+E Ribosome biogenesis
#
Ribosome Biogenesis
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D K14564 NOP56; nucleolar protein 56
D K14565 NOP58; nucleolar protein 58
D K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D K11131 DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D K11128 GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1
D K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2
D K11130 NOP10, NOLA3; H/ACA ribonucleoprotein complex subunit 3
D K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5
D K14545 RRP7; ribosomal RNA-processing protein 7
D K14558 PWP2, UTP1; periodic tryptophan protein 2
D K14766 NOP14, UTP2; nucleolar protein 14
D K14767 UTP3, SAS10; U3 small nucleolar RNA-associated protein 3
D K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4
D K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5
D K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D K14768 UTP7, WDR46; U3 small nucleolar RNA-associated protein 7
D K14547 UTP8; U3 small nucleolar RNA-associated protein 8
D K14551 UTP9; U3 small nucleolar RNA-associated protein 9
D K14550 UTP10, HEATR1; U3 small nucleolar RNA-associated protein 10
D K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12
D K14555 UTP13, TBL3; U3 small nucleolar RNA-associated protein 13
D K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D K14770 BUD21, UTP16; U3 small nucleolar RNA-associated protein 16
D K14552 NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D K14771 NOC4, UTP19; U3 small nucleolar RNA-associated protein 19
D K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D K14554 UTP21, WDR36; U3 small nucleolar RNA-associated protein 21
D K14544 UTP22, NOL6; U3 small nucleolar RNA-associated protein 22
D K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D K14566 UTP24, FCF1; U3 small nucleolar RNA-associated protein 24
D K14774 UTP25, DEF; U3 small nucleolar RNA-associated protein 25
D K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30
C Helicases
D K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D K14779 DDX52, ROK1; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D K12820 DHX15, PRP43; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D K14780 DHX37, DHR1; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D K14781 DHR2; ATP-dependent RNA helicase DHR2 [EC:5.6.2.6]
D K13025 EIF4A3, FAL1; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D K03685 rnc, DROSHA, RNT1; ribonuclease III [EC:3.1.26.3]
D K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-]
D K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D K14782 AATF, BFR2; protein AATF/BFR2
D K14783 CIC1, NSA3; proteasome-interacting protein CIC1
D K14784 CMS1; protein CMS1
D K14568 EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D K14785 ESF2, ABT1; ESF2/ABP1 family protein
D K14786 KRI1; protein KRI1
D K06961 KRR1; ribosomal RNA assembly protein
D K14787 MRD1, RBM19; multiple RNA-binding domain-containing protein 1
D K14521 NAT10, KRE33; N-acetyltransferase 10 [EC:2.3.1.-]
D K11294 NCL, NSR1; nucleolin
D K14788 NOL10, ENP2; ribosome biogenesis protein ENP2
D K14789 NOP6; nucleolar protein 6
D K14790 NOP9; nucleolar protein 9
D K11135 PINX1; Pin2-interacting protein X1
D K14791 PWP1; periodic tryptophan protein 1
D K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D K14792 RRP5, PDCD11; rRNA biogenesis protein RRP5
D K14793 RRP9; ribosomal RNA-processing protein 9
D K14794 RRP12; ribosomal RNA-processing protein 12
D K14795 RRP36; ribosomal RNA-processing protein 36
D K14562 TCOF1; Treacher Collins syndrome protein
D K14796 TMA23; nucleolar protein TMA23
D K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
D K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D K14797 ENP1, BYSL; essential nuclear protein 1
D K14798 LTV1; protein LTV1
D K11883 NOB1; RNA-binding protein NOB1
D K11884 PNO1, DIM2; RNA-binding protein PNO1
D K07936 RAN; GTP-binding nuclear protein Ran
D K18532 AK6, FAP7; adenylate kinase [EC:2.7.4.3]
D K14799 TSR1; pre-rRNA-processing protein TSR1
D K14800 TSR2; pre-rRNA-processing protein TSR2
D K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D K14801 TSR4; pre-rRNA-processing protein TSR4
D K26536 RPS19BP1; active regulator of SIRT1
D K14290 XPO1, CRM1; exportin-1
D K14293 KPNB1, IPO1; importin subunit beta-1
D K18752 TNPO1, IPO2, KPNB2; transportin-1
D K20221 IPO4, RANBP4; importin-4
D K20222 IPO5, KPNB3, RANBP5; importin-5
D K20223 IPO7, RANBP7; importin-7
D K20224 IPO9, RANBP9; importin-9
C Other pre-40S particles
D K14802 DRS2, ATP8A; phospholipid-transporting ATPase [EC:7.6.2.1]
D K03245 EIF3J; translation initiation factor 3 subunit J
D K14803 PTC2_3; protein phosphatase PTC2/3 [EC:3.1.3.16]
D K14804 SLX9; ribosome biogenesis protein SLX9
D K06174 ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D K14806 DDX31, DBP7; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D K14807 DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:5.6.2.7]
D K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D K14538 NUG1, GNL3; nuclear GTP-binding protein
D K14537 NUG2, GNL2; nuclear GTP-binding protein
D K06943 NOG1; nucleolar GTP-binding protein
D K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D K14812 NGL2; RNA exonuclease NGL2 [EC:3.1.-.-]
D K13288 orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]
D K14570 REX1, REXO1, REXO5, RNH70; RNA exonuclease [EC:3.1.-.-]
D K12618 XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D K12619 XRN2, RAT1; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E K14522 POP3; ribonuclease P/MRP protein subunit POP3 [EC:3.1.26.5]
E K03538 POP4, RPP29; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E K14524 POP6; ribonuclease P/MRP protein subunit POP6 [EC:3.1.26.5]
E K14526 POP7, RPP2; ribonuclease P/MRP protein subunit POP7 [EC:3.1.26.5]
E K14528 POP8; ribonuclease P/MRP protein subunit POP8 [EC:3.1.26.5]
E K03539 RPP1, RPP30; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E K14527 RPP20, POP7; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
E K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
E K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
E K14532 RMP1; ribonuclease MRP protein subunit RMP1
E K14531 SNM1; ribonuclease MRP protein subunit SNM1
C Kinases
D K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
D K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D K14813 ARX1; metalloprotease ARX1 [EC:3.-.-.-]
D K14814 ALB1; ribosome biogenesis protein ALB1
D K09506 DNAJA5; DnaJ homolog subfamily A member 5
D K03264 EIF6; translation initiation factor 6
D K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D K26598 HSPA2; heat shock 70kDa protein 2
D K14815 MRT4; mRNA turnover protein 4
D K14543 MTR2; mRNA transport regulator MTR2
D K07562 NMD3; 60S ribosomal export protein NMD3
D K14284 NXF, TAP, MEX67; nuclear RNA export factor
D K14285 NXT1_2, P15; NTF2-related export protein 1/2
D K07936 RAN; GTP-binding nuclear protein Ran
D K14816 REI1; pre-60S factor REI1
D K14817 LOC1; 60S ribosomal subunit assembly/export protein LOC1
D K14574 SDO1, SBDS; ribosome maturation protein SDO1
D K14575 AFG2, DRG1, SPATA5; AAA family ATPase
D K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10]
D K26052 CINP; cyclin-dependent kinase 2-interacting protein
D K26053 C1ORF109; ribosome biogenesis protein C1orf109
D K14818 SQT1; ribosome assembly protein SQT1
D K14290 XPO1, CRM1; exportin-1
D K14293 KPNB1, IPO1; importin subunit beta-1
D K18752 TNPO1, IPO2, KPNB2; transportin-1
D K20221 IPO4, RANBP4; importin-4
D K20222 IPO5, KPNB3, RANBP5; importin-5
D K20223 IPO7, RANBP7; importin-7
D K20224 IPO9, RANBP9; importin-9
D K14819 DUSP12, YVH1; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1
D K14829 IPI3; pre-rRNA-processing protein IPI3
D K16912 LAS1; ribosomal biogenesis protein LAS1
D K16913 PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1
D K08593 SENP3; sentrin-specific protease 3 [EC:3.4.22.68]
C Ribosome quality control proteins
D K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D K24970 TCF25, RQC1; transcription factor 25
D K24971 NEMF, RQC2; nuclear export mediator factor NEMF
D K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase
D K14015 NPLOC4, NPL4; nuclear protein localization protein 4
D K14016 UFD1; ubiquitin fusion degradation protein 1
D K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D K26089 ANKZF1, VMS1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D K14820 BRX1, BRIX1; ribosome biogenesis protein BRX1
D K14821 BUD20; bud site selection protein 20
D K14783 CIC1, NSA3; proteasome-interacting protein CIC1
D K14822 CGR1; rRNA-processing protein CGR1
D K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2
D K14824 ERB1, BOP1; ribosome biogenesis protein ERB1
D K14825 TMED5, ERP2, ERP4; p24 family protein gamma-2
D K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8]
D K14830 MAK11, PAK1IP1; protein MAK11
D K14831 MAK16; protein MAK16
D K14832 MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21
D K14572 MDN1, REA1; midasin
D K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D K14833 NOC2; nucleolar complex protein 2
D K14834 NOC3; nucleolar complex protein 3
D K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D K14573 NOP4, RBM28; nucleolar protein 4
D K14836 NOP8, NOL8, NOP132; nucleolar protein 8
D K14837 NOP12; nucleolar protein 12
D K14838 NOP15; nucleolar protein 15
D K14839 NOP16; nucleolar protein 16
D K14840 NOP53, GLTSCR2; nucleolar protein 53
D K14841 NSA1, WDR74; ribosome biogenesis protein NSA1
D K14842 NSA2; ribosome biogenesis protein NSA2
D K14843 PES1, NOP7; pescadillo
D K14844 PUF6; pumilio homology domain family member 6
D K14791 PWP1; periodic tryptophan protein 1
D K14845 RAI1, DOM3Z; RAT1-interacting protein
D K16914 RIOX1, NO66; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D K21760 RIOX2, MINA; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66]
D K14828 RIX1, IPI2; pre-rRNA-processing protein RIX1
D K14571 RIX7, NVL; ribosome biogenesis ATPase
D K14846 RPF1; ribosome production factor 1
D K14847 RPF2; ribosome production factor 2
D K14848 RRB1, GRWD1; ribosome assembly protein RRB1
D K14849 RRP1; ribosomal RNA-processing protein 1
D K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D K14794 RRP12; ribosomal RNA-processing protein 12
D K14851 RRP17, NOL12; ribosomal RNA-processing protein 17
D K14852 RRS1; regulator of ribosome biosynthesis
D K14853 RSA1; ribosome assembly protein 1
D K14854 RSA3; ribosome assembly protein 3
D K14855 RSA4, NLE1; ribosome assembly protein 4
D K14856 SDA1, SDAD1; protein SDA1
D K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D K14858 SRD1; pre-rRNA-processing protein SRD1
D K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D K14860 TMA16; translation machinery-associated protein 16
D K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D K14863 WDR12, YTM1; ribosome biogenesis protein
D K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
D K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C K15262 BCP1, BCCIP; protein BCP1
C K15263 LYER; cell growth-regulating nucleolar protein
C K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C K15507 MRM1, PET56; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C K15508 MRM2; 21S rRNA (uridine2791-2'-O)-methyltransferase [EC:2.1.1.168]
C K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C K19307 BMT5; 25S rRNA (uracil2634-N3)-methyltransferase [EC:2.1.1.313]
C K19308 BMT6; 25S rRNA (uracil2843-N3)-methyltransferase [EC:2.1.1.312]
C K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
C K12579 ISG20; interferon-stimulated gene 20 kDa protein [EC:3.1.13.1]
C K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2 [EC:3.1.-.-]
C K10277 KDM8, JMJD5; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-]
C K23310 PHF6; PHD finger protein 6
C K24445 SLFN14; protein SLFN14 [EC:3.1.-.-]
C K03595 era, ERAL1; GTPase
C K26142 NOPCHAP1; NOP protein chaperone 1
C K26736 PA2G4, EBP1; ERBB-3 binding protein
C K19828 MTG1; mitochondrial GTPase 1
C K03979 obgE, cgtA, MTG2; GTPase [EC:3.6.5.-]
C K19829 GEP3, MTG3; genetic interactor of prohibitins 3, mitochondrial
C K15265 PUS5; 21S rRNA pseudouridine2819 synthase [EC:5.4.99.43]
C K15267 MTEF1; mitochondrial transcription factor 1
C K18803 HPM1; protein-histidine N-methyltransferase [EC:2.1.1.85]
C K19832 NOA1; nitric oxide-associated protein 1
C K13427 NOA1; nitric-oxide synthase, plant [EC:1.14.13.39]
C K27349 RKM2; ribosomal lysine N-methyltransferase 2 [EC:2.1.1.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D K14564 NOP56; nucleolar protein 56
D K04795 flpA; fibrillarin-like pre-rRNA processing protein
D K02936 RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D K11131 DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D K07569 gar1; RNA-binding protein
D K11130 NOP10, NOLA3; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C K06204 dksA; RNA polymerase-binding transcription factor
C K02600 nusA; transcription termination/antitermination protein NusA
C K03625 nusB; transcription antitermination protein NusB
C K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D K03501 gidB, rsmG; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D K18845 rmt, armA; 16S rRNA (guanine(1405)-N(7))-methyltransferase [EC:2.1.1.179]
D K18846 npmA; 16S rRNA (adenine(1408)-N(1))-methyltransferase [EC:2.1.1.180]
D K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D K14336 rlmA2; 23S rRNA (guanine748-N1)-methyltransferase [EC:2.1.1.188]
D K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D K02427 rlmE, rrmJ, ftsJ; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264]
D K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D K05926 nhs; 23S rRNA (adenosine1067-2'-O)-methyltransferase [EC:2.1.1.230]
D K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D K00561 ermC, ermA; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D K21514 aviRb; 23S rRNA (uridine2479-2'-O)-methyltransferase [EC:2.1.1.208]
D K21515 aviRa; 23S rRNA (guanine2535-N1)-methyltransferase [EC:2.1.1.209]
D K03214 yfiF, trmG; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C K02860 rimM; 16S rRNA processing protein RimM
C K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C K03685 rnc, DROSHA, RNT1; ribonuclease III [EC:3.1.26.3]
C K08300 rne; ribonuclease E [EC:3.1.26.12]
C K08301 rng, cafA; ribonuclease G [EC:3.1.26.-]
C K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C K05592 deaD, cshA; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
C K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C K03595 era, ERAL1; GTPase
C K06949 rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C K03977 engA, der; GTPase
C K03979 obgE, cgtA, MTG2; GTPase [EC:3.6.5.-]
C K14540 rbgA; ribosome biogenesis GTPase A
C K03665 hflX; GTPase
C K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C K07566 tsaC, rimN, SUA5, YRDC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C K02834 rbfA; ribosome-binding factor A
C K09748 rimP; ribosome maturation factor RimP
C K14761 rlbA, ybcJ; ribosome-associated protein
C K09710 ybeB; ribosome-associated protein
C K07042 ybeY, yqfG; probable rRNA maturation factor
C K07574 yhbY; RNA-binding protein
C K14762 yibL; ribosome-associated protein
C K09889 yjgA; ribosome-associated protein
C K03812 rmf; ribosome modulation factor
C K05808 hpf; ribosome hibernation promoting factor
C K05809 raiA; ribosome-associated inhibitor A
C K02972 sra; stationary-phase-induced ribosome-associated protein
C K06942 ychF; ribosome-binding ATPase
C K07040 yceD, ylbN; DUF177 domain-containing protein
C K22469 fau-1, aubA; probable ribonuclease FAU-1 [EC:3.1.26.-]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
D K14483 SNORD3, U3, SNR17; small nucleolar RNA SNORD3
D K14907 SNORD12; small nucleolar RNA SNORD12
D K26291 SNORD13, U13; small nucleolar RNA SNORD13
D K14865 SNORD14, U14, SNR128; small nucleolar RNA SNORD14
D K14921 SNORD15, U15; small nucleolar RNA SNORD15
D K26292 SNORD17; small nucleolar RNA SNORD17
D K14866 SNORD18, U18, SNR18; small nucleolar RNA SNORD18
D K26293 SNORD21, U21; small nucleolar RNA SNORD21
D K26294 SNORD22, U22; small nucleolar RNA SNORD22
D K26295 SNORD23; small nucleolar RNA SNORD23
D K14867 SNORD24, U24, SNR24; small nucleolar RNA SNORD24
D K14881 SNORD32_33, U32_33, SNR55; small nucleolar RNA SNORD32/33
D K14888 SNORD34, U34, SNR62; small nucleolar RNA SNORD34
D K14899 SNORD35, U35; small nucleolar RNA SNORD35
D K14874 SNORD36, U36, SNR47; small nucleolar RNA SNORD36
D K14887 SNORD38, U38, SNR61; small nucleolar RNA SNORD38
D K14880 SNORD59, U59, SNR54; small nucleolar RNA SNORD59
D K14875 SNORD60, U60; small nucleolar RNA SNORD60
D K14919 SNORD62, U62; small nucleolar RNA SNORD62
D K14917 SNORD88; small nucleolar RNA SNORD88
D K14904 SNORD104, U104; small nucleolar RNA SNORD104
D K27110 SNORD118; small nucleolar RNA SNORD118
D K14878 SNR52; small nucleolar RNA SNR52
D K26461 SNR190; small nucleolar RNA SNR190
C SnoRNAs act as guides for 2'-O-ribose methylation
D K14869 SNORD1, SNR38; small nucleolar RNA SNORD1
D K14870 SNORD2, SNR39B; small nucleolar RNA SNORD2
D K27197 SNORD4; small nucleolar RNA SNORD4
D K27198 SNORD5; small nucleolar RNA SNORD5
D K27199 SNORD6; small nucleolar RNA SNORD6
D K14896 SNORD11, SNR70; small nucleolar RNA SNORD11
D K14906 SNORD16, U16; small nucleolar RNA SNORD16
D K14934 SNORD19; small nucleolar RNA SNORD19
D K27207 SNORD20, U20; small nucleolar RNA SNORD20
D K14882 SNORD25, U25, SNR56; small nucleolar RNA SNORD25
D K26296 SNORD26, U26; small nucleolar RNA SNORD26
D K14900 SNORD27, U27, SNR74; small nucleolar RNA SNORD27
D K26297 SNORD28, U28; small nucleolar RNA SNORD28
D K14895 SNORD29, U29; small nucleolar RNA SNORD29
D K26298 SNORD30, U30; small nucleolar RNA SNORD30
D K14893 SNORD31, U31, SNR67; small nucleolar RNA SNORD31
D K27210 SNORD37, U37; small nucleolar RNA SNORD37
D K26299 SNORD41, U41; small nucleolar RNA SNORD41
D K14892 SNORD42, U42, SNR66; small nucleolar RNA SNORD42
D K26300 SNORD43, U43; small nucleolar RNA SNORD43
D K26301 SNORD44, U44; small nucleolar RNA SNORD44
D K26302 SNORD45, U45; small nucleolar RNA SNORD45
D K14889 SNORD46, U46; small nucleolar RNA SNORD46
D K14920 SNORD47, U47; small nucleolar RNA SNORD47
D K26303 SNORD48, U48; small nucleolar RNA SNORD48
D K26304 SNORD49, U49; small nucleolar RNA SNORD49
D K26305 SNORD50, U50; small nucleolar RNA SNORD50
D K14885 SNORD51, U51, SNR39_59; small nucleolar RNA SNORD51
D K14884 SNORD52, U52; small nucleolar RNA SNORD52
D K26306 SNORD53_92; small nucleolar RNA SNORD53/92
D K26307 SNORD54, U54; small nucleolar RNA SNORD54
D K26308 SNORD55, U55; small nucleolar RNA SNORD55
D K26309 SNORD56, U56; small nucleolar RNA SNORD56
D K14877 SNORD57, U57, SNR51; small nucleolar RNA SNORD57
D K26310 SNORD58, U58; small nucleolar RNA SNORD58
D K26311 SNORD61, U61; small nucleolar RNA SNORD61
D K27111 SNORD63, U63; small nucleolar RNA SNORD63
D K27112 SNORD64; small nucleolar RNA SNORD64
D K14903 SNORD65, SNR77; small nucleolar RNA SNORD65
D K27211 SNORD66; small nucleolar RNA SNORD66
D K27212 SNORD67; small nucleolar RNA SNORD67
D K27213 SNORD68; small nucleolar RNA SNORD68
D K27214 SNORD69; small nucleolar RNA SNORD69
D K27215 SNORD70; small nucleolar RNA SNORD70
D K27216 SNORD71; small nucleolar RNA SNORD71
D K27181 SNORD72; small nucleolar RNA SNORD72
D K27208 SNORD73, U73; small nucleolar RNA SNORD73
D K14890 SNORD74, U74, SNR64; small nucleolar RNA SNORD74
D K26312 SNORD75, U75; small nucleolar RNA SNORD75
D K14886 SNORD77_80, U77_80, SNR60; small nucleolar RNA SNORD77/80
D K26313 SNORD78, U78; small nucleolar RNA SNORD78
D K26314 SNORD79, U79; small nucleolar RNA SNORD79
D K26315 SNORD81, U81; small nucleolar RNA SNORD81
D K27133 SNORD82, U82; small nucleolar RNA SNORD82
D K27134 SNORD83, U83; small nucleolar RNA SNORD83
D K27176 SNORD86, U86; small nucleolar RNA SNORD86
D K27177 SNORD87 U87; small nucleolar RNA SNORD87
D K27178 SNORD89; small nucleolar RNA SNORD89
D K26474 SNORD90; small nucleolar RNA SNORD90
D K27113 SNORD91; small nucleolar RNA SNORD91
D K27114 SNORD93; small nucleolar RNA SNORD93
D K27115 SNORD94, U94; small nucleolar RNA SNORD94
D K27116 SNORD95, U95; small nucleolar RNA SNORD95
D K27117 SNORD96, U96; small nucleolar RNA SNORD96
D K27118 SNORD97, U97; small nucleolar RNA SNORD97
D K27119 SNORD98; small nucleolar RNA SNORD98
D K27120 SNORD99; small nucleolar RNA SNORD99
D K27121 SNORD100; small nucleolar RNA SNORD100
D K27122 SNORD101, U101, snoR60; small nucleolar RNA SNORD101
D K27123 SNORD102; small nucleolar RNA SNORD102
D K27124 SNORD103, U103; small nucleolar RNA SNORD103
D K27125 SNORD105, U105; small nucleolar RNA SNORD105
D K27126 SNORD107; small nucleolar RNA SNORD107
D K27127 SNORD108; small nucleolar RNA SNORD108
D K27128 SNORD109; small nucleolar RNA SNORD109
D K27129 SNORD110, snoR14; small nucleolar RNA SNORD110
D K27130 SNORD111; small nucleolar RNA SNORD111
D K27131 SNORD112; small nucleolar RNA SNORD112
D K27132 SNORD113_114; small nucleolar RNA SNORD113/114
D K27135 SNORD116; small nucleolar RNA SNORD116
D K27136 SNORD117, SNORD83; small nucleolar RNA SNORD117
D K27137 SNORD121; small nucleolar RNA SNORD121
D K27138 SNORD123; small nucleolar RNA SNORD123
D K27139 SNORD124; small nucleolar RNA SNORD124
D K27140 SNORD125; small nucleolar RNA SNORD125
D K27141 SNORD126; small nucleolar RNA SNORD126
D K27142 SNORD127; small nucleolar RNA SNORD127
D K14868 SNR13; small nucleolar RNA SNR13
D K14871 SNR40; small nucleolar RNA SNR40
D K14872 SNR41; small nucleolar RNA SNR41
D K14873 SNR45; small nucleolar RNA SNR45
D K26462 SNR48; small nucleolar RNA SNR48
D K14876 SNR50; small nucleolar RNA SNR50
D K14883 SNR57; small nucleolar RNA SNR57
D K26475 SNR63; small nucleolar RNA SNR63
D K14891 SNR65; small nucleolar RNA SNR65
D K14894 SNR68; small nucleolar RNA SNR68
D K26476 SNR69; small nucleolar RNA SNR69
D K14897 SNR71; small nucleolar RNA SNR71
D K14898 SNR72; small nucleolar RNA SNR72
D K26463 SNR73; small nucleolar RNA SNR73
D K14901 SNR75; small nucleolar RNA SNR75
D K14902 SNR76; small nucleolar RNA SNR76
D K26464 SNR78; small nucleolar RNA SNR78
D K14905 SNR79; small nucleolar RNA SNR79
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
D K14908 SNORA73, U17; small nucleolar RNA SNORA73
D K14923 SNORA5, ACA5; small nucleolar RNA SNORA5
D K14925 SNORA11; small nucleolar RNA SNORA11
D K14927 SNORA16; small nucleolar RNA SNORA16
D K14928 SNORA50_76; small nucleolar RNA SNORA50/76
D K14929 SNORA53, ACA53; small nucleolar RNA SNORA53
D K14931 SNORA54, ACA54; small nucleolar RNA SNORA54
D K14932 SNORA74, U19; small nucleolar RNA SNORA74
D K14935 SNORA77, ACA63; small nucleolar RNA SNORA77
D K14936 SNORA78, ACA64; small nucleolar RNA SNORA78
D K26319 SNORA79, ACA65; small nucleolar RNA SNORA79
D K26320 SNORA80, ACA67; small nucleolar RNA SNORA80
C SnoRNAs act as guides for pseudouridynation
D K14918 SNORA1, ACA1; small nucleolar RNA SNORA1
D K14922 SNORA2_34, ACA2_34; small nucleolar RNA SNORA2/34
D K14914 SNORA3, ACA3; small nucleolar RNA SNORA3
D K26321 SNORA4, ACA4; small nucleolar RNA SNORA4
D K14910 SNORA6_62; small nucleolar RNA SNORA6/62
D K26322 SNORA7, ACA7; small nucleolar RNA SNORA7
D K26323 SNORA8, ACA8; small nucleolar RNA SNORA8
D K26324 SNORA9, ACA9; small nucleolar RNA SNORA9
D K14930 SNORA13, ACA13; small nucleolar RNA SNORA13
D K14916 SNORA14, ACA14, SNR32; small nucleolar RNA SNORA14
D K26325 SNORA15, ACA15; small nucleolar RNA SNORA15
D K26326 SNORA17_43, ACA17_43; small nucleolar RNA SNORA17/43
D K26327 SNORA18, ACA18; small nucleolar RNA SNORA18
D K26328 SNORA19, ACA19; small nucleolar RNA SNORA19
D K14933 SNORA20, ACA20; small nucleolar RNA SNORA20
D K14909 SNORA21, ACA21; small nucleolar RNA SNORA21
D K26329 SNORA22, ACA22; small nucleolar RNA SNORA22
D K26330 SNORA23, ACA23; small nucleolar RNA SNORA23
D K26331 SNORA24, ACA24; small nucleolar RNA SNORA24
D K26332 SNORA25, ACA25; small nucleolar RNA SNORA25
D K26333 SNORA27, ACA27; small nucleolar RNA SNORA27
D K26334 SNORA28, ACA28; small nucleolar RNA SNORA28
D K26335 SNORA30_37, ACA30_37; small nucleolar RNA SNORA30/37
D K26336 SNORA31, ACA31; small nucleolar RNA SNORA31
D K26337 SNORA32, ACA32; small nucleolar RNA SNORA32
D K26338 SNORA36, ACA36; small nucleolar RNA SNORA36
D K14926 SNORA40, ACA40, SNR49; small nucleolar RNA SNORA40
D K26339 SNORA41, ACA41; small nucleolar RNA SNORA41
D K26340 SNORA44, ACA44; small nucleolar RNA SNORA44
D K26341 SNORA46, ACA46; small nucleolar RNA SNORA46
D K27149 SNORA47; small nucleolar RNA SNORA47
D K26342 SNORA48, ACA48; small nucleolar RNA SNORA48
D K14911 SNORA52, ACA52; small nucleolar RNA SNORA52
D K27150 SNORA55, ACA55; small nucleolar RNA SNORA55
D K14912 SNORA56, ACA56; small nucleolar RNA SNORA56
D K26343 SNORA58, ACA58; small nucleolar RNA SNORA58
D K26344 SNORA60_71, ACA60, U71; small nucleolar RNA SNORA60/71
D K26345 SNORA61, ACA61; small nucleolar RNA SNORA61
D K14924 SNORA10_64; small nucleolar RNA SNORA10/64
D K26358 SNORA66, U66; small nucleolar RNA SNORA66
D K26359 SNORA67, U67; small nucleolar RNA SNORA67
D K26360 SNORA68, U68; small nucleolar RNA SNORA68
D K26361 SNORA69, U69; small nucleolar RNA SNORA69
D K14879 SNORA70, U70; small nucleolar RNA SNORA70
D K26362 SNORA72, U72; small nucleolar RNA SNORA72
D K26363 SNORA75, U23; small nucleolar RNA SNORA75
D K27151 SNORA84; small nucleolar RNA SNORA84
D K26478 SNR8; small nucleolar RNA SNR8
D K26479 SNR10; small nucleolar RNA SNR10
D K26465 SNR35; small nucleolar RNA SNR35
B Other snoRNA
C K14576 RMRP; small nucleolar RNA MRP
C K26477 NME1; small nucleolar RNA MRP
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024