+F Repair protein KO
#
DNA Repair and Recombination Proteins - Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SCAT_4745 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCAT_1121 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCAT_2708 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E SCAT_0848 ung; Uracil-DNA glycosylase 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_0680 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_0993 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SCAT_2611 protein of unknown function K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SCAT_2880 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E SCAT_2431 putative ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SCAT_3954 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_4596 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_2571 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_0176 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_4638 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SCAT_4745 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCAT_1121 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCAT_2708 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCAT_4970 putative DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E SCAT_0848 ung; Uracil-DNA glycosylase 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_0680 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_0358 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E SCAT_3208 Phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_5523 conserved protein of unknown function K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SCAT_4744 ada; putative regulatory protein ada [Includes: Methylated-DNA--protein-cysteine methyltransferase] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SCAT_2707 Putative regulatory protein ada [Includes: Methylated-DNA--protein-cysteine methyltransferase] (fragment) K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SCAT_0993 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SCAT_2611 protein of unknown function K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SCAT_4000 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SCAT_0253 DNA-(Apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SCAT_4408 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SCAT_4537 putative enzyme K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E SCAT_1748 putative enzyme K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E SCAT_2880 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SCAT_5405 exoA; putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SCAT_4830 Exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SCAT_1233 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E SCAT_2118 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
D DNA ligase
E SCAT_4325 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E SCAT_1135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SCAT_5070 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E SCAT_1111 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
E SCAT_1119 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B
E SCAT_1109 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E SCAT_4047 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_4051 uvrD; putative DNA helicase II homolog K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_3690 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_1135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E SCAT_4325 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SCAT_3566 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SCAT_3567 rpoC; RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SCAT_3619 rpoA; RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SCAT_5346 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SCAT_2123 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E SCAT_3918 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E SCAT_3917 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E SCAT_1183 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SCAT_3116 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SCAT_1607 putative DNA-binding protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SCAT_2855 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SCAT_4718 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SCAT_1027 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SCAT_3423 DNA polymerase III epsilon subunit-like 3'-5' exonuclease (fragment) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SCAT_5289 dnaQ; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SCAT_2949 dnaZ; DNA polymerase III subunit gamma K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SCAT_4325 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SCAT_4047 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_4051 uvrD; putative DNA helicase II homolog K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_3690 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SCAT_0619 ssb; Single-stranded DNA-binding protein 2 K03111 ssb; single-strand DNA-binding protein
E SCAT_1789 ssb; Single-stranded DNA-binding protein 2 K03111 ssb; single-strand DNA-binding protein
E SCAT_3146 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SCAT_1838 Exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E SCAT_4545 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA
E SCAT_5304 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E SCAT_5305 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SCAT_5303 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SCAT_5349 priA; putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E SCAT_0375 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E SCAT_0376 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E SCAT_4545 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA
E SCAT_2608 radA; DNA repair protein; 6-O-methylguanine-DNA methyltransferase K04485 radA; DNA repair protein RadA/Sms
E SCAT_3114 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E SCAT_4401 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SCAT_1575 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E SCAT_2946 recR; DNA repair and recombination protein K06187 recR; recombination protein RecR
E SCAT_0974 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E SCAT_5304 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E SCAT_5305 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SCAT_5303 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E SCAT_0375 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E SCAT_0376 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E SCAT_5458 Ku70/Ku80 protein K10979 ku; DNA end-binding protein Ku
E SCAT_5459 conserved protein of unknown function K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SCAT_4613 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SCAT_3111 gyrA; DNA gyrase (subunit A) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SCAT_4602 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SCAT_3112 gyrB; DNA gyrase (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SCAT_p1511 gyrB; DNA gyrase (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SCAT_2857 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SCAT_4389 hup; DNA-binding protein HU 2 K03530 hupB; DNA-binding protein HU-beta
F SCAT_1974 hup; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SCAT_1575 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F SCAT_2946 recR; DNA repair and recombination protein K06187 recR; recombination protein RecR
F SCAT_4325 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F SCAT_4593 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SCAT_2329 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SCAT_5070 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F SCAT_1111 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
F SCAT_1119 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SCAT_0706 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D SCAT_4545 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA
D SCAT_4575 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D SCAT_0974 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SCAT_0926 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D SCAT_0619 ssb; Single-stranded DNA-binding protein 2 K03111 ssb; single-strand DNA-binding protein
D SCAT_1789 ssb; Single-stranded DNA-binding protein 2 K03111 ssb; single-strand DNA-binding protein
D SCAT_3146 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCAT_4546 recX; Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D SCAT_0223 PHP C-terminal domain-containing protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D SCAT_4574 dinG; putative ATP-dependent helicase dinG homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SCAT_4538 lhr; putative ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D SCAT_3954 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_4596 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_2571 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_0176 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCAT_0970 nudF; putative ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D SCAT_4638 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SCAT_4578 nrdJ; Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SCAT_4087 rnr; Ribonucleoside-diphosphate reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SCAT_4086 putative ribonucleoside-diphosphate reductase small subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024