+F Repair protein KO
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DNA Repair and Recombination Proteins - Acinetobacter baumannii SDF
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ABSDF2809 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ABSDF1734 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ABSDF0617 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ABSDF3621 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ABSDF2363 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ABSDF1240 putative bifunctional protein [Includes: dGTP-pyrophosphohydrolase; thiamine phosphate synthase] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF3321 conserved hypothetical protein; putative MutT/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF0400 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF1963 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF2550 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ABSDF2809 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ABSDF1734 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ABSDF0617 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ABSDF3621 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ABSDF3624 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E ABSDF0616 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E ABSDF2363 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ABSDF3481 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ABSDF2897 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ABSDF3403 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E ABSDF0970 uvrB; excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B
E ABSDF3216 uvrC; excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme K03703 uvrC; excinuclease ABC subunit C
E ABSDF3070 putative ATP-dependent DNA helicase (PcrA) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ABSDF2897 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ABSDF3243 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ABSDF3242 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ABSDF0448 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ABSDF0321 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ABSDF1843 mfd; transcription-repair coupling protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ABSDF1117 mutS; methyl-directed mismatch repair, recognize exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E ABSDF1623 mutL; enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ABSDF2333 putative exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ABSDF2334 putative exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E ABSDF1457 putative DNA exonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E ABSDF1559 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ABSDF0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ABSDF3309 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E ABSDF2982 putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ABSDF1725 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ABSDF1361 rnhA-dnaQ; bifunctional protein [Includes: ribonuclease HI; DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function] K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
E ABSDF2208 dnaX; DNA polymerase III, tau and gamma subunits (DNA elongation factor III) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ABSDF3070 putative ATP-dependent DNA helicase (PcrA) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ABSDF3392 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
E ABSDF2754 putative Single-strand binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ABSDF3159 recB; exonuclease V, beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E ABSDF3160 recC; exonuclease V, gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E ABSDF3158 recD; exonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA
E ABSDF0916 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA
E ABSDF0915 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ABSDF2129 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ABSDF3144 priA; primosomal protein N' (= factor Y) directs replication fork assembly at D-loops, ATP-dependent. K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ABSDF2532 sbcC; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03546 sbcC; DNA repair protein SbcC/Rad50
E ABSDF2531 sbcD; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA
E ABSDF0846 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E ABSDF0003 recF; DNA replication, recombinaison and repair protein K03629 recF; DNA replication and repair protein RecF
E ABSDF0402 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ABSDF0955 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E ABSDF1915 recR; recombination protein, gap repair K06187 recR; recombination protein RecR
E ABSDF3200 recN; protein used in recombination and DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
E ABSDF0916 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA
E ABSDF0915 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ABSDF2129 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E ABSDF2532 sbcC; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03546 sbcC; DNA repair protein SbcC/Rad50
E ABSDF2531 sbcD; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ABSDF0860 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ABSDF0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ABSDF3073 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ABSDF1857 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ABSDF0955 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F ABSDF1915 recR; recombination protein, gap repair K06187 recR; recombination protein RecR
F ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F ABSDF1514 fis; DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ABSDF2906 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
F ABSDF1739 himD; integration host factor (IHF),beta subunit, site specific recombination K05788 ihfB; integration host factor subunit beta
E Supressor
F ABSDF3403 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F ABSDF0970 uvrB; excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B
F ABSDF3267 putative DNA binding protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ABSDF0208 dinP; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA
D ABSDF3200 recN; protein used in recombination and DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D ABSDF3392 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D ABSDF2754 putative Single-strand binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D ABSDF1693 recX; regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D ABSDF2551 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
C Modulation of nucleotide pools
D ABSDF1240 putative bifunctional protein [Includes: dGTP-pyrophosphohydrolase; thiamine phosphate synthase] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF3321 conserved hypothetical protein; putative MutT/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF0400 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF1963 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ABSDF2550 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ABSDF2721 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ABSDF2723 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024