+D Transcription factors KO #

  Transcription Factors - Roseovarius sp. THAF27

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D FIU89_09685 btr1; HTH-type transcriptional activator Btr K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D FIU89_00690 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D FIU89_04025 cdhR3; HTH-type transcriptional regulator CdhR K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D FIU89_13225 cdhR5; HTH-type transcriptional regulator CdhR K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D FIU89_20145 cdhR8; HTH-type transcriptional regulator CdhR K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D FIU89_10085 cdhR4; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D FIU89_15250 cdhR6; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D FIU89_02420 gcvA1; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_03155 gcvA2; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_05040 gcvA3; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_06360 gcvA4; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_10165 gcvA5; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_12835 gcvA7; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_14345 gcvA8; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_18145 gcvA9; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_18265 gcvA10; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_18675 gcvA11; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_21995 gcvA12; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D FIU89_15540 oxyR4; Hydrogen peroxide-inducible genes activator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D FIU89_13105 oxyR1; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D FIU89_14940 oxyR3; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D FIU89_21075 gltR3; HTH-type transcriptional regulator GltR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D FIU89_14385 glpR2; Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D FIU89_17030 glpR3; Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D FIU89_14795 purR; HTH-type transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D FIU89_01320 gntR; HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D FIU89_16815 phnF; putative transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D FIU89_07535 yvoA2; HTH-type transcriptional repressor YvoA K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D FIU89_05165 yvoA1; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator D FIU89_18025 pdhR; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D FIU89_00465 gabR; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D FIU89_06960 betI2; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D FIU89_18050 rutR; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator C Lrp/AsnC family D FIU89_00725 lrp1; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_03530 lrp3; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_05930 lrp6; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_18690 lrp10; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_19445 lrp11; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_20770 lrp12; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D FIU89_03830 lrp4; Leucine-responsive regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D FIU89_08320 lrp7; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D FIU89_13145 asnC2; Regulatory protein AsnC K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D FIU89_16020 lrp9; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D FIU89_18770 vjbR; HTH-type quorum sensing-dependent transcriptional regulator VjbR K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR C MarR family D FIU89_06635 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D FIU89_20965 merR1; Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D FIU89_17835 hmrR2; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D FIU89_21595 hmrR3; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D FIU89_08140 soxR2; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D FIU89_14090 B12 binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D FIU89_10700 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D FIU89_07525 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D FIU89_13390 perR; Peroxide-responsive repressor PerR K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D FIU89_00845 iclR1; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D FIU89_16190 pcaR1; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D FIU89_18960 pcaR2; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D FIU89_05225 crp; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D FIU89_08235 ntcA1; Global nitrogen regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D FIU89_18190 fixK2; Nitrogen fixation regulation protein FixK K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D FIU89_12105 ntcA2; Global nitrogen regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D FIU89_10430 iscR; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D FIU89_01760 nmtR; HTH-type transcriptional regulator NmtR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D FIU89_10960 DNA-binding transcriptional repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D FIU89_01475 arsC1; Arsenate-mycothiol transferase ArsC1 K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D FIU89_03850 bigR; Biofilm growth-associated repressor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D FIU89_06970 Helix-turn-helix domain protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D FIU89_03810 anaerobic benzoate catabolism transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D FIU89_07275 Helix-turn-helix protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D FIU89_21385 mntR; Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D FIU89_12020 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D FIU89_15130 antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D FIU89_05420 acoR1; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D FIU89_03580 higA-2; Antitoxin igA-2 K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D FIU89_05925 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D FIU89_11290 noc1; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FIU89_20405 parB1; Chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FIU89_20985 parB2; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FIU89_21025 parB3; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FIU89_21875 noc2; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FIU89_06420 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D FIU89_20425 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D FIU89_02370 Prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein D FIU89_02385 Prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein D FIU89_00955 paiB1; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D FIU89_12050 paiB2; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D FIU89_02475 hypothetical protein K07735 algH; putative transcriptional regulator D FIU89_08075 RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor D FIU89_10650 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D FIU89_14545 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D FIU89_12620 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0