+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acinetobacter baumannii SDF

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ABSDF2809 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ABSDF1734 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ABSDF0617 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ABSDF3621 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABSDF2363 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ABSDF1240 putative bifunctional protein [Includes: dGTP-pyrophosphohydrolase; thiamine phosphate synthase] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF3321 conserved hypothetical protein; putative MutT/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF0400 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF1963 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF2550 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ABSDF2809 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ABSDF1734 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ABSDF0617 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ABSDF3621 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABSDF3624 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ABSDF0616 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ABSDF2363 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ABSDF3481 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ABSDF2897 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ABSDF3403 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ABSDF0970 uvrB; excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B E ABSDF3216 uvrC; excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme K03703 uvrC; excinuclease ABC subunit C E ABSDF3070 putative ATP-dependent DNA helicase (PcrA) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ABSDF2897 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ABSDF3243 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ABSDF3242 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ABSDF0448 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ABSDF0321 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ABSDF1843 mfd; transcription-repair coupling protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ABSDF1117 mutS; methyl-directed mismatch repair, recognize exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E ABSDF1623 mutL; enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ABSDF2333 putative exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ABSDF2334 putative exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E ABSDF1457 putative DNA exonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E ABSDF1559 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ABSDF0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ABSDF3309 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E ABSDF2982 putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ABSDF1725 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ABSDF1361 rnhA-dnaQ; bifunctional protein [Includes: ribonuclease HI; DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function] K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] E ABSDF2208 dnaX; DNA polymerase III, tau and gamma subunits (DNA elongation factor III) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ABSDF3070 putative ATP-dependent DNA helicase (PcrA) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ABSDF3392 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E ABSDF2754 putative Single-strand binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ABSDF3159 recB; exonuclease V, beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E ABSDF3160 recC; exonuclease V, gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E ABSDF3158 recD; exonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA E ABSDF0916 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E ABSDF0915 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ABSDF2129 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ABSDF3144 priA; primosomal protein N' (= factor Y) directs replication fork assembly at D-loops, ATP-dependent. K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ABSDF2532 sbcC; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03546 sbcC; DNA repair protein SbcC/Rad50 E ABSDF2531 sbcD; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA E ABSDF0846 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E ABSDF0003 recF; DNA replication, recombinaison and repair protein K03629 recF; DNA replication and repair protein RecF E ABSDF0402 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ABSDF0955 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E ABSDF1915 recR; recombination protein, gap repair K06187 recR; recombination protein RecR E ABSDF3200 recN; protein used in recombination and DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) E ABSDF0916 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E ABSDF0915 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ABSDF2129 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E ABSDF2532 sbcC; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03546 sbcC; DNA repair protein SbcC/Rad50 E ABSDF2531 sbcD; ATP-dependent dsDNA exonuclease (Suppression of recBC) K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ABSDF0860 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ABSDF0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ABSDF3073 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ABSDF1857 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ABSDF3446 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ABSDF0955 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F ABSDF1915 recR; recombination protein, gap repair K06187 recR; recombination protein RecR F ABSDF2659 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F ABSDF1514 fis; DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F ABSDF2906 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha F ABSDF1739 himD; integration host factor (IHF),beta subunit, site specific recombination K05788 ihfB; integration host factor subunit beta E Supressor F ABSDF3403 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ABSDF0970 uvrB; excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B F ABSDF3267 putative DNA binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ABSDF0208 dinP; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D ABSDF1694 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA D ABSDF3200 recN; protein used in recombination and DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) D ABSDF3392 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D ABSDF2754 putative Single-strand binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D ABSDF1693 recX; regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ABSDF2551 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] C Modulation of nucleotide pools D ABSDF1240 putative bifunctional protein [Includes: dGTP-pyrophosphohydrolase; thiamine phosphate synthase] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF3321 conserved hypothetical protein; putative MutT/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF0400 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF1963 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABSDF2550 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ABSDF2721 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ABSDF2723 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024