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D BD65_3061 CAAX protease self-immunity family protein K07052 K07052; CAAX protease family protein D BD65_1 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BD65_2101 peptidase M3 family protein K01414 prlC; oligopeptidase A [EC:3.4.24.70] D BD65_95 peptidase M3 family protein K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D BD65_101 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D BD65_2057 D-ala-D-ala dipeptidase family protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BD65_1221 insulinase family protein K01407 ptrA; protease III [EC:3.4.24.55] D BD65_2392 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BD65_1041 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D BD65_979 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BD65_80 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D BD65_2768 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D BD65_188 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D BD65_1196 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D BD65_1675 pepQ; xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D BD65_1280 hypothetical protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D BD65_2628 peptidase M28 family protein K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-] D BD65_2347 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BD65_518 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D BD65_991 peptidase M48 family protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D BD65_1188 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D BD65_895 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D BD65_731 mtfA; protein mtfA K09933 mtfA; MtfA peptidase D BD65_378 trypsin family protein K04775 ydgD; protease YdgD [EC:3.4.21.-] D BD65_2614 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D BD65_1500 peptidase Do family protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D BD65_1501 degS; periplasmic serine peptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D BD65_549 hypothetical protein K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D BD65_3186 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_2963 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_3096 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D BD65_803 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D BD65_2343 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D BD65_2832 clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D BD65_2834 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D BD65_12 hypothetical protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D BD65_1582 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BD65_1083 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BD65_545 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D BD65_519 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D BD65_232 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D BD65_292 peptidase S49 family protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D BD65_2124 glpG; rhomboid family protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D BD65_1841 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D BD65_1018 peptidase U32 family protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D BD65_2365 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D BD65_2366 hypothetical protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D BD65_1532 pmbA; protein pmbA K03592 pmbA; PmbA protein D BD65_1541 modulator of DNA gyrase family protein K03568 tldD; TldD protein D BD65_819 ecotin family protein K08276 eco; ecotin D BD65_1039 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin D BD65_2297 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D BD65_2296 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:yru01003] D BD65_2120 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D BD65_2084 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D BD65_1485 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BD65_1038 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BD65_2606 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D BD65_2151 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BD65_1767 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D BD65_1769 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:yru01005] D BD65_1183 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D BD65_1182 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D BD65_2562 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D BD65_1185 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D BD65_2904 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D BD65_3248 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D BD65_39 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D BD65_189 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D BD65_889 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D BD65_1562 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D BD65_782 yeiU; inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D BD65_1916 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D BD65_477 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D BD65_583 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D BD65_433 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D BD65_2069 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D BD65_151 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D BD65_3253 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D BD65_1511 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D BD65_1510 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D BD65_1915 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D BD65_1917 glycosyl transferase 2 family protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D BD65_1914 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D BD65_2452 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D BD65_2755 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D BD65_1161 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D BD65_1392 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D BD65_1913 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D BD65_1768 wzyE family protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27] D BD65_822 hypothetical protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D BD65_1778 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:yru01011] D BD65_1502 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BD65_1666 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BD65_2557 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BD65_2554 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BD65_2551 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BD65_600 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_2558 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BD65_215 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_1576 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BD65_1805 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BD65_2553 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BD65_2556 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BD65_1397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_3191 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BD65_167 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BD65_2151 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BD65_2606 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D BD65_1038 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BD65_2966 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D BD65_579 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_2550 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_3186 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_2963 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BD65_2343 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D BD65_803 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D BD65_3096 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D BD65_1485 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BD65_453 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D BD65_3260 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D BD65_2057 D-ala-D-ala dipeptidase family protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BD65_895 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D BD65_439 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D BD65_783 spr; lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D BD65_188 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D BD65_2485 soluble lytic murein transglycosylase L domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D BD65_1213 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D BD65_917 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D BD65_1323 hypothetical protein K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D BD65_2748 lysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D BD65_504 transglycosylase SLT domain protein K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29] D BD65_1071 bacterial extracellular solute-binding s, 3 family protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D BD65_61 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D BD65_2964 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D BD65_2291 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_1217 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_515 N-acetylmuramoyl-L-alanine amidase family protein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_2575 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_452 lpp; major outer membrane lipoprotein Lpp K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:yru01004] D BD65_56 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BD65_55 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BD65_890 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BD65_59 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BD65_57 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BD65_11 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D BD65_1184 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BD65_415 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BD65_2899 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BD65_2848 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D BD65_274 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D BD65_2838 tesC; long-chain acyl-CoA thioesterase tesC K12500 tesC; thioesterase III [EC:3.1.2.-] D BD65_2254 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BD65_200 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2542 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_1584 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D BD65_54 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BD65_1399 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BD65_1377 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:yru01008] D BD65_1349 mbtH-like family protein K05375 mbtH; MbtH protein D BD65_1339 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D BD65_735 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D / holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7] D BD65_1340 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D BD65_1348 amino acid adenylation domain protein K24101 vabF; L-arginine---[L-arginyl-carrier protein] ligase [EC:6.2.1.63] C 01006 Prenyltransferases [BR:yru01006] D BD65_2811 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D BD65_2336 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D BD65_1190 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BD65_2293 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BD65_1843 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D BD65_1585 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D BD65_2822 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:yru01007] D BD65_936 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BD65_2998 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D BD65_2601 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D BD65_425 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BD65_2163 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BD65_2906 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BD65_171 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BD65_3157 metG; methionine--tRNA ligase, beta subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BD65_2507 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BD65_2390 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BD65_2972 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BD65_1262 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BD65_178 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BD65_3266 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BD65_1031 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BD65_2034 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BD65_2035 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BD65_3233 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BD65_1167 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BD65_496 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BD65_2711 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BD65_492 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BD65_491 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BD65_3264 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D BD65_2027 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D BD65_849 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D BD65_920 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D BD65_1574 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D BD65_3173 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BD65_1912 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D BD65_3071 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D BD65_2176 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BD65_121 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D BD65_3069 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D BD65_2607 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D BD65_1790 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BD65_3241 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BD65_481 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D BD65_1771 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:yru00194] D BD65_1990 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BD65_1989 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BD65_1988 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BD65_1987 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BD65_1986 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BD65_1985 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BD65_1984 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BD65_1983 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BD65_1982 ATP synthase I chain family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:yru03000] D BD65_608 chbR; HTH-type transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D BD65_2488 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D BD65_111 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D BD65_1209 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BD65_1786 bacterial regulatory helix-turn-helix, lysR family protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D BD65_1698 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D BD65_2504 nhaR; transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D BD65_1810 oxyR; hydrogen peroxide-inducible activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BD65_1286 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BD65_2541 bacterial regulatory helix-turn-helix, lysR family protein K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D BD65_295 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BD65_1540 bacterial regulatory helix-turn-helix, lysR family protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D BD65_1795 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D BD65_3189 deoR-like helix-turn-helix domain protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D BD65_2123 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BD65_2435 deoR-like helix-turn-helix domain protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D BD65_3141 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BD65_1967 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BD65_1235 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BD65_1839 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BD65_2545 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BD65_1526 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D BD65_442 bacterial regulatory s, lacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D BD65_2111 gntR; HTH-type transcriptional regulator gntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D BD65_129 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BD65_212 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D BD65_2579 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BD65_1469 bacterial regulatory s, gntR family protein K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D BD65_2855 acrR; HTH-type transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D BD65_1925 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D BD65_434 nemR; HTH-type transcriptional repressor nemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BD65_1809 fabR; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D BD65_3092 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D BD65_1978 asnC; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D BD65_3229 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BD65_2843 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BD65_92 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D BD65_2126 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D BD65_429 winged helix DNA-binding domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BD65_1147 winged helix DNA-binding domain protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D BD65_2894 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BD65_2235 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D BD65_3002 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BD65_1581 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BD65_1621 iclR; acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BD65_516 kdgR; pectin degradation repressor protein kdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D BD65_2178 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BD65_360 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BD65_751 crp-like helix-turn-helix domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D BD65_1049 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D BD65_2300 nsrR; HTH-type transcriptional repressor nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D BD65_191 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BD65_1665 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BD65_1560 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BD65_2486 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D BD65_2333 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D BD65_2534 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator D BD65_2482 nadR; trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D BD65_1718 sugar diacid recognition family protein K02647 cdaR; carbohydrate diacid regulator D BD65_3062 ModE molybdate transport repressor domain protein K02019 modE; molybdate transport system regulatory protein D BD65_1836 met Apo-repressor, MetJ family protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D BD65_658 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BD65_2830 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BD65_1681 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH D BD65_2331 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D BD65_2994 marR family protein K02565 nagC; N-acetylglucosamine repressor D BD65_333 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D BD65_2044 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D BD65_398 tyrR; transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D BD65_656 hypothetical protein K03765 cadC; transcriptional activator of cad operon D BD65_988 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D BD65_407 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D BD65_404 pspC; phage shock protein C K03973 pspC; phage shock protein C D BD65_2460 AAA domain family protein K05880 dhaR; transcriptional activator for dhaKLM operon D BD65_1530 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D BD65_1109 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BD65_2407 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BD65_1432 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BD65_1305 hypothetical protein K07735 algH; putative transcriptional regulator D BD65_2602 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BD65_2804 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BD65_2771 crl; sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl D BD65_2547 mraZ family protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:yru03021] D BD65_2233 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BD65_1651 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BD65_1650 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BD65_1938 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BD65_1403 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BD65_2641 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D BD65_1088 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D BD65_1719 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D BD65_1515 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BD65_664 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D BD65_2528 rapA; RNA polymerase-associated protein rapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D BD65_2354 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D BD65_2807 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D BD65_1656 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D BD65_1495 putative stringent starvation protein A K03599 sspA; stringent starvation protein A D BD65_1494 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D BD65_2939 stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D BD65_2940 anti-anti-sigma factor family protein K04749 rsbV; anti-sigma B factor antagonist D BD65_2942 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D BD65_1087 rseA; sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D BD65_1086 rseB; sigma-E factor regulatory protein rseB K03598 rseB; sigma-E factor negative regulatory protein RseB D BD65_1085 rseC; sigma-E factor regulatory protein rseC K03803 rseC; sigma-E factor negative regulatory protein RseC D BD65_2602 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BD65_2344 greA; transcription elongation factor greA K03624 greA; transcription elongation factor GreA D BD65_2142 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D BD65_1779 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D BD65_1172 rof; protein rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:yru03019] D BD65_49 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D BD65_1544 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D BD65_1082 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BD65_2301 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BD65_2284 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D BD65_1781 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D BD65_3093 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D BD65_2361 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BD65_1740 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BD65_2359 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D BD65_1779 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D BD65_1855 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BD65_2501 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D BD65_2264 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BD65_2294 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D BD65_1002 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D BD65_2600 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D BD65_1229 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D BD65_2712 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D BD65_1549 csrD; RNase E specificity factor CsrD K18765 csrD; RNase E specificity factor CsrD D BD65_1844 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D BD65_2388 rraB; regulator of ribonuclease activity B K09893 rraB; regulator of ribonuclease activity B D BD65_1518 hypothetical protein K06958 rapZ; RNase adapter protein RapZ D BD65_380 hrpA; RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D BD65_2605 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:yru03011] D BD65_3244 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BD65_1195 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BD65_2214 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BD65_2232 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BD65_2225 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BD65_2313 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BD65_2202 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BD65_2222 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BD65_1496 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BD65_2207 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BD65_2231 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BD65_2201 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BD65_2230 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BD65_2221 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D BD65_2358 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BD65_2724 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BD65_2217 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BD65_2314 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BD65_2212 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BD65_2505 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BD65_1401 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BD65_1654 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BD65_2211 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BD65_2208 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BD65_2209 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BD65_2220 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BD65_2223 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BD65_2315 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BD65_1653 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BD65_1655 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BD65_1652 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BD65_1497 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BD65_2218 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BD65_2227 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BD65_2215 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BD65_2234 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BD65_2224 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BD65_2727 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BD65_493 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BD65_2337 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BD65_2213 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BD65_2210 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BD65_2219 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BD65_2338 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BD65_1921 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BD65_2216 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BD65_2226 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BD65_1837 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BD65_2852 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BD65_53 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D BD65_1920 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BD65_2016 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D BD65_494 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BD65_2229 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D BD65_793 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D BD65_1626 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2251 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2743 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1801 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1628 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1962 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1667 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1157 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1632 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1804 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2739 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1671 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1802 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1158 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2250 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1963 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1668 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2742 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:yru03009] D BD65_1082 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BD65_595 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D BD65_2284 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D BD65_1081 era; GTP-binding protein Era K03595 era; GTPase D BD65_2340 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D BD65_2602 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BD65_2354 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D BD65_2807 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D BD65_1656 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D BD65_791 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D BD65_2522 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BD65_2239 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BD65_2466 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D BD65_1723 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BD65_1303 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BD65_1981 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BD65_2548 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BD65_1480 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BD65_2102 SAM-dependent methyltransferase family protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D BD65_578 rlmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D BD65_2302 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BD65_2346 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BD65_3120 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D BD65_1458 ribosomal L11 methyltransferase family protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D BD65_2967 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BD65_24 rlmI; ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D BD65_2100 ribosomal RNA small subunit methyltransferase D, RsmJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D BD65_5 THUMP domain protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D BD65_1207 ftsJ-like methyltransferase family protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D BD65_1035 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BD65_2616 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BD65_3202 rumB; 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D BD65_621 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BD65_2527 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BD65_289 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BD65_50 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BD65_2736 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BD65_89 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D BD65_613 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D BD65_1151 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D BD65_2468 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D BD65_164 acetyltransferase family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D BD65_2725 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D BD65_3239 ycaO-type kinase domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D BD65_1558 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D BD65_897 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D BD65_81 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D BD65_49 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D BD65_1544 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D BD65_1307 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D BD65_554 dbpA; ATP-independent RNA helicase dbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D BD65_2361 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BD65_1091 DEAD/DEAH box helicase family protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D BD65_2283 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D BD65_1028 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D BD65_2295 hflX; GTP-binding protein HflX K03665 hflX; GTPase D BD65_2245 rimN; tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BD65_1939 spoT; bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BD65_2356 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D BD65_2353 rimP; ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D BD65_2918 hypothetical protein K14761 rlbA; ribosome-associated protein D BD65_2968 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D BD65_2981 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor D BD65_2345 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D BD65_2045 hypothetical protein K14762 yibL; ribosome-associated protein D BD65_1533 hypothetical protein K09889 yjgA; ribosome-associated protein D BD65_10 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor D BD65_1516 raiA; ribosome-associated inhibitor A K05808 hpf; ribosome hibernation promoting factor D BD65_2734 raiA; ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A D BD65_139 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase D BD65_52 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:yru03016] D BD65_1396 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D BD65_936 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BD65_1167 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BD65_2507 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BD65_2972 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BD65_3157 metG; methionine--tRNA ligase, beta subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BD65_2998 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D BD65_171 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BD65_1262 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BD65_178 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BD65_2711 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BD65_3266 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BD65_496 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BD65_3233 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BD65_2906 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BD65_2390 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BD65_1031 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BD65_492 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BD65_491 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BD65_425 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BD65_2163 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BD65_1946 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D BD65_66 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BD65_1320 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D BD65_1166 tsaA; tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D BD65_877 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D BD65_2357 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D BD65_2637 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D BD65_1048 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BD65_2245 rimN; tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BD65_2293 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BD65_2012 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D BD65_1980 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BD65_234 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D BD65_2321 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D BD65_2015 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D BD65_437 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D BD65_1927 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D BD65_310 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D BD65_201 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D BD65_2604 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D BD65_2483 ccmA; heme ABC exporter, ATP-binding protein CcmA K06020 ettA; energy-dependent translational throttle protein EttA D BD65_2034 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BD65_2035 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BD65_2601 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D BD65_2891 ybaK; cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D BD65_1072 cytidine and deoxycytidylate deaminase zinc-binding region family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D BD65_1580 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D BD65_1559 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D BD65_3094 dihydrouridine synthase family protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D BD65_2983 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D BD65_175 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D BD65_174 cmoB; tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D BD65_3256 methyltransferase small domain protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D BD65_1807 trmA; tRNA (uracil(54)-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D BD65_2726 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D BD65_1151 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D BD65_1940 trmH; tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D BD65_1050 RNA methyltransferase, TrmH, group 1 family protein K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D BD65_1902 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D BD65_1090 methyltransferase small domain protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D BD65_1201 RNA pseudouridylate synthase family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D BD65_621 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BD65_2527 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BD65_87 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BD65_392 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D BD65_1729 tusA; sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D BD65_2200 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D BD65_2199 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C D BD65_2198 tusD; sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D BD65_26 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D BD65_1046 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D BD65_1270 ygfZ; tRNA-modifying protein ygfZ K06980 ygfZ; tRNA-modifying protein YgfZ D BD65_891 mnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D BD65_2799 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D BD65_2839 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D BD65_2622 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D BD65_2621 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D BD65_1204 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D BD65_2288 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D BD65_2800 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D BD65_2813 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D BD65_1174 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D BD65_983 acetyltransferase family protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D BD65_198 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D BD65_1400 tsaD; tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D BD65_2290 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D BD65_1212 FAD dependent oxidoreductase family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D BD65_2301 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BD65_2359 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D BD65_137 PIN domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:yru03012] D BD65_306 hypothetical protein K03113 EIF1; translation initiation factor 1 D BD65_2355 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BD65_495 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BD65_2190 hypothetical protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D BD65_1194 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D BD65_2204 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_1658 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_2203 fusA; translation elongation factor G K02355 fusA; elongation factor G D BD65_2056 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D BD65_147 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D BD65_1192 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D BD65_148 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D BD65_141 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D BD65_3224 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D BD65_2267 efp; translation elongation factor P K02356 efp; elongation factor P D BD65_777 yeiP; elongation factor P-like protein K02356 efp; elongation factor P D BD65_2280 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D BD65_2266 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D BD65_893 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D BD65_1263 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D BD65_2469 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D BD65_2236 hypothetical protein K09890 arfA; alternative ribosome-rescue factor D BD65_1169 RF-1 domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:yru03110] D BD65_3223 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D BD65_2738 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D BD65_2833 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D BD65_1842 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D BD65_2501 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D BD65_1044 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D BD65_1006 hsp70 family protein K04046 yegD; hypothetical chaperone protein D BD65_2264 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BD65_2502 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D BD65_418 putative chaperone DnaJ K05516 cbpA; curved DNA-binding protein D BD65_2526 djlA; dnaJ-like protein djlA K05801 djlA; DnaJ like chaperone protein D BD65_1045 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D BD65_2146 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D BD65_1096 grpE family protein K03687 GRPE; molecular chaperone GrpE D BD65_2024 ibpA; small heat shock protein ibpA K04080 ibpA; molecular chaperone IbpA D BD65_2025 hsp20/alpha crystallin family protein K04081 ibpB; molecular chaperone IbpB D BD65_2147 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D BD65_2263 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D BD65_2614 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D BD65_2347 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BD65_1983 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BD65_2271 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_2039 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_1905 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BD65_1899 cpxP; periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy D BD65_599 hdeB; protein hdeB K19778 hdeB; acid stress chaperone HdeB D BD65_3001 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D BD65_2174 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D BD65_2905 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D BD65_2836 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D BD65_2196 domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D BD65_2317 fklB; FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D BD65_2509 fkpB; FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D BD65_2194 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase slyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D BD65_1784 ppiC; peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D BD65_2524 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D BD65_1780 trxA; thioredoxin K03671 TXN; thioredoxin D BD65_1152 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D BD65_2897 hypothetical protein K05838 ybbN; putative thioredoxin D BD65_3194 grxA; glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1 D BD65_1906 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D BD65_438 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D BD65_1957 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D BD65_210 disulfide bond formation DsbB family protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D BD65_1265 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D BD65_2258 dsbD; disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D BD65_907 dsbE; disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:yru04131] D BD65_1036 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BD65_227 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BD65_3054 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_190 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_451 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:yru04121] C 03051 Proteasome [BR:yru03051] D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:yru03032] D BD65_2751 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BD65_1636 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D BD65_2835 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D BD65_490 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D BD65_3245 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D BD65_2017 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D BD65_1577 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BD65_1402 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_1180 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BD65_2018 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BD65_2391 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BD65_2970 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BD65_63 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BD65_2752 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BD65_2867 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BD65_2467 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D BD65_544 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D BD65_1181 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_332 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein D BD65_2160 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D BD65_3007 seqA; protein seqA K03645 seqA; negative modulator of initiation of replication D BD65_993 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D BD65_813 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BD65_2020 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BD65_1378 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BD65_1381 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BD65_294 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BD65_235 topB; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:yru03036] D BD65_1082 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BD65_248 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D BD65_1636 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D BD65_2835 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D BD65_490 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D BD65_3245 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D BD65_418 putative chaperone DnaJ K05516 cbpA; curved DNA-binding protein D BD65_417 cbpM; chaperone modulatory protein CbpM K18997 cbpM; chaperone modulatory protein CbpM D BD65_2488 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D BD65_2017 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D BD65_1483 SIS domain protein K12961 diaA; DnaA initiator-associating protein D BD65_23 hemimethylated DNA binding domain protein K11940 hspQ; heat shock protein HspQ D BD65_3124 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein D BD65_1560 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BD65_2294 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D BD65_1286 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BD65_3229 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BD65_794 37-kD nucleoid-associated bacterial family protein K06899 ndpA; nucleoid-associated protein D BD65_3259 hypothetical protein K03632 mukB; chromosome partition protein MukB D BD65_3258 mukE; chromosome partition protein mukE K03804 mukE; chromosome partition protein MukE D BD65_3257 mukF; chromosome partition protein mukF K03633 mukF; chromosome partition protein MukF D BD65_2560 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D BD65_2634 ftsB; cell division protein ftsB K05589 ftsB; cell division protein FtsB D BD65_1721 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BD65_579 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_2550 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BD65_3230 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D BD65_2549 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D BD65_1840 ftsN; cell division protein FtsN K03591 ftsN; cell division protein FtsN D BD65_2559 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D BD65_2555 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D BD65_1720 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D BD65_2561 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BD65_943 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D BD65_1282 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D BD65_1845 zapB; cell division protein ZapB K09892 zapB; cell division protein ZapB D BD65_3 hypothetical protein K18657 zapC; cell division protein ZapC D BD65_2568 hypothetical protein K18778 zapD; cell division protein ZapD D BD65_1498 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE D BD65_2316 hypothetical protein K07269 ytfB; cell division protein YtfB D BD65_2291 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_1217 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_2854 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D BD65_204 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D BD65_203 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D BD65_202 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D BD65_15 sulA; cell division inhibitor sulA K13053 sulA; cell division inhibitor SulA D BD65_1925 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D BD65_3007 seqA; protein seqA K03645 seqA; negative modulator of initiation of replication D BD65_1548 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D BD65_1547 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D BD65_1546 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D BD65_2965 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D BD65_1378 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BD65_1381 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BD65_1980 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BD65_1981 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BD65_1751 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D BD65_1266 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D BD65_3158 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D BD65_1434 fic/DOC family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D BD65_1955 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:yru03400] D BD65_359 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BD65_3017 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BD65_1095 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D BD65_1321 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D BD65_311 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BD65_2566 mutator mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BD65_772 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BD65_1924 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BD65_2032 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BD65_1919 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BD65_238 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BD65_768 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D BD65_1638 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D BD65_1264 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BD65_1936 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_942 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BD65_1956 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BD65_1572 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BD65_3075 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BD65_648 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BD65_1749 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BD65_1651 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BD65_1650 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BD65_2233 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BD65_1938 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BD65_74 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BD65_2642 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BD65_2292 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D BD65_1230 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D BD65_756 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D BD65_1026 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BD65_2812 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BD65_548 exoX; exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D BD65_1180 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BD65_2018 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BD65_2391 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BD65_2970 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BD65_63 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BD65_2752 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BD65_2867 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BD65_2467 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D BD65_544 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_2160 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D BD65_1220 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D BD65_1222 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D BD65_1219 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BD65_2709 recA; protein RecA K03553 recA; recombination protein RecA D BD65_182 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BD65_183 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BD65_181 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D BD65_1838 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D BD65_2859 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N'' D BD65_2788 exonuclease SbcC family protein K03546 sbcC; DNA repair protein SbcC/Rad50 D BD65_2789 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D BD65_2481 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D BD65_2019 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D BD65_1941 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BD65_1080 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BD65_2869 recR; recombination protein RecR K06187 recR; recombination protein RecR D BD65_1098 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BD65_2786 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC D BD65_792 DEAD/DEAH box helicase family protein K19789 radD; DNA repair protein RadD D BD65_813 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BD65_2020 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BD65_294 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BD65_1636 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D BD65_2835 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D BD65_1560 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BD65_490 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D BD65_3245 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D BD65_1740 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BD65_248 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D BD65_2767 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BD65_1582 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BD65_2529 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D BD65_45 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D BD65_2710 recX; regulatory protein recX K03565 recX; regulatory protein D BD65_1783 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BD65_19 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D BD65_3118 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BD65_197 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BD65_1140 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_815 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BD65_816 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BD65_1141 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:yru03029] D BD65_2355 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BD65_495 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BD65_1194 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D BD65_2204 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_1658 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_2203 fusA; translation elongation factor G K02355 fusA; elongation factor G D BD65_1081 era; GTP-binding protein Era K03595 era; GTPase D BD65_425 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BD65_2972 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BD65_178 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BD65_171 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BD65_674 nucA; nuclease K01173 ENDOG; endonuclease G, mitochondrial D BD65_1571 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BD65_1187 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D BD65_2501 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D BD65_1096 grpE family protein K03687 GRPE; molecular chaperone GrpE D BD65_2264 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BD65_2263 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D BD65_2502 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D BD65_1048 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BD65_1045 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D BD65_438 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D BD65_3158 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D BD65_2822 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BD65_2013 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:yru02000] D BD65_3247 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D BD65_2844 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D BD65_2845 mdlB; multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D BD65_594 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D BD65_1819 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_103 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_3226 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BD65_3227 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BD65_3220 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D BD65_6 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein D BD65_953 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D BD65_1854 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D BD65_952 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D BD65_951 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D BD65_950 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D BD65_3064 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D BD65_3065 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D BD65_3066 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D BD65_634 yfuA; yfuA K02012 afuA; iron(III) transport system substrate-binding protein D BD65_748 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D BD65_635 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D BD65_749 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D BD65_636 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BD65_750 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BD65_2533 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D BD65_2532 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D BD65_2530 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D BD65_3197 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D BD65_3200 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D BD65_3199 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D BD65_3198 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D BD65_1144 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D BD65_1143 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D BD65_1142 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BD65_3108 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D BD65_3109 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein D BD65_3111 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D BD65_3110 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D BD65_1591 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D BD65_1592 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein D BD65_1593 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein D BD65_1589 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BD65_3143 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D BD65_3145 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein D BD65_3144 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D BD65_1969 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D BD65_1970 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D BD65_1971 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BD65_1703 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BD65_1702 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BD65_1701 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BD65_1700 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BD65_1258 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BD65_1506 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BD65_1260 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BD65_1507 putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BD65_1259 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BD65_1508 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BD65_1257 hypothetical protein K18480 linN; cholesterol transport system auxiliary component D BD65_1505 putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein D BD65_1504 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D BD65_1124 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D BD65_1121 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D BD65_1122 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D BD65_1123 ccmA; heme ABC exporter, ATP-binding protein CcmA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D BD65_1996 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_2792 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D BD65_1997 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D BD65_1001 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein D BD65_1998 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BD65_1000 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BD65_1999 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BD65_999 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BD65_3103 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D BD65_3104 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BD65_3105 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BD65_3102 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D BD65_867 hisM; histidine transport system permease protein hisM K10015 hisM; histidine transport system permease protein D BD65_868 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D BD65_866 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D BD65_869 argT; lysine-arginine-ornithine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D BD65_3123 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D BD65_3122 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D BD65_3121 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D BD65_3203 artJ; ABC transporter arginine-binding protein 1 K09996 artJ; arginine transport system substrate-binding protein D BD65_3206 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein D BD65_3204 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein D BD65_3205 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein D BD65_3207 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D BD65_2977 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D BD65_2975 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D BD65_2976 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D BD65_2974 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D BD65_661 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D BD65_660 yecS; inner membrane amino-acid ABC transporter permease protein yecS K10009 tcyB; L-cystine transport system permease protein D BD65_659 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D BD65_1714 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BD65_1713 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D BD65_1712 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D BD65_1711 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BD65_1710 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D BD65_1164 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein D BD65_1163 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein D BD65_1162 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BD65_3074 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D BD65_2001 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D BD65_2002 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D BD65_2003 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D BD65_252 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_253 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_394 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BD65_254 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D BD65_255 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D BD65_256 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D BD65_257 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D BD65_2074 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D BD65_2075 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D BD65_2076 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D BD65_2077 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D BD65_2078 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D BD65_410 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D BD65_411 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D BD65_412 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D BD65_413 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D BD65_414 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D BD65_785 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D BD65_786 yejB; inner membrane ABC transporter permease protein yejB K13894 yejB; microcin C transport system permease protein D BD65_787 yejE; inner membrane ABC transporter permease protein yejE K13895 yejE; microcin C transport system permease protein D BD65_788 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D BD65_469 hmuT; hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein D BD65_470 fecCD transport family protein K25133 hmuU; heme transport system permease protein D BD65_471 hmuV; hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D BD65_1342 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D BD65_1344 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein D BD65_1345 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein D BD65_1346 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D BD65_762 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BD65_2778 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BD65_3078 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BD65_761 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D BD65_3079 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D BD65_760 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BD65_3080 hypothetical protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BD65_2611 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein D BD65_483 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein D BD65_482 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D BD65_187 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D BD65_185 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D BD65_186 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D BD65_505 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D BD65_507 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein D BD65_508 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D BD65_506 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D BD65_2393 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D BD65_2394 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D BD65_1514 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D BD65_3088 ybhR; inner membrane transport permease ybhR K25180 ybhR; drug efflux transport system permease protein D BD65_3089 ABC-2 type transporter family protein K25181 ybhS; drug efflux transport system permease protein D BD65_3090 ccmA; heme ABC exporter, ATP-binding protein CcmA K25182 ybhF; drug efflux transport system ATP-binding protein D BD65_3091 efflux transporter, RND family, MFP subunit K25183 ybhG; membrane fusion protein YbhG D BD65_75 lolC; lipo-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein D BD65_77 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D BD65_76 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BD65_910 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D BD65_911 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D BD65_912 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D BD65_913 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D BD65_1720 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D BD65_1721 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BD65_2594 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D BD65_2593 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BD65_2901 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D BD65_2900 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BD65_457 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D BD65_326 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D BD65_447 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D BD65_2536 setA; sugar efflux transporter A K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D BD65_2498 organic Anion Transporter Polypeptide family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D BD65_924 major Facilitator Superfamily protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D BD65_954 putative sialic acid transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter D BD65_1468 exuT; hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D BD65_1054 lacY proton/sugar symporter family protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D BD65_2817 phosphoglycerate transporter family protein K11382 pgtP; MFS transporter, OPA family, phosphoglycerate transporter protein D BD65_1735 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D BD65_747 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D BD65_2072 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D BD65_1233 lplT; lysophospholipid transporter lplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D BD65_1343 entS; enterobactin exporter EntS K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter D BD65_2828 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D BD65_216 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BD65_790 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BD65_1849 major Facilitator Superfamily protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD D BD65_2058 mdfA; multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D BD65_163 major Facilitator Superfamily protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D BD65_2137 major Facilitator Superfamily protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D BD65_1150 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D BD65_517 major Facilitator Superfamily protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D BD65_1014 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D BD65_3235 major Facilitator Superfamily protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D BD65_2169 major Facilitator Superfamily protein K06141 tsgA; MFS transporter, TsgA protein D BD65_947 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BD65_1228 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D BD65_946 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D BD65_1519 ptsO; phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr D BD65_771 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D BD65_948 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D BD65_65 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D BD65_2997 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D BD65_1525 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D BD65_769 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BD65_2042 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BD65_609 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D BD65_612 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D BD65_611 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D BD65_562 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BD65_563 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D BD65_564 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D BD65_2441 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D BD65_2438 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D BD65_2439 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D BD65_2440 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D BD65_858 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D BD65_859 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D BD65_860 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component D BD65_1517 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D BD65_2459 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D BD65_1846 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D BD65_673 trkA-N domain protein K10716 kch; voltage-gated potassium channel D BD65_2847 amtB; ammonia channel K03320 amt; ammonium transporter, Amt family D BD65_1569 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_423 gstB; glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_3180 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BD65_1495 putative stringent starvation protein A K03599 sspA; stringent starvation protein A D BD65_3238 focA; formate transporter FocA K06212 focA; formate transporter D BD65_2165 putative nitrite transporter K02598 nirC; nitrite transporter D BD65_2237 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D BD65_2857 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D BD65_2281 mechanosensitive ion channel family protein K22051 mscM; miniconductance mechanosensitive channel D BD65_1289 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D BD65_3128 divalent cation transporter family protein K06213 mgtE; magnesium transporter D BD65_1005 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D BD65_717 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BD65_716 motB; motility protein B K02557 motB; chemotaxis protein MotB D BD65_1368 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D BD65_1367 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D BD65_3041 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D BD65_3042 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D BD65_1744 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D BD65_393 corA-like Mg2+ transporter family protein K16074 zntB; zinc transporter D BD65_2955 crcB; protein CrcB K06199 crcB; fluoride exporter D BD65_2323 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BD65_2721 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BD65_3265 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D BD65_3117 phoE; outer membrane pore protein E K11929 phoE; outer membrane pore protein E D BD65_807 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D BD65_1588 lamB; maltoporin K02024 lamB; maltoporin D BD65_14 ompA; outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family D BD65_3127 ompX; outer membrane protein X K11934 ompX; outer membrane protein X D BD65_903 outer membrane transport family protein K06076 fadL; long-chain fatty acid transport protein D BD65_269 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2008 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2038 outer membrane usher family protein K07347 fimD; outer membrane usher protein D BD65_1009 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_1459 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D BD65_1806 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter D BD65_1820 heme-binding A family protein K12545 hasA; heme acquisition protein HasA D BD65_1821 hasR; hasR protein K16152 hasR; heme acquisition protein HasR D BD65_759 tonB dependent receptor family protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D BD65_467 shuA; outer membrane heme receptor ShuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D BD65_1351 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D BD65_2171 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D BD65_2779 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D BD65_3077 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D BD65_105 type I secretion outer membrane, TolC family protein K12538 hasF; outer membrane protein, type I secretion system D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_1187 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D BD65_1029 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D BD65_986 nlpB/DapX lipofamily protein K07287 bamC; outer membrane protein assembly factor BamC D BD65_2735 hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD D BD65_1099 smpA; small protein A K06186 bamE; outer membrane protein assembly factor BamE D BD65_2325 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA D BD65_2326 hypothetical protein K09800 tamB; translocation and assembly module TamB D BD65_2429 outer membrane beta-barrel domain protein K22110 kdgM; oligogalacturonate-specific porin family protein D BD65_1513 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D BD65_1512 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D BD65_2525 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein D BD65_2971 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein D BD65_2087 tetratricopeptide repeat family protein K20543 bcsC; cellulose synthase operon protein C D BD65_2679 secretion system effector C (SseC) like family protein K13285 sipB; invasin B D BD65_2681 invasion plasmid antigen IpaD family protein K13287 sipD; invasin D D BD65_1177 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D BD65_409 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D BD65_2980 corC; magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein D BD65_1565 lrgA family protein K06518 cidA; holin-like protein D BD65_3152 lrgA family protein K06518 cidA; holin-like protein D BD65_763 amino acid permease family protein K11733 lysP; lysine-specific permease D BD65_584 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP D BD65_2578 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP D BD65_2794 amino acid permease family protein K11736 proY; proline-specific permease ProY D BD65_653 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D BD65_2065 amino acid permease family protein K16234 hutT; histidine transporter D BD65_2370 potE; putrescine-ornithine antiporter K03756 potE; putrescine:ornithine antiporter D BD65_655 transporter, basic amino acid/polyamine antiporter family protein K03757 cadB; cadaverine:lysine antiporter D BD65_593 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease D BD65_617 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease D BD65_367 putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D BD65_3112 adiC; arginine/agmatine antiporter K03759 adiC; arginine:agmatine antiporter D BD65_623 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D BD65_1856 fieF; ferrous-iron efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF D BD65_2853 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D BD65_975 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump D BD65_1012 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump D BD65_1013 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump D BD65_390 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump D BD65_2274 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D BD65_195 small Multidrug Resistance family protein K11742 mdtI; spermidine export protein MdtI D BD65_194 mdtJ; spermidine export mdtJ domain protein K11743 mdtJ; spermidine export protein MdtJ D BD65_3009 eamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D BD65_3126 rhtA; inner membrane transporter rhtA K11939 rhtA; inner membrane transporter RhtA D BD65_1743 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD D BD65_476 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D BD65_338 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D BD65_2112 gntT; high-affinity gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter D BD65_1717 na+/H+ antiporter family protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D BD65_2260 dcuA; anaerobic C4-dicarboxylate transporter dcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D BD65_2729 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D BD65_1127 transporter, lactate permease family protein K03303 lutP; lactate permease D BD65_114 chaA; calcium/proton exchanger family protein K07300 chaA; Ca2+:H+ antiporter D BD65_1509 sodium/calcium exchanger family protein K07301 yrbG; cation:H+ antiporter D BD65_2106 phosphate transporter family protein K16322 pit; low-affinity inorganic phosphate transporter D BD65_1557 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D BD65_657 putP; sodium/proline symporter K11928 putP; sodium/proline symporter D BD65_2252 actP; cation/acetate symporter ActP K14393 actP; cation/acetate symporter D BD65_2255 dicarboxylate symporter family protein K11102 gltP; proton glutamate symport protein D BD65_2089 dctA; aerobic C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D BD65_1463 dicarboxylate symporter family protein K07862 sstT; serine/threonine transporter D BD65_1942 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D BD65_2503 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D BD65_211 nhaB; Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D BD65_616 na+/H+ antiporter family protein K03315 nhaC; Na+:H+ antiporter, NhaC family D BD65_1567 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D BD65_30 trkA-C domain protein K11105 cvrA; potassium/hydrogen antiporter D BD65_2192 transporter, monovalent cation:proton antiporter-2 family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D BD65_2191 NADPH-dependent FMN reductase family protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D BD65_2876 transporter, monovalent cation:proton antiporter-2 family protein K26735 KEA4_5_6; K+:H+ antiporter D BD65_1673 potassium uptake, TrkH family protein K03498 trkH; trk/ktr system potassium uptake protein D BD65_2238 trkA; trk system potassium uptake protein trkA K03499 trkA; trk/ktr system potassium uptake protein D BD65_994 uracil-xanthine permease family protein K02824 uraA; uracil permease D BD65_1943 pbuX; xanthine permease family protein K16345 xanP; xanthine permease XanP D BD65_1568 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D BD65_2004 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D BD65_930 nupC; nucleoside permease nupC K11535 nupC; nucleoside transport protein D BD65_824 aromatic amino acid transport family protein K03834 tyrP; tyrosine-specific transport protein D BD65_776 aromatic amino acid transport family protein K03835 mtr; tryptophan-specific transport protein D BD65_3188 stp; serine transporter family protein K03837 sdaC; serine transporter D BD65_1334 stp; serine transporter family protein K03838 tdcC; threonine transporter D BD65_2363 yhaO; inner membrane transport protein YhaO K26604 cyuP; cysteine uptake transport protein D BD65_736 citT; citrate carrier K09477 citT; citrate:succinate antiporter D BD65_2608 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family D BD65_335 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D BD65_152 sulP; sulfate permease family protein K03321 TC.SULP; sulfate permease, SulP family D BD65_929 mntH; manganese transport protein mntH K03322 mntH; manganese transport protein D BD65_3163 transporter, anaerobic C4-dicarboxylate uptake C family protein K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family D BD65_1770 wzxE; protein wzxE K16693 wzxE; enterobacterial common antigen flippase D BD65_167 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BD65_1973 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein D BD65_1288 lysE; L-lysine exporter family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D BD65_1739 rhtC; threonine efflux protein K05835 rhtC; threonine efflux protein D BD65_2514 lysE type translocator family protein K05835 rhtC; threonine efflux protein D BD65_2108 leuE; leucine efflux protein K11250 leuE; leucine efflux protein D BD65_2862 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D BD65_2863 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D BD65_2864 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D BD65_1537 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB D BD65_990 hypothetical protein K03548 perM; putative permease D BD65_1730 hypothetical protein K09125 yhhQ; queuosine precursor transporter D BD65_2934 VIT family protein K22736 VIT; vacuolar iron transporter family protein D BD65_503 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D BD65_2555 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D BD65_566 hypothetical protein K23242 mntP; manganese efflux pump family protein D BD65_1052 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D BD65_273 hypothetical protein K03832 tonB; periplasmic protein TonB D BD65_1817 hypothetical protein K03832 tonB; periplasmic protein TonB D BD65_3045 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D BD65_3043 tolA; protein TolA K03646 tolA; colicin import membrane protein D BD65_3044 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D BD65_886 cytochrome C biogenesis transmembrane region family protein K08344 scsB; suppressor for copper-sensitivity B D BD65_773 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D BD65_774 molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D BD65_1149 efflux pump membrane family protein K03543 emrA; membrane fusion protein, multidrug efflux system D BD65_104 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D BD65_1818 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D BD65_2854 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D BD65_3063 hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump D BD65_1011 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D BD65_3219 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D BD65_1538 efflux transporter, RND family, MFP subunit K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA D BD65_3051 pnuC; nicotinamide mononucleotide transporter PnuC family protein K03811 pnuC; nicotinamide mononucleotide transporter D BD65_2135 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D BD65_2134 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D BD65_2133 feoC; ferrous iron transport protein C K07490 feoC; ferrous iron transport protein C D BD65_2105 uspB; universal stress protein B K06144 uspB; universal stress protein B D BD65_908 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D BD65_389 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D BD65_721 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D BD65_541 copper resistance D family protein K07245 pcoD; copper resistance protein D D BD65_542 yobA; protein YobA K07156 copC; copper resistance protein C D BD65_224 mipA; mltA-interacting protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:yru02044] D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_1819 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_103 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BD65_104 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D BD65_1818 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D BD65_105 type I secretion outer membrane, TolC family protein K12538 hasF; outer membrane protein, type I secretion system D BD65_2700 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D BD65_1252 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D BD65_2699 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D BD65_1251 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D BD65_2698 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D BD65_1250 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F D BD65_2697 gspF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D BD65_1249 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D BD65_2696 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D BD65_2695 gspH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D BD65_1248 hypothetical protein K02457 gspH; general secretion pathway protein H D BD65_1247 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D BD65_2694 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D BD65_1246 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D BD65_2693 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D BD65_1245 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D BD65_2692 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D BD65_1244 type II secretion system (T2SS), L family protein K02461 gspL; general secretion pathway protein L D BD65_2691 gspL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D BD65_2690 type II secretion system (T2SS), M family protein K02462 gspM; general secretion pathway protein M D BD65_2689 outO; type 4 prepilin-like proteins leader peptide-processing enzyme K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D BD65_2688 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S D BD65_1034 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D BD65_1310 twitching motility family protein K02669 pilT; twitching motility protein PilT D BD65_1355 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BD65_1356 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D BD65_1357 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D BD65_1359 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D BD65_1360 ATP synthase alpha/beta family, nucleotide-binding domain protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D BD65_1361 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D BD65_1362 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D BD65_1363 tetratricopeptide repeat family protein K12512 tadD; tight adherence protein D D BD65_1364 tadE-like family protein K12513 tadE; tight adherence protein E D BD65_1365 putative tadF K12514 tadF; tight adherence protein F D BD65_1366 von Willebrand factor type A domain protein K12515 tadG; tight adherence protein G D BD65_1225 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A D BD65_1224 putative prepilin peptidase-dependent protein B K02680 ppdB; prepilin peptidase dependent protein B D BD65_2573 hypothetical protein K02682 ppdD; prepilin peptidase dependent protein D D BD65_2572 type II/IV secretion system family protein K02504 hofB; protein transport protein HofB D BD65_2571 type II secretion system (T2SS), F family protein K02505 hofC; protein transport protein HofC D BD65_2152 putative ATPases of the HSP70 class involved in cell division K12288 hofM; pilus assembly protein HofM D BD65_2153 fimbrial assembly family protein K12289 hofN; pilus assembly protein HofN D BD65_2154 hypothetical protein K12290 hofO; pilus assembly protein HofO D BD65_2155 hypothetical protein K12291 hofP; pilus assembly protein HofP D BD65_2156 pilQ; type IV pilus secretin PilQ family protein K02507 hofQ; protein transport protein HofQ D BD65_1313 YGGT family protein K02221 yggT; YggT family protein D BD65_2837 competence ComEA helix-hairpin-helix repeat region domain protein K02237 comEA; competence protein ComEA D BD65_3246 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D BD65_2663 hypothetical protein K03221 yscF; type III secretion protein F D BD65_2673 surface presentation of antigens family protein K03225 yscQ; type III secretion protein Q D BD65_2668 invA; invasion protein invA K03230 yscV; type III secretion protein V D BD65_2666 type III secretion outer membrane pore, YscC/HrcC family K22504 invG; type III secretion system outer membrane ring protein D BD65_2661 type III secretion apparatus lipoprotein, YscJ/HrcJ family K22505 prgK; type III secretion system inner membrane ring protein D BD65_2670 putative ATP synthase SpaL K22506 spaL; type III secretion system ATPase [EC:7.4.2.8] D BD65_2674 epaP; type III secretion apparatus protein, YscR/HrcR family K22507 spaP; type III secretion system export apparatus protein D BD65_2675 type III secretion, HrpO family protein K22508 spaQ; type III secretion system export apparatus protein D BD65_2676 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K22509 spaR; type III secretion system export apparatus protein D BD65_2677 spaS; surface presentation of antigens protein spaS K22510 spaS; type III secretion system export apparatus switch protein D BD65_2667 type III secretion regulator YopN/LcrE/InvE/MxiC K22511 invE; type III secretion system protein D BD65_2669 invasion B family protein K22512 spaK; type III secretion system chaperone D BD65_2664 type III secretion system PrgH-EprH family protein K22488 prgH; type III secretion system protein D BD65_2662 putative cell invasion protein-cytoplasmic K22487 prgJ; type III secretion system protein D BD65_704 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BD65_705 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BD65_676 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BD65_678 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D BD65_679 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BD65_684 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BD65_685 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D BD65_686 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BD65_687 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BD65_688 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BD65_1265 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D BD65_1459 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D BD65_1598 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_168 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_1599 shlA; hemolysin K11016 shlA; hemolysin D BD65_169 hypothetical protein K11016 shlA; hemolysin D BD65_1609 phage-related baseplate assembly family protein K11904 vgrG; type VI secretion system secreted protein VgrG D BD65_2270 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2273 fimA; type-1 fimbrial protein, A chain K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_1007 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2009 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2271 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_2039 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_269 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2008 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2038 outer membrane usher family protein K07347 fimD; outer membrane usher protein D BD65_1009 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2037 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2040 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2041 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2272 hypothetical protein K12518 papC; outer membrane usher protein PapC D BD65_2911 hypothetical protein K12518 papC; outer membrane usher protein PapC D BD65_2912 hypothetical protein K12519 papD; chaperone protein PapD D BD65_2565 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BD65_1905 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BD65_2802 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BD65_1657 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D BD65_2803 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D BD65_2350 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D BD65_2564 secretion monitor family protein K13301 secM; secretion monitor D BD65_2228 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D BD65_2723 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BD65_1722 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BD65_2801 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D BD65_2013 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D BD65_1686 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D BD65_1685 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BD65_1684 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D BD65_2959 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE C 02042 Bacterial toxins [BR:yru02042] D BD65_1177 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D BD65_409 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D BD65_597 endonuclease/Exonuclease/phosphatase family protein K11014 cdtB; cytolethal distending toxin subunit B D BD65_1929 voltage-dependent anion channel family protein K11041 eta; exfoliative toxin A/B D BD65_2323 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BD65_2721 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BD65_1599 shlA; hemolysin K11016 shlA; hemolysin D BD65_169 hypothetical protein K11016 shlA; hemolysin D BD65_1598 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_168 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D BD65_1271 hypothetical protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:yru02022] D BD65_2791 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BD65_2790 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D BD65_82 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D BD65_83 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D BD65_2144 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BD65_2143 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BD65_371 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D BD65_370 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D BD65_1901 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D BD65_1900 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D BD65_1015 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D BD65_1016 hypothetical protein K07664 baeR; two-component system, OmpR family, response regulator BaeR D BD65_2341 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D BD65_2342 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D BD65_3011 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D BD65_3010 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D BD65_1487 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D BD65_2491 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D BD65_2866 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BD65_2865 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D BD65_116 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D BD65_973 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D BD65_2071 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D BD65_2070 uhpA; transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D BD65_746 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D BD65_745 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D BD65_812 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D BD65_810 his Kinase A domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D BD65_811 rcsB; rcsB protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D BD65_2615 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D BD65_649 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D BD65_3050 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D BD65_2654 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D BD65_3052 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D BD65_743 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D BD65_744 dpiA; transcriptional regulatory protein DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB D BD65_99 dcuS; sensor protein dcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D BD65_98 dcuR; transcriptional regulatory protein dcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR D BD65_2116 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D BD65_922 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D BD65_923 ypdB; response regulator K02477 K02477; two-component system, LytTR family, response regulator D BD65_2730 response regulator K02477 K02477; two-component system, LytTR family, response regulator D BD65_1951 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BD65_1952 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D BD65_1068 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D BD65_1066 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D BD65_2815 pgtB; phosphoglycerate transport system sensor protein pgtB K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BD65_2814 pgtA; transport activator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D BD65_715 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BD65_709 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BD65_710 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BD65_246 hnr; protein hnr K02485 rssB; two-component system, response regulator C 02035 Bacterial motility proteins [BR:yru02035] D BD65_715 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BD65_714 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D BD65_711 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BD65_710 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BD65_709 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BD65_708 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D BD65_2005 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_3004 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D BD65_713 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_640 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D BD65_2047 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D BD65_722 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D BD65_712 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D BD65_678 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D BD65_679 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BD65_680 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BD65_685 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D BD65_686 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BD65_687 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BD65_688 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BD65_704 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BD65_705 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BD65_703 flhE; flagellar protein flhE K03516 flhE; flagellar protein FlhE D BD65_677 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BD65_683 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BD65_684 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BD65_676 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BD65_692 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D BD65_700 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D BD65_693 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D BD65_682 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D BD65_675 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BD65_681 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D BD65_699 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BD65_698 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BD65_697 flgD; basal-body rod modification protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD D BD65_695 flgF; flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF D BD65_694 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D BD65_691 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D BD65_696 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D BD65_690 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BD65_689 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D BD65_702 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D BD65_665 flaA; flagellin K02406 fliC; flagellin D BD65_666 flaA; flagellin K02406 fliC; flagellin D BD65_667 flaA; flagellin K02406 fliC; flagellin D BD65_668 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D BD65_669 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D BD65_670 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT D BD65_719 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D BD65_718 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D BD65_664 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D BD65_717 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BD65_716 motB; motility protein B K02557 motB; chemotaxis protein MotB D BD65_661 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D BD65_663 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ D BD65_701 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D BD65_1310 twitching motility family protein K02669 pilT; twitching motility protein PilT D BD65_1034 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D BD65_1355 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BD65_1356 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D BD65_1357 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D BD65_1359 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D BD65_1360 ATP synthase alpha/beta family, nucleotide-binding domain protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D BD65_2270 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2273 fimA; type-1 fimbrial protein, A chain K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_1007 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2009 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D BD65_2271 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_2039 hypothetical protein K07346 fimC; fimbrial chaperone protein D BD65_269 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2008 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2038 outer membrane usher family protein K07347 fimD; outer membrane usher protein D BD65_1009 hypothetical protein K07347 fimD; outer membrane usher protein D BD65_2006 fimbrial family protein K07352 sfmA; type 1 fimbrial protein D BD65_2037 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2040 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D BD65_2041 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:yru04812] D BD65_1548 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D BD65_2561 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BD65_2560 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D BD65_204 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D BD65_203 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D BD65_202 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor C 04147 Exosome [BR:yru04147] D BD65_2871 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D BD65_2620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BD65_227 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BD65_1291 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BD65_190 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_451 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BD65_2174 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D BD65_2797 hypothetical protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D BD65_2264 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BD65_2501 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D BD65_1595 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BD65_1025 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BD65_2204 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_1658 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D BD65_66 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BD65_326 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D BD65_200 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2542 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BD65_2872 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D BD65_2182 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BD65_2861 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BD65_1822 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BD65_1823 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BD65_3184 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D BD65_352 beta-eliminating lyase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D BD65_2329 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D BD65_3058 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D BD65_2117 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D BD65_1847 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BD65_1950 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BD65_1682 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D BD65_1284 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BD65_1633 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BD65_1813 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_2582 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BD65_192 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BD65_1853 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BD65_3054 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BD65_2275 lipocalin-like domain protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:yru02048] D BD65_1419 hsdR; type I site-specific deoxyribonuclease, HsdR family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D BD65_2415 hsdR; type I site-specific deoxyribonuclease, HsdR family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D BD65_1417 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D BD65_2419 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D BD65_1416 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D BD65_2420 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D BD65_2160 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D BD65_1326 chpB; mRNA interferase ChpB K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-] D BD65_1325 chpS; antitoxin ChpS K18842 chpS; antitoxin ChpS D BD65_918 hypothetical protein K18843 hicB; antitoxin HicB D BD65_2850 hha; hemolysin expression-modulating protein K05839 hha; haemolysin expression modulating protein D BD65_2851 biofilm formation regulator YbaJ family protein K19162 tomB; hha toxicity modulator TomB D BD65_404 pspC; phage shock protein C K03973 pspC; phage shock protein C D BD65_405 pspB; phage shock protein B K03970 pspB; phage shock protein B D BD65_137 PIN domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D BD65_136 antidote-toxin recognition MazE family protein K18829 mvpT; antitoxin VapB D BD65_44 bssS family protein K12148 bssS; biofilm regulator BssS D BD65_2561 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BD65_1548 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D BD65_1378 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BD65_1381 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BD65_936 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BD65_1407 ykfI; toxin YkfI K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D BD65_1408 putative antitoxin YfjZ K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins D BD65_1268 hypothetical protein K19168 cptA; toxin CptA D BD65_1269 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB D BD65_1048 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BD65_2405 DGQHR domain protein K19169 dndB; DNA sulfur modification protein DndB D BD65_2404 dndC; putative sulfurtransferase DndC K19170 dndC; DNA sulfur modification protein DndC D BD65_2403 dndD; DNA sulfur modification protein DndD K19171 dndD; DNA sulfur modification protein DndD D BD65_2402 dndE; DNA sulfur modification protein DndE K19172 dndE; DNA sulfur modification protein DndE D BD65_2397 dptF; DNA phosphorothioation-dependent restriction protein DptF K19173 dptF; DNA phosphorothioation-dependent restriction protein DptF D BD65_2398 dptG; DNA phosphorothioation-dependent restriction protein DptG K19174 dptG; DNA phosphorothioation-dependent restriction protein DptG D BD65_2399 dptH; DNA phosphorothioation-dependent restriction protein DptH K19175 dptH; DNA phosphorothioation-dependent restriction protein DptH C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:yru01504] D BD65_2058 mdfA; multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D BD65_2057 D-ala-D-ala dipeptidase family protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BD65_82 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D BD65_83 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D BD65_2854 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D BD65_2853 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D BD65_2894 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BD65_1386 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D BD65_3265 gram-negative porin family protein K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:yru00536] D BD65_1454 hemagluttinin repeat family protein K15125 fhaB; filamentous hemagglutinin D BD65_1455 hypothetical protein K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:yru03100] D BD65_937 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_938 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1630 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1669 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_2741 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BD65_1765 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2714 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2716 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_2715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_915 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BD65_732 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_733 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_752 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BD65_2753 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_1800 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_2744 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BD65_645 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BD65_2988 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_2985 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_2989 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BD65_1159 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1803 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_2249 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1964 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BD65_1660 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2287 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_646 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2286 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_1261 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_2285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BD65_1764 tRNA-His K14226 tRNA-His; tRNA His D BD65_1631 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_1670 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_2740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BD65_1762 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2463 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2465 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2464 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2990 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_644 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2351 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_2395 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BD65_652 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_3047 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_931 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_3048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BD65_2986 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_2991 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1404 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1214 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1216 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_2352 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1215 tRNA-Met K14230 tRNA-Met; tRNA Met D BD65_1324 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BD65_2256 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BD65_797 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_1761 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_2073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BD65_2713 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_155 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_157 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_27 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_806 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BD65_1627 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1659 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1662 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_805 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BD65_1799 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BD65_1661 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_241 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_242 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BD65_932 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_933 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_935 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_448 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_450 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_449 tRNA-Val K14237 tRNA-Val; tRNA Val D BD65_1632 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1804 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2739 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1671 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_2248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BD65_1802 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1158 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2250 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1963 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1668 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_2742 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BD65_1626 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2251 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_2743 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1801 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1628 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1962 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1667 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BD65_1157 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D BD65_1374 dkgA; 2,5-diketo-D-gluconic acid reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D BD65_2446 anaerobic sulfatase maturase K24118 atsB; serine-type anaerobic sulfatase-maturating enzyme [EC:1.1.98.7] D BD65_1457 flavin oxidoreductase / NADH oxidase family protein K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D BD65_43 solA; N-methyl-L-tryptophan oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-] D BD65_1578 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D BD65_1379 flavodoxin-like fold family protein K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D BD65_381 NADPH-dependent FMN reductase family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D BD65_2324 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D BD65_228 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D BD65_864 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D BD65_1551 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D BD65_2702 prokaryotic cytochrome b561 family protein K12262 cybB; superoxide oxidase [EC:1.10.3.17] D BD65_2935 hypothetical protein K12262 cybB; superoxide oxidase [EC:1.10.3.17] D BD65_989 putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D BD65_397 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D BD65_960 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D BD65_2110 putative quercetin 2,3-dioxygenase yhhW K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D BD65_1057 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D BD65_543 ferritin-like domain protein K02217 ftnA; ferritin [EC:1.16.3.2] D BD65_2590 cueO; blue copper oxidase CueO K14588 cueO; cuproxidase [EC:1.16.3.4] D BD65_1850 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D BD65_992 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D BD65_2385 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D BD65_3236 pflA; pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D BD65_3213 2Fe-2S iron-sulfur cluster binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D BD65_2639 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D BD65_445 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D BD65_1447 methyltransferase small domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D BD65_3125 tam; trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D BD65_324 tehB; tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D BD65_2979 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D BD65_2369 acetyltransferase domain protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D BD65_2031 acetyltransferase family protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D BD65_2389 acetyltransferase domain protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D BD65_3225 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D BD65_1153 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D BD65_1227 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D BD65_2764 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D BD65_465 putative phosphotransferase ydiA K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D BD65_1393 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D BD65_154 diguanylate cyclase domain protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D BD65_472 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D BD65_1622 isocitrate dehydrogenase kinase/phosphatase family protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D BD65_1350 hypothetical protein K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108] D BD65_3040 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D BD65_287 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D BD65_899 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D BD65_3263 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D BD65_784 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D BD65_2088 diguanylate cyclase domain protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52] D BD65_351 sdsA1; SDS hydrolase SdsA1 K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D BD65_1302 endA; endonuclease-1 K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D BD65_64 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BD65_1683 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BD65_2473 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BD65_3006 PGAP1-like family protein K01175 ybfF; esterase [EC:3.1.-.-] D BD65_2770 alpha/beta hydrolase family protein K11750 frsA; esterase FrsA [EC:3.1.-.-] D BD65_2086 glycosyl hydrolases 8 family protein K20542 bcsZ; endoglucanase [EC:3.2.1.4] D BD65_239 phage lysozyme family protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D BD65_1874 phage lysozyme family protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D BD65_340 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BD65_2241 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D BD65_607 ydjC-like family protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105] D BD65_552 ASCH domain protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D BD65_1523 reactive intermediate/imine deaminase family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D BD65_1394 CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D BD65_2841 cof; HMP-PP phosphatase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-] D BD65_967 nudK; GDP-mannose pyrophosphatase nudK K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-] D BD65_51 maf; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D BD65_1974 AAA domain family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D BD65_349 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D BD65_308 fsa; fructose-6-phosphate aldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-] D BD65_2289 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D BD65_2430 hypothetical protein K01727 hysA; hyaluronate lyase [EC:4.2.2.1] D BD65_2433 chondroitin ABC endolyase 1 K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] D BD65_1210 csdA; cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D BD65_2428 nanM; N-acetylneuraminate epimerase K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D BD65_2330 mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D BD65_314 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D BD65_319 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D BD65_320 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D BD65_2758 nqrA; ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D BD65_2759 nqrB; ubiquinone oxidoreductase, Na(+)-translocating, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D BD65_2760 nqrC; ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D BD65_2761 nqrD; ubiquinone oxidoreductase, Na(+)-translocating, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D BD65_2762 nqrE; ubiquinone oxidoreductase, Na(+)-translocating, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D BD65_2763 nqrF; ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D BD65_1728 copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D BD65_1527 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D BD65_2603 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D BD65_2049 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D BD65_817 2Fe-2S iron-sulfur cluster binding domain protein K11107 yfaE; ferredoxin D BD65_313 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D BD65_312 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D BD65_321 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D BD65_1979 mioC; protein mioC K06205 mioC; MioC protein D BD65_1267 flavodoxin K03840 fldB; flavodoxin II D BD65_1047 nifU; nifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins D BD65_1531 cybC; soluble cytochrome b562 K15536 cybC; soluble cytochrome b562 D BD65_971 napD family protein K02570 napD; periplasmic nitrate reductase NapD D BD65_972 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D BD65_3003 flavodoxin K03839 fldA; flavodoxin I D BD65_968 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein K02569 napC; cytochrome c-type protein NapC C 99983 Lipid metabolism C 99984 Nucleotide metabolism D BD65_1139 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D BD65_944 cysZ; protein CysZ K06203 cysZ; CysZ protein D BD65_1175 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K08234 yaeR; glyoxylase I family protein D BD65_395 zinc carboxypeptidase family protein K14054 mpaA; murein peptide amidase A D BD65_1311 hypothetical protein K06997 yggS; PLP dependent protein D BD65_2364 serine dehydratase alpha chain family protein K26607 cyuA; putative L-cysteine desulfidase C 99986 Glycan metabolism D BD65_301 yciS; inner membrane protein yciS K08992 lapA; lipopolysaccharide assembly protein A D BD65_302 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B D BD65_2085 bacterial cellulose synthase subunit K20541 bcsB; cellulose synthase operon protein B C 99987 Cofactor metabolism D BD65_1760 tetratricopeptide repeat family protein K02498 hemY; HemY protein D BD65_1687 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D BD65_1688 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D BD65_1391 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D BD65_2367 hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D BD65_1961 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D BD65_1376 multicopper oxidase family protein K04753 sufI; suppressor of ftsI C 99999 Others D BD65_1477 yqjF; inner membrane protein yqjF K15977 K15977; putative oxidoreductase D BD65_982 phospholipase/Carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase D BD65_1154 acetyltransferase family protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D BD65_1534 hypothetical protein K03623 yhcO; ribonuclease inhibitor D BD65_604 cspG; cold shock-like protein CspG K03704 cspA; cold shock protein D BD65_724 cspC; cold shock-like protein CspC K03704 cspA; cold shock protein D BD65_1133 cspG; cold shock-like protein CspG K03704 cspA; cold shock protein D BD65_3250 cspE; RNA chaperone, negative regulator of cspA transcription K03704 cspA; cold shock protein D BD65_3251 cspE; RNA chaperone, negative regulator of cspA transcription K03704 cspA; cold shock protein D BD65_581 cspC; cold shock-like protein CspC K03704 cspA; cold shock protein D BD65_2954 cspE; RNA chaperone, negative regulator of cspA transcription K03704 cspA; cold shock protein D BD65_3221 cspD; cold shock domain protein CspD K03704 cspA; cold shock protein D BD65_1641 rsd; regulator of sigma D K07740 rsd; regulator of sigma D D BD65_2846 glnK; nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2 D BD65_2136 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D BD65_387 hslJ; heat shock protein hslJ K03668 hslJ; heat shock protein HslJ D BD65_3222 ATP-dependent Clp protease adaptor ClpS family protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D BD65_2831 tig; trigger factor K03545 tig; trigger factor D BD65_1552 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D BD65_2054 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D BD65_1102 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D BD65_1138 nrdH; glutaredoxin-like NrdH family protein K06191 nrdH; glutaredoxin-like protein NrdH D BD65_1793 sigma-54 interaction domain protein K07391 comM; magnesium chelatase family protein D BD65_1240 DSBA-like thioredoxin domain protein K07396 K07396; putative protein-disulfide isomerase D BD65_2179 yhfA; protein yhfA K07397 yhfA; putative redox protein D BD65_2129 nfuA; fe/S biogenesis protein nfuA K07400 nfuA; Fe/S biogenesis protein NfuA C 99976 Replication and repair D BD65_2849 methylated-DNA--[]-cysteine S-methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D BD65_1206 hypothetical protein K01146 xni; protein Xni D BD65_1410 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D BD65_1922 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D BD65_1690 rmuC family protein K09760 rmuC; DNA recombination protein RmuC D BD65_1482 hypothetical protein K07460 yraN; putative endonuclease D BD65_2368 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease D BD65_2242 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D BD65_358 gyrI-like small molecule binding domain protein K07470 sbmC; DNA gyrase inhibitor D BD65_3232 rarA; replication-associated recombination protein A K07478 ycaJ; putative ATPase D BD65_2244 NAD-dependent DNA ligase C4 zinc finger domain protein K07479 yrdD; putative DNA topoisomerase D BD65_1114 zinc-binding domain of primase-helicase family protein K06919 K06919; putative DNA primase/helicase D BD65_2061 transposase family protein K07483 K07483; transposase D BD65_2413 transposase family protein K07483 K07483; transposase D BD65_642 transposase family protein K07483 K07483; transposase D BD65_1798 transposase family protein K07483 K07483; transposase D BD65_2922 transposase family protein K07483 K07483; transposase D BD65_1427 transposase family protein K07483 K07483; transposase D BD65_31 putative transposase K07484 K07484; transposase D BD65_32 zinc-finger binding domain of transposase IS66 family protein K07484 K07484; transposase D BD65_34 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_630 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_1993 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_808 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_3153 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_3176 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_765 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D BD65_766 transposase, IS605 OrfB family K07496 K07496; putative transposase D BD65_3154 transposase, IS605 OrfB family K07496 K07496; putative transposase D BD65_3114 transposase, IS605 OrfB family K07496 K07496; putative transposase D BD65_2411 integrase core domain protein K07497 K07497; putative transposase D BD65_1117 integrase core domain protein K07497 K07497; putative transposase D BD65_1118 transposase family protein K07497 K07497; putative transposase D BD65_2879 putative transposase A K07497 K07497; putative transposase D BD65_2880 integrase core domain protein K07497 K07497; putative transposase D BD65_2927 transposase family protein K07497 K07497; putative transposase D BD65_2928 integrase core domain protein K07497 K07497; putative transposase D BD65_2410 transposase family protein K07497 K07497; putative transposase D BD65_2412 integrase core domain protein K07497 K07497; putative transposase D BD65_2426 integrase core domain protein K07497 K07497; putative transposase D BD65_2427 transposase family protein K07497 K07497; putative transposase D BD65_643 integrase core domain protein K07497 K07497; putative transposase D BD65_1437 integrase core domain protein K07497 K07497; putative transposase D BD65_1438 transposase family protein K07497 K07497; putative transposase D BD65_1441 transposase family protein K07497 K07497; putative transposase D BD65_2745 integrase core domain protein K07497 K07497; putative transposase D BD65_2746 transposase family protein K07497 K07497; putative transposase D BD65_1797 integrase core domain protein K07497 K07497; putative transposase D BD65_207 phage integrase family protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D BD65_406 pspA; phage shock protein A K03969 pspA; phage shock protein A D BD65_403 phage shock PspD family protein K03971 pspD; phage shock protein D D BD65_2868 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D BD65_1766 amino acid permease family protein K03293 TC.AAT; amino acid transporter, AAT family D BD65_37 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D BD65_158 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D BD65_184 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D BD65_416 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D BD65_2793 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D BD65_2474 nucleoside transporter, NupC family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D BD65_100 transporter, divalent anion:Na+ symporter family protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D BD65_2026 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein D BD65_3193 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein C 99978 Cell growth D BD65_275 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein D BD65_1731 dcrB; protein dcrB K27311 dcrB; inner membrane lipoprotein DcrB D BD65_2318 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D BD65_213 spoVR like family protein K06415 spoVR; stage V sporulation protein R D BD65_1909 peptidase M23 family protein K22719 envC; murein hydrolase activator C 99993 Cell motility D BD65_68 hypothetical protein K07337 K07337; penicillin-binding protein activator D BD65_16 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins D BD65_1203 syd; protein syd K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D BD65_2576 ampE; protein AmpE K03807 ampE; AmpE protein D BD65_520 proQ; proP effector K03607 proQ; ProP effector D BD65_2104 uspA; universal stress protein A K06149 uspA; universal stress protein A D BD65_720 universal stress family protein K14064 uspC; universal stress protein C D BD65_361 uspE; universal stress protein E K14055 uspE; universal stress protein E D BD65_1692 carbon starvation CstA family protein K06200 cstA; carbon starvation protein D BD65_1949 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D BD65_113 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D BD65_2982 ybeZ; phoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D BD65_223 hypothetical protein K07180 prkA; serine protein kinase D BD65_1395 bacterial SH3 domain protein K07184 ygiM; SH3 domain protein D BD65_2479 bacterial virulence factor hemolysin family protein K07186 smp; membrane protein D BD65_2820 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D BD65_3231 lolA; outer membrane lipocarrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D BD65_145 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D BD65_904 putative phospholipid-binding lipoprotein mlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA D BD65_1777 wzzE; lipopolysaccharide biosynthesis protein wzzE K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE D BD65_428 slyB; outer membrane lipoprotein slyB K06077 slyB; outer membrane lipoprotein SlyB D BD65_1186 outer membrane family protein K06142 hlpA; outer membrane protein D BD65_2640 lysM domain protein K06194 nlpD; lipoprotein NlpD D BD65_2360 nlpI; lipoprotein nlpI K05803 nlpI; lipoprotein NlpI D BD65_279 ompW family protein K07275 ompW; outer membrane protein D BD65_2728 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein D BD65_199 outer membrane lipo, Slp family protein K07285 slp; outer membrane lipoprotein D BD65_2829 hypothetical protein K07286 yajG; uncharacterized lipoprotein D BD65_3161 asmA family protein K07289 asmA; AsmA protein D BD65_2895 ybbJ; inner membrane protein ybbJ K07340 ybbJ; inner membrane protein D BD65_41 hypothetical protein K11744 tqsA; AI-2 transport protein TqsA D BD65_307 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB D BD65_909 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D BD65_906 cytochrome C biogenesis family protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D BD65_1033 helix-turn-helix family protein K15539 rodZ; cytoskeleton protein RodZ D BD65_1539 hypothetical protein K21695 aaeX; protein AaeX C 99994 Others D BD65_2000 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D BD65_2205 bfd; bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D BD65_2259 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D BD65_173 cutC family protein K06201 cutC; copper homeostasis protein D BD65_2379 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D BD65_2521 hypothetical protein K06195 apaG; ApaG protein D BD65_1755 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D BD65_468 hemS; hemin transport protein hemS K07225 hmuS; putative hemin transport protein D BD65_2856 ychN; protein ychN K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D BD65_872 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production D BD65_8 mce related family protein K06192 pqiB; paraquat-inducible protein B D BD65_166 hypothetical protein K03810 mviM; virulence factor D BD65_629 acetyltransferase family protein K02348 elaA; ElaA protein D BD65_1156 hypothetical protein K05811 yfiM; putative lipoprotein D BD65_2470 BON domain protein K04065 osmY; hyperosmotically inducible periplasmic protein D BD65_160 PHP domain protein K04477 ycdX; putative hydrolase D BD65_1094 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor D BD65_568 bacterial-like globin family protein K06886 glbN; hemoglobin D BD65_245 rssA; NTE family protein rssA K07001 K07001; NTE family protein D BD65_2609 erpA; iron-sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein D BD65_459 iron-sulfur cluster assembly accessory family protein K05997 sufA; Fe-S cluster assembly protein SufA D BD65_458 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D BD65_456 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D BD65_513 ydjM; inner membrane protein ydjM K07038 K07038; inner membrane protein D BD65_1061 hypothetical protein K07048 PTER; phosphotriesterase-related protein D BD65_1947 yihY; YihY family inner membrane domain protein K07058 K07058; membrane protein D BD65_2095 yhjD; inner membrane protein YhjD K07058 K07058; membrane protein D BD65_2262 hypothetical protein K07113 fxsA; UPF0716 protein FxsA D BD65_454 sufE; cysteine desulfuration protein sufE K02426 sufE; cysteine desulfuration protein SufE D BD65_1211 csdE; cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE D BD65_40 rhodanese-like domain protein K07146 K07146; UPF0176 protein D BD65_86 hflD; high frequency lysogenization protein hflD K07153 hflD; high frequency lysogenization protein D BD65_2195 slyX family protein K03745 slyX; SlyX protein D BD65_2243 hypothetical protein K03747 smg; Smg protein D BD65_2490 creA family protein K05805 creA; CreA protein D BD65_1301 sprT-like family protein K02742 sprT; SprT protein D BD65_873 sporulation related domain protein K03749 dedD; DedD protein D BD65_2159 sporulation related domain protein K03112 damX; DamX protein D BD65_3146 hypothetical protein K03748 sanA; SanA protein D BD65_876 hypothetical protein K03975 dedA; membrane-associated protein D BD65_522 yebS; inner membrane protein yebS K03808 pqiA; paraquat-inducible protein A D BD65_7 integral membrane, PqiA family protein K03808 pqiA; paraquat-inducible protein A D BD65_833 elaB; protein elaB K05594 elaB; ElaB protein D BD65_401 hypothetical protein K08990 ycjF; putative membrane protein D BD65_1724 hypothetical protein K08993 yhhL; putative membrane protein D BD65_244 SEC-C motif family protein K09858 K09858; SEC-C motif domain protein D BD65_1587 maltose operon periplasmic family protein K05775 malM; maltose operon periplasmic protein D BD65_1594 psiE; protein psiE K13256 psiE; protein PsiE D BD65_2784 aroM family protein K14591 aroM; protein AroM D BD65_916 phnA family protein K06193 phnA; protein PhnA C 99997 Function unknown D BD65_1092 ankyrin repeat family protein K06867 K06867; uncharacterized protein D BD65_2311 dienelactone hydrolase family protein K06889 K06889; uncharacterized protein D BD65_1125 X-Pro dipeptidyl-peptidase family protein K06889 K06889; uncharacterized protein D BD65_3087 inhibitor of apoptosis-promoting Bax1 family protein K06890 K06890; uncharacterized protein D BD65_1608 25-like lysozyme family protein K06903 W; Bacteriophage baseplate protein W D BD65_1868 25-like lysozyme family protein K06903 W; Bacteriophage baseplate protein W D BD65_1858 phage late control D family protein K06905 D; Bacteriophage probable baseplate hub protein D BD65_1859 phage P2 GpU family protein K06906 gpU; phage tail protein D BD65_1614 phage tail sheath family protein K06907 FI; Bacteriophage tail sheath protein D BD65_1615 phage tail sheath family protein K06907 FI; Bacteriophage tail sheath protein D BD65_1863 fi; major tail sheath protein K06907 FI; Bacteriophage tail sheath protein D BD65_1613 phage tail sheath family protein K06907 FI; Bacteriophage tail sheath protein D BD65_1862 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein D BD65_402 hypothetical protein K06918 K06918; uncharacterized protein D BD65_22 hypothetical protein K06929 K06929; uncharacterized protein D BD65_432 hypothetical protein K06938 K06938; uncharacterized protein D BD65_278 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein D BD65_775 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein D BD65_1415 dynamin family protein K06946 K06946; uncharacterized protein D BD65_1445 FAD dependent oxidoreductase family protein K06954 K06954; uncharacterized protein D BD65_514 dicarboxylate symporter family protein K06956 K06956; uncharacterized protein D BD65_71 hypothetical protein K07000 K07000; uncharacterized protein D BD65_1382 hypothetical protein K07000 K07000; uncharacterized protein D BD65_796 type I phosphodiesterase / nucleotide pyrophosphatase family protein K07014 K07014; uncharacterized protein D BD65_2186 alpha/beta hydrolase family protein K07019 K07019; uncharacterized protein D BD65_2500 yaaH; inner membrane protein yaaH K07034 K07034; uncharacterized protein D BD65_2193 hypothetical protein K07070 K07070; uncharacterized protein D BD65_865 rmlD substrate binding domain protein K07071 K07071; uncharacterized protein D BD65_894 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D BD65_862 yfcE; phosphodiesterase yfcE K07095 K07095; uncharacterized protein D BD65_2320 hypothetical protein K07109 K07109; uncharacterized protein D BD65_1298 sulfur transport family protein K07112 K07112; uncharacterized protein D BD65_1299 sulfur transport family protein K07112 K07112; uncharacterized protein D BD65_1481 lppC lipofamily protein K07121 K07121; uncharacterized protein D BD65_176 yecN; inner membrane protein yecN K07136 K07136; uncharacterized protein D BD65_1488 radical SAM superfamily protein K07139 K07139; uncharacterized protein D BD65_4 MOSC domain protein K07140 K07140; MOSC domain-containing protein D BD65_3140 hypothetical protein K07148 K07148; uncharacterized protein D BD65_2014 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D BD65_1314 hypothetical protein K09131 K09131; uncharacterized protein D BD65_2962 hypothetical protein K09158 K09158; uncharacterized protein D BD65_208 putative zinc-/iron-chelating domain protein K09160 K09160; uncharacterized protein D BD65_853 hypothetical protein K09161 K09161; uncharacterized protein D BD65_1446 hypothetical protein K09701 K09701; uncharacterized protein D BD65_965 hypothetical protein K09768 K09768; uncharacterized protein D BD65_263 yciI; protein yciI K09780 K09780; uncharacterized protein D BD65_222 hypothetical protein K09786 K09786; uncharacterized protein D BD65_2860 hypothetical protein K09790 K09790; uncharacterized protein D BD65_3252 trm112p-like family protein K09791 K09791; uncharacterized protein D BD65_1910 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein D BD65_1100 rnfH Ubiquitin family protein K09801 K09801; uncharacterized protein D BD65_753 hypothetical protein K09802 K09802; uncharacterized protein D BD65_1287 hypothetical protein K09807 K09807; uncharacterized protein D BD65_3217 hypothetical protein K09824 virK; uncharacterized protein D BD65_2765 hypothetical protein K05952 K05952; uncharacterized protein D BD65_9 hypothetical protein K09857 K09857; uncharacterized protein D BD65_2495 hypothetical protein K09861 K09861; uncharacterized protein D BD65_2567 hypothetical protein K09862 K09862; uncharacterized protein D BD65_1637 hypothetical protein K09891 K09891; uncharacterized protein D BD65_1954 der GTPase activator family protein K09894 K09894; uncharacterized protein D BD65_1281 yecA family protein K09895 K09895; uncharacterized protein D BD65_1959 yihD; protein yihD K09896 K09896; uncharacterized protein D BD65_1794 hypothetical protein K09897 K09897; uncharacterized protein D BD65_2185 hypothetical protein K09898 K09898; uncharacterized protein D BD65_854 hypothetical protein K09899 K09899; uncharacterized protein D BD65_258 hypothetical protein K09901 K09901; uncharacterized protein D BD65_205 hypothetical protein K09902 K09902; uncharacterized protein D BD65_795 hypothetical protein K09904 K09904; uncharacterized protein D BD65_172 yecM; protein yecM K09907 K09907; uncharacterized protein D BD65_1499 hypothetical protein K09908 K09908; uncharacterized protein D BD65_21 hypothetical protein K09909 K09909; uncharacterized protein D BD65_2585 hypothetical protein K09910 K09910; uncharacterized protein D BD65_13 organizer of macrodomain of Terminus of chromosome family protein K09911 K09911; uncharacterized protein D BD65_614 hypothetical protein K09912 K09912; uncharacterized protein D BD65_165 hypothetical protein K09915 K09915; uncharacterized protein D BD65_229 hypothetical protein K09916 K09916; uncharacterized protein D BD65_556 hypothetical protein K09917 K09917; uncharacterized protein D BD65_553 yebG family protein K09918 K09918; uncharacterized protein D BD65_1384 hypothetical protein K09920 K09920; uncharacterized protein D BD65_1752 hypothetical protein K09921 K09921; uncharacterized protein D BD65_1319 hypothetical protein K09923 K09923; uncharacterized protein D BD65_2298 hypothetical protein K09937 K09937; uncharacterized protein D BD65_1017 hypothetical protein K09946 K09946; uncharacterized protein D BD65_941 hypothetical protein K09954 K09954; uncharacterized protein D BD65_939 hypothetical protein K09962 K09962; uncharacterized protein D BD65_2892 traB family protein K09973 K09973; uncharacterized protein D BD65_131 hutD family protein K09975 K09975; uncharacterized protein D BD65_382 hypothetical protein K09978 K09978; uncharacterized protein D BD65_2373 hypothetical protein K09979 K09979; uncharacterized protein D BD65_262 transcription factor zinc-finger family protein K09981 K09981; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 19, 2024