+F Repair protein KO
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DNA Repair and Recombination Proteins - Zymobacter palmae
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ZBT109_0204 methylated DNA-protein cysteine K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ZBT109_0348 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ZBT109_0994 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ZBT109_2628 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ZBT109_0974 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ZBT109_0915 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ZBT109_0085 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ZBT109_0497 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ZBT109_0204 methylated DNA-protein cysteine K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ZBT109_0348 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D ZBT109_2224 putative alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E ZBT109_0994 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ZBT109_0719 3-methyladenine DNA glycosylase/8-oxoguanine K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E ZBT109_2628 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ZBT109_0504 formamido pyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E ZBT109_1471 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E ZBT109_0974 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ZBT109_0125 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ZBT109_1960 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ZBT109_1395 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E ZBT109_0874 deoxyinosine 3'endo nuclease K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ZBT109_0828 DNA polymerase I - 3'-5'exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ZBT109_0340 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E ZBT109_1472 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E ZBT109_0967 nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
E ZBT109_0070 nuclease subunit of the excinuclease complex K05984 cho; excinuclease Cho [EC:3.1.25.-]
E ZBT109_0077 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ZBT109_1971 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ZBT109_0828 DNA polymerase I - 3'-5'exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ZBT109_0300 DNA-directed RNA polymerase, beta subunit/140 kD K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ZBT109_0301 DNA-directed RNA polymerase, beta' subunit/160 kD K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ZBT109_0338 DNA-directed RNA polymerase, alpha subunit/40 kD K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ZBT109_2714 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ZBT109_1917 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ZBT109_1798 mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E ZBT109_1866 DNA mismatch repair enzyme K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E ZBT109_1758 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ZBT109_0186 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ZBT109_0748 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ZBT109_0002 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ZBT109_1834 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E ZBT109_1275 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ZBT109_1973 ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ZBT109_1310 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ZBT109_1311 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ZBT109_0628 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ZBT109_0077 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ZBT109_1971 superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ZBT109_1682 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E ZBT109_1241 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E ZBT109_0341 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E ZBT109_1679 site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E ZBT109_2604 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ZBT109_1016 ATP-dependent exoDNAse (exonuclease V) beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E ZBT109_1013 exonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E ZBT109_1017 ATP-dependent exoDNAse (exonuclease V), alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA
E ZBT109_1457 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ZBT109_1456 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ZBT109_1458 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ZBT109_0775 primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E ZBT109_0876 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E ZBT109_0879 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA
E ZBT109_2637 predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
E ZBT109_0003 recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF
E ZBT109_2719 recG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ZBT109_1898 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E ZBT109_0630 recombinational DNA repair protein K06187 recR; recombination protein RecR
E ZBT109_0239 ATPase K03631 recN; DNA repair protein RecN (Recombination protein N)
E ZBT109_1681 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E ZBT109_0926 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E ZBT109_1457 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ZBT109_1456 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ZBT109_1458 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E ZBT109_0989 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E ZBT109_1739 DNA or RNA helicases of superfamily II K19789 radD; DNA repair protein RadD
E ZBT109_1738 DNA or RNA helicases of superfamily II K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E ZBT109_0876 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E ZBT109_0879 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ZBT109_0927 Type IIA topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ZBT109_0004 type IIA topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ZBT109_1933 topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ZBT109_0083 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
F ZBT109_1728 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ZBT109_1683 recombinational DNA repair protein K07455 recT; recombination protein RecT
F ZBT109_0461 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ZBT109_1898 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F ZBT109_0630 recombinational DNA repair protein K06187 recR; recombination protein RecR
F ZBT109_1772 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F ZBT109_1435 factor for inversion stimulation Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ZBT109_1097 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F ZBT109_0948 bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F ZBT109_0441 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F ZBT109_0340 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F ZBT109_1472 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ZBT109_1000 nucleotidyltransferase/DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D ZBT109_1796 RecA/RadA recombinase K03553 recA; recombination protein RecA
D ZBT109_1926 SOS-response transcriptional repressors K01356 lexA; repressor LexA [EC:3.4.21.88]
D ZBT109_0239 ATPase K03631 recN; DNA repair protein RecN (Recombination protein N)
D ZBT109_1682 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ZBT109_1241 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ZBT109_0341 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ZBT109_1795 uncharacterized protein conserved in bacteria K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D ZBT109_0132 superfamily I DNA and RNA helicases K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D ZBT109_1957 Rad3-related DNA helicases K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D ZBT109_2177 Lhr-like helicases K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D ZBT109_0915 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ZBT109_0085 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ZBT109_0497 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ZBT109_2656 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ZBT109_2655 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ZBT109_1484 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ZBT109_1485 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024