+F Repair protein KO #

  DNA Repair and Recombination Proteins - Zymobacter palmae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ZBT109_0204 methylated DNA-protein cysteine K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ZBT109_0348 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ZBT109_0994 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ZBT109_2628 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ZBT109_0974 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ZBT109_0915 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ZBT109_0085 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ZBT109_0497 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ZBT109_0204 methylated DNA-protein cysteine K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ZBT109_0348 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D ZBT109_2224 putative alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E ZBT109_0994 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ZBT109_0719 3-methyladenine DNA glycosylase/8-oxoguanine K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E ZBT109_2628 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ZBT109_0504 formamido pyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ZBT109_1471 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E ZBT109_0974 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ZBT109_0125 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E ZBT109_1960 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E ZBT109_1395 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E ZBT109_0874 deoxyinosine 3'endo nuclease K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ZBT109_0828 DNA polymerase I - 3'-5'exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ZBT109_0340 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E ZBT109_1472 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E ZBT109_0967 nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E ZBT109_0070 nuclease subunit of the excinuclease complex K05984 cho; excinuclease Cho [EC:3.1.25.-] E ZBT109_0077 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ZBT109_1971 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ZBT109_0828 DNA polymerase I - 3'-5'exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ZBT109_0300 DNA-directed RNA polymerase, beta subunit/140 kD K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ZBT109_0301 DNA-directed RNA polymerase, beta' subunit/160 kD K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ZBT109_0338 DNA-directed RNA polymerase, alpha subunit/40 kD K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ZBT109_2714 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ZBT109_1917 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ZBT109_1798 mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E ZBT109_1866 DNA mismatch repair enzyme K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E ZBT109_1758 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ZBT109_0186 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ZBT109_0748 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ZBT109_0002 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ZBT109_1834 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E ZBT109_1275 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ZBT109_1973 ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ZBT109_1310 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ZBT109_1311 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ZBT109_0628 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ZBT109_0077 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ZBT109_1971 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ZBT109_1682 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ZBT109_1241 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ZBT109_0341 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ZBT109_1679 site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E ZBT109_2604 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ZBT109_1016 ATP-dependent exoDNAse (exonuclease V) beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E ZBT109_1013 exonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E ZBT109_1017 ATP-dependent exoDNAse (exonuclease V), alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA E ZBT109_1457 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ZBT109_1456 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ZBT109_1458 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ZBT109_0775 primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E ZBT109_0876 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E ZBT109_0879 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA E ZBT109_2637 predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E ZBT109_0003 recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E ZBT109_2719 recG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ZBT109_1898 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E ZBT109_0630 recombinational DNA repair protein K06187 recR; recombination protein RecR E ZBT109_0239 ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) E ZBT109_1681 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E ZBT109_0926 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E ZBT109_1457 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ZBT109_1456 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ZBT109_1458 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E ZBT109_0989 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E ZBT109_1739 DNA or RNA helicases of superfamily II K19789 radD; DNA repair protein RadD E ZBT109_1738 DNA or RNA helicases of superfamily II K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E ZBT109_0876 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E ZBT109_0879 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ZBT109_0927 Type IIA topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ZBT109_0004 type IIA topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ZBT109_1933 topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ZBT109_0083 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F ZBT109_1728 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ZBT109_1683 recombinational DNA repair protein K07455 recT; recombination protein RecT F ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ZBT109_1898 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F ZBT109_0630 recombinational DNA repair protein K06187 recR; recombination protein RecR F ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F ZBT109_1435 factor for inversion stimulation Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F ZBT109_1097 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F ZBT109_0948 bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta E Supressor F ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F ZBT109_0340 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F ZBT109_1472 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ZBT109_1000 nucleotidyltransferase/DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA D ZBT109_1926 SOS-response transcriptional repressors K01356 lexA; repressor LexA [EC:3.4.21.88] D ZBT109_0239 ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) D ZBT109_1682 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ZBT109_1241 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ZBT109_0341 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ZBT109_1795 uncharacterized protein conserved in bacteria K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ZBT109_0132 superfamily I DNA and RNA helicases K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D ZBT109_1957 Rad3-related DNA helicases K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D ZBT109_2177 Lhr-like helicases K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D ZBT109_0915 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ZBT109_0085 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ZBT109_0497 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ZBT109_2656 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ZBT109_2655 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D ZBT109_1484 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D ZBT109_1485 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024