+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Zobellella denitrificans</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      AN401_05095 deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        AN401_05905 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        AN401_15990 adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        AN401_09755 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      AN401_02165 7,8-dihydro-8-oxoguanine-triphosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      AN401_00690 deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
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A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      AN401_16145 6-O-methylguanine DNA methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      AN401_05095 deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        AN401_05905 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        AN401_15990 adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        AN401_00060 DNA-3-methyladenine glycosidase	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        AN401_00715 formamidopyrimidine-DNA glycosylase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        AN401_09755 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        AN401_13905 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
D      RecJ
E        AN401_02260 ssDNA exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        AN401_03815 ligA; aromatic ring-opening dioxygenase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        AN401_18735 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        AN401_16530 excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        AN401_10960 excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
E        AN401_05400 uvrC; excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C 
E        AN401_18790 uvrD; DNA-dependent helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AN401_12085 ATP-dependent exonuclease	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AN401_18735 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        AN401_03815 ligA; aromatic ring-opening dioxygenase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          AN401_01275 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          AN401_01280 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          AN401_17700 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          AN401_00645 rpoZ; DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          AN401_12230 transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        AN401_15655 DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS 
D      Molecular matchmaker
E        AN401_03610 DNA mismatch repair protein MutL	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
E        AN401_02525 hypothetical protein	K03573 mutH; DNA mismatch repair protein MutH 
D      DNA exonucleases
E        AN401_08160 exonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        AN401_12105 xseA; exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        AN401_13855 exodeoxyribonuclease VII small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        AN401_12795 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        AN401_00010 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        AN401_16115 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] 
E        AN401_13605 DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        AN401_08945 DNA polymerase III subunit delta'	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        AN401_04090 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AN401_14155 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AN401_14235 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AN401_08125 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        AN401_03815 ligA; aromatic ring-opening dioxygenase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        AN401_18790 uvrD; DNA-dependent helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AN401_12085 ATP-dependent exonuclease	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AN401_16520 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        AN401_15450 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        AN401_08425 exodeoxyribonuclease V subunit beta	K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] 
E        AN401_08420 exodeoxyribonuclease V subunit gamma	K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] 
E        AN401_08430 exodeoxyribonuclease V subunit alpha	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        AN401_15645 recombinase RecA	K03553 recA; recombination protein RecA 
E        AN401_06100 ATP-dependent DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        AN401_06105 ruvB; ATP-dependent DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        AN401_06095 crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        AN401_00970 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
E        AN401_06605 hypothetical protein	K02317 dnaT; DNA replication protein DnaT 
E        AN401_08160 exonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        AN401_17500 chromosome segregation protein SMC	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        AN401_17505 exonuclease SbcD	K03547 sbcD; DNA repair protein SbcD/Mre11 
D      RecFOR pathway proteins
E        AN401_15645 recombinase RecA	K03553 recA; recombination protein RecA 
E        AN401_03260 DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        AN401_00015 recF; recombination protein F	K03629 recF; DNA replication and repair protein RecF 
E        AN401_18560 ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        AN401_02260 ssDNA exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        AN401_02440 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        AN401_08135 recR; recombination protein RecR	K06187 recR; recombination protein RecR 
E        AN401_04925 recombination and repair protein	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        AN401_06210 recombination associated protein	K03554 rdgC; recombination associated protein RdgC 
E        AN401_06100 ATP-dependent DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        AN401_06105 ruvB; ATP-dependent DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        AN401_06095 crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
D      Other HR factor
E        AN401_13015 carboxylate--amine ligase	K19789 radD; DNA repair protein RadD 
D      Archaeal homologous recombinant proteins
E        AN401_17500 chromosome segregation protein SMC	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        AN401_17505 exonuclease SbcD	K03547 sbcD; DNA repair protein SbcD/Mre11 
E        AN401_15310 ATP-binding protein	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          AN401_11925 DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          AN401_00020 gyrB; DNA gyrase subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          AN401_11420 DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          AN401_15000 DNA-binding protein	K05787 hupA; DNA-binding protein HU-alpha 
F          AN401_05385 DNA-binding protein HU	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          AN401_02260 ssDNA exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          AN401_02440 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          AN401_08135 recR; recombination protein RecR	K06187 recR; recombination protein RecR 
F          AN401_03815 ligA; aromatic ring-opening dioxygenase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
F          AN401_04040 Fis family transcriptional regulator	K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein 
F          AN401_09295 ihfA; integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha 
F          AN401_09975 ihfB; integration host factor subunit beta	K05788 ihfB; integration host factor subunit beta 
E        Supressor
F          AN401_08160 exonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
F          AN401_02975 ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          AN401_18765 ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          AN401_16530 excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          AN401_10960 excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
F          AN401_09950 transcriptional regulator	K03746 hns; DNA-binding protein H-NS 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      AN401_13750 DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
C    Other SOS response factors
D      AN401_15645 recombinase RecA	K03553 recA; recombination protein RecA 
D      AN401_00845 LexA family transcriptional regulator	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      AN401_04925 recombination and repair protein	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      AN401_05300 DNA polymerase II	K02336 polB; DNA polymerase II [EC:2.7.7.7] 
D      AN401_16520 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      AN401_15640 RecX family transcriptional regulator	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
C    DNA helicases
D      AN401_17530 ATP-dependent DNA helicase Rep	K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] 
D      AN401_15265 DNA helicase IV	K03658 helD; DNA helicase IV [EC:5.6.2.4] 
D      AN401_09460 ATP-dependent helicase	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
D      AN401_09840 ATP-dependent DNA helicase DinG	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
C    Modulation of nucleotide pools
D      AN401_02165 7,8-dihydro-8-oxoguanine-triphosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      AN401_00690 deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      AN401_11940 ribonucleotide-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      AN401_00415 NrdJa	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      AN401_11945 ribonucleotide-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
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#Last updated: August 19, 2024