+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Amborella trichopoda</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        18433323 mRNA cap guanine-N7 methyltransferase 1 isoform X1	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        18441485 mRNA cap guanine-N7 methyltransferase 2 isoform X1	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        18436476 mRNA-capping enzyme isoform X1	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        18445079 cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
D      Cap binding complex
E        18437968 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        18429635 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        18423063 pre-mRNA cleavage factor Im 25 kDa subunit 2	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        18433016 pre-mRNA cleavage factor Im 25 kDa subunit 1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        18433917 uncharacterized protein LOC18433917	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        18441943 cleavage and polyadenylation specificity factor subunit 6	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        18433022 protein CLP1 homolog isoform X1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        18441417 uncharacterized protein LOC18441417 isoform X2	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18447904 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        18441515 cleavage and polyadenylation specificity factor subunit 1 isoform X2	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        18422883 cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        18422723 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18422605 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18435927 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18425230 uncharacterized protein LOC18425230 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18444537 flowering time control protein FY isoform X1	K15542 PFS2; polyadenylation factor subunit 2 
E        18447097 protein ANTHESIS POMOTING FACTOR 1	K14962 WDR82; COMPASS component SWD2 
E        18437349 protein ANTHESIS POMOTING FACTOR 1	K14962 WDR82; COMPASS component SWD2 
E        18429837 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18432460 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18440237 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18422794 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18446227 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        18446239 cleavage stimulation factor subunit 50 isoform X1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        18424295 cleavage stimulating factor 64 isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        18427086 cleavage stimulation factor subunit 77 isoform X1	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        18433413 symplekin isoform X1	K06100 SYMPK; symplekin 
E        18442422 uncharacterized protein LOC18442422 isoform X1	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        18421525 small nuclear ribonucleoprotein-associated protein B'	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        18424057 small nuclear ribonucleoprotein SmD3b isoform X2	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        18443065 small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        18435458 small nuclear ribonucleoprotein E isoform X1	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        18437879 probable small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        18441247 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        18422883 cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        18422723 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18422605 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18424295 cleavage stimulating factor 64 isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        18433413 symplekin isoform X1	K06100 SYMPK; symplekin 
E        18442422 uncharacterized protein LOC18442422 isoform X1	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        18431574 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18444420 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18429357 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18425730 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18423938 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        18441600 probable N6-adenosine-methyltransferase MT-A70-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        18437873 methyltransferase-like protein 1	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        18441638 uncharacterized protein LOC18441638	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        18430767 FKBP12-interacting protein of 37 kDa isoform X1	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        18442383 uncharacterized protein LOC18442383 isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        18448339 zinc finger CCCH domain-containing protein 38 isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        18439695 E3 ubiquitin-protein ligase Hakai	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        18443481 nuclear poly(A) polymerase 4 isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        18445584 nuclear poly(A) polymerase 1 isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        18427207 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        18447293 protein BREAST CANCER SUSCEPTIBILITY 1 homolog	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        18422490 zinc finger CCCH domain-containing protein 27 isoform X1	K13192 RBM26; RNA-binding protein 26 
E        18440637 uncharacterized protein LOC18440637 isoform X1	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18436767 uncharacterized protein LOC18436767	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18426657 uncharacterized protein LOC18426657	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18429743 uncharacterized protein LOC18429743 isoform X1	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18426885 uncharacterized protein LOC18426885	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18438964 LOW QUALITY PROTEIN: RNA demethylase ALKBH5-like	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        18433047 uncharacterized protein LOC18433047	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
C    Other processing factors
D      18434109 KIN17-like protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      18442233 methyltransferase-like protein 22 isoform X1	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      18437862 serrate RNA effector molecule	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        18421716 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        18425718 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        18422064 THO complex subunit 4D isoform X1	K12881 THOC4; THO complex subunit 4 
E        18435950 THO complex subunit 4A isoform X1	K12881 THOC4; THO complex subunit 4 
E        18443738 DEAD-box ATP-dependent RNA helicase 56	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        18437609 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        18424247 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        18425596 pinin	K13114 PNN; pinin 
E        18422129 apoptotic chromatin condensation inducer in the nucleus isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        18427065 apoptotic chromatin condensation inducer in the nucleus	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        18436757 uncharacterized protein LOC18436757	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        18448398 serine/arginine-rich splicing factor SR45 isoform X1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        18436252 serine/arginine repetitive matrix protein 1 isoform X2	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        18437658 THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        18421718 THO complex subunit 2 isoform X2	K12879 THOC2; THO complex subunit 2 
E        18447443 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        18422064 THO complex subunit 4D isoform X1	K12881 THOC4; THO complex subunit 4 
E        18435950 THO complex subunit 4A isoform X1	K12881 THOC4; THO complex subunit 4 
E        18432806 THO complex subunit 5A isoform X1	K13174 THOC5; THO complex subunit 5 
E        18443687 THO complex subunit 6 isoform X1	K13175 THOC6; THO complex subunit 6 
E        18443802 THO complex subunit 7B	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        18421870 enhanced ethylene response protein 5 isoform X1	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        18447907 protein DELETION OF SUV3 SUPPRESSOR 1(I)	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        105420719 protein DSS1 HOMOLOG ON CHROMOSOME V-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        18427335 transcription and mRNA export factor SUS1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        18442839 SAC3 family protein C isoform X1	K23719 SAC3; nuclear mRNA export protein SAC3 
E        18440652 SAC3 family protein B isoform X1	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        110007092 nuclear-pore anchor	K09291 TPR; nucleoprotein TPR 
E        18422182 protein RAE1	K14298 RAE1; mRNA export factor 
E        18443041 LOW QUALITY PROTEIN: protein RAE1	K14298 RAE1; mRNA export factor 
E        18427102 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        18444311 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        18443361 nuclear pore complex protein NUP85	K14304 NUP85; nuclear pore complex protein Nup85 
E        18435301 nuclear pore complex protein NUP43	K14305 NUP43; nuclear pore complex protein Nup43 
E        18447776 uncharacterized protein LOC18447776 isoform X1	K14295 NUP50; nuclear pore complex protein Nup50 
E        18438177 nuclear pore complex protein NUP54 isoform X1	K14308 NUP54; nuclear pore complex protein Nup54 
E        18436108 nuclear pore complex protein NUP62 isoform X1	K14306 NUP62; nuclear pore complex protein Nup62 
E        18435800 nuclear pore complex protein NUP88 isoform X1	K14318 NUP88; nuclear pore complex protein Nup88 
E        18428340 nuclear pore complex protein NUP93A	K14309 NUP93; nuclear pore complex protein Nup93 
E        18430196 nuclear pore complex protein NUP98A isoform X1	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        18995784 nuclear pore complex protein NUP96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        18433750 nuclear pore complex protein NUP107 isoform X1	K14301 NUP107; nuclear pore complex protein Nup107 
E        18427643 nuclear pore complex protein NUP133	K14300 NUP133; nuclear pore complex protein Nup133 
E        18441682 uncharacterized protein LOC18441682 isoform X1	K14311 NUP188; nuclear pore complex protein Nup188 
E        18423797 nuclear pore complex protein NUP155 isoform X1	K14312 NUP155; nuclear pore complex protein Nup155 
E        18443385 nuclear pore complex protein NUP35	K14313 NUP35; nuclear pore complex protein Nup53 
E        18428382 nuclear pore complex protein NUP205 isoform X1	K14310 NUP205; nuclear pore complex protein Nup205 
E        18442019 nuclear pore complex protein GP210 isoform X1	K14314 NUP210; nuclear pore complex protein Nup210 
E        18425186 nuclear pore complex protein NUP214 isoform X1	K14317 NUP214; nuclear pore complex protein Nup214 
E        18446054 nuclear pore complex protein NUP58 isoform X1	K14307 NUPL1; nucleoporin p58/p45 
E        18440842 zinc finger CCCH domain-containing protein 46	K14321 NUPL2; nucleoporin-like protein 2 
E        18441940 uncharacterized protein LOC18441940 isoform X1	K14315 NDC1; nucleoporin NDC1 
E        18437047 protein SEH1	K14299 SEH1; nucleoporin SEH1 
E        18427094 aladin	K14320 AAAS; aladin 
E        18442028 protein GLE1 isoform X3	K18723 GLE1; nucleoporin GLE1 
D      Ran-mediated transport factors
E        18431719 GTP-binding nuclear protein Ran1B isoform X1	K07936 RAN; GTP-binding nuclear protein Ran 
E        18434372 GTP-binding nuclear protein Ran1A isoform X1	K07936 RAN; GTP-binding nuclear protein Ran 
E        18422826 GTP-binding nuclear protein Ran1B	K07936 RAN; GTP-binding nuclear protein Ran 
E        18444401 plant UBX domain-containing protein 10	K18726 FAF2; FAS-associated factor 2 
E        18426439 cell division control protein 48 homolog D	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        18430769 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        110007522 uncharacterized protein LOC110007522 isoform X1	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        18425436 protein N-lysine methyltransferase METTL21A isoform X1	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        18442288 protein-lysine methyltransferase METTL21D	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        18448035 protein EXPORTIN 1A	K14290 XPO1; exportin-1 
E        18442853 exportin-7 isoform X7	K18460 XPO7; exportin-7 
E        18424296 RAN GTPase-activating protein 2	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        18443288 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        18448820 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        18447328 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        18443664 eukaryotic initiation factor 4A-3	K03257 EIF4A; translation initiation factor 4A 
E        18448854 eukaryotic initiation factor 4A-9	K03257 EIF4A; translation initiation factor 4A 
E        18429102 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        18422803 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        18444008 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        18428443 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        18432605 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        18434476 uncharacterized protein LOC18434476	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        18431996 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        18429426 polyadenylate-binding protein 7	K13126 PABPC; polyadenylate-binding protein 
E        18444929 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        18444715 LOW QUALITY PROTEIN: 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        18437824 DExH-box ATP-dependent RNA helicase DExH11	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        18430266 malignant T-cell-amplified sequence 1 homolog isoform X2	K07575 MCTS; malignant T-cell-amplified sequence 
E        18440509 translation machinery-associated protein 22 isoform X1	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        18423195 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        18422166 UBP1-associated protein 2B	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18422168 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18427027 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18427031 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18435738 glycine-rich RNA-binding protein 3, mitochondrial	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18439808 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18447584 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18442029 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18442167 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18443590 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18427671 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        18427747 ELAV-like protein 1 isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        18447303 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        18425342 RNA-binding protein Musashi homolog 2	K14411 MSI; RNA-binding protein Musashi 
E        18446907 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        18429164 HBS1-like protein isoform X1	K14416 HBS1; elongation factor 1 alpha-like protein 
E        18440109 protein PELOTA 1 isoform X1	K06965 PELO; protein pelota 
E        18448763 protein PELOTA 1	K06965 PELO; protein pelota 
E        18423405 polyadenylate-binding protein 2 isoform X1	K14396 PABPN1; polyadenylate-binding protein 2 
E        18429139 polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        18442026 DEAD-box ATP-dependent RNA helicase 38	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        18422368 pre-mRNA-splicing factor SYF1 isoform X1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        18423896 pre-mRNA-splicing factor SYF1 isoform X1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        18423584 protein MODIFIER OF SNC1 11	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        18425156 transcription factor Pur-alpha 1	K21772 PURA; transcriptional activator protein Pur-alpha 
E        18432659 zinc finger CCCH domain-containing protein 34	K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 
E        18433511 SAC3 family protein A isoform X1	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        18433932 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        18444806 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        18421828 eukaryotic peptide chain release factor GTP-binding subunit ERF3A	K03267 ERF3; peptide chain release factor subunit 3 
E        18448386 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        18441596 regulator of nonsense transcripts UPF2 isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        18448461 regulator of nonsense transcripts UPF3 isoform X2	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        18432994 serine/threonine-protein phosphatase PP2A-1 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        18432606 serine/threonine-protein phosphatase PP2A-2 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        18435580 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        18443811 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        18438308 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        18443756 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        18430844 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        18445265 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        18447169 serine/threonine protein phosphatase 2A regulatory subunit B''beta	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        18424190 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        18425485 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        18431778 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        18429360 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        18441854 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        18446022 uncharacterized protein LOC18446022 isoform X1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        18446369 protein SMG7	K14409 SMG7; protein SMG7 
E        18428573 uncharacterized protein LOC18428573 isoform X1	K18734 SMG8; protein SMG8 
E        18443864 protein SMG9 isoform X1	K18735 SMG9; protein SMG9 
E        18434476 uncharacterized protein LOC18434476	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        18431323 pumilio homolog 24	K14844 PUF6; pumilio homology domain family member 6 
E        18431605 myosin-1	K10357 MYO5; myosin V 
E        18439453 LOW QUALITY PROTEIN: myosin-15	K10357 MYO5; myosin V 
E        18421431 myosin-12 isoform X1	K10357 MYO5; myosin V 
E        18433010 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        18434718 myosin-11 isoform X1	K10357 MYO5; myosin V 
E        18444199 myosin-6	K10357 MYO5; myosin V 
E        18443662 exosome component 10 isoform X4	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        18427720 far upstream element-binding protein 1	K13210 FUBP; far upstream element-binding protein 
E        18438305 far upstream element-binding protein 2	K13210 FUBP; far upstream element-binding protein 
E        18443754 far upstream element-binding protein 1	K13210 FUBP; far upstream element-binding protein 
E        18436151 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        18448544 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        18446056 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        18435694 elongation factor 1-gamma isoform X1	K03233 EEF1G; elongation factor 1-gamma 
E        18425235 probable ADP-ribosylation factor GTPase-activating protein AGD14	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
D      Other mRNA localization factors
E        18444008 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        18422018 KH domain-containing protein At4g18375 isoform X2	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18427252 KH domain-containing protein At4g18375 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18434789 RNA-binding KH domain-containing protein RCF3	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18435680 KH domain-containing protein HEN4 isoform X2	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18442473 RNA-binding KH domain-containing protein RCF3 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18442619 KH domain-containing protein HEN4 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18429485 flowering locus K homology domain isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110007622 KH domain-containing protein HEN4-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18428226 flowering locus K homology domain	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        18429178 RNA-binding KH domain-containing protein PEPPER	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        18425028 protein argonaute PNH1 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18429573 protein argonaute 10 isoform X2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18434703 protein argonaute 7	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18429507 protein argonaute 1A	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18423293 protein argonaute 4A isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18423291 protein argonaute 4B-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18438317 protein argonaute 1D	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18439464 protein argonaute 10	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18445387 protein argonaute 1 isoform X2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18443101 protein argonaute 2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        18443288 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        18448820 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        18447328 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        18448386 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        18428443 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        18432605 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        18423057 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        18437822 DEAD-box ATP-dependent RNA helicase 8 isoform X1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        18422680 protein decapping 5 isoform X2	K18749 LSM14; protein LSM14 
E        18439529 protein decapping 5 isoform X1	K18749 LSM14; protein LSM14 
E        18429670 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        18437537 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        18429156 transportin-1	K18752 TNPO1; transportin-1 
E        18446022 uncharacterized protein LOC18446022 isoform X1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        18446369 protein SMG7	K14409 SMG7; protein SMG7 
E        18432557 zinc finger CCCH domain-containing protein 15	K18753 ZFP36L; butyrate response factor 
E        110008401 uncharacterized protein LOC110008401	K18753 ZFP36L; butyrate response factor 
E        18422166 UBP1-associated protein 2B	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18422168 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18427027 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18427031 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18435738 glycine-rich RNA-binding protein 3, mitochondrial	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18439808 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18447584 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18442029 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18442167 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18443590 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        18431854 la-related protein 1B isoform X1	K18757 LARP1; la-related protein 1 
E        18427037 la-related protein 1A isoform X1	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        18995774 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        18426956 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        18427491 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        18440605 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        18444320 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        18430322 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        18435472 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        18995744 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        18439928 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        18429668 sm-like protein LSM8 isoform X1	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        18431605 myosin-1	K10357 MYO5; myosin V 
E        18439453 LOW QUALITY PROTEIN: myosin-15	K10357 MYO5; myosin V 
E        18421431 myosin-12 isoform X1	K10357 MYO5; myosin V 
E        18433010 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        18434718 myosin-11 isoform X1	K10357 MYO5; myosin V 
E        18444199 myosin-6	K10357 MYO5; myosin V 
E        18422434 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        18442468 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        18448826 tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        18428828 CCR4-NOT transcription complex subunit 1 isoform X2	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        18434421 probable NOT transcription complex subunit VIP2 isoform X4	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        18438370 probable NOT transcription complex subunit VIP2 isoform X2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        18421514 general negative regulator of transcription subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        18436110 general negative regulator of transcription subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        18423670 uncharacterized protein LOC18423670 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        18429302 carbon catabolite repressor protein 4 homolog 1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        18422698 carbon catabolite repressor protein 4 homolog 4 isoform X2	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        18447020 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18449082 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18449083 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18444485 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18444486 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18439583 DIS3-like exonuclease 2	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        18435880 protein PAT1 homolog 1 isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        18447475 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        18441596 regulator of nonsense transcripts UPF2 isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        18448461 regulator of nonsense transcripts UPF3 isoform X2	K14328 UPF3; regulator of nonsense transcripts 3 
E        18421598 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        18440791 uncharacterized protein LOC18440791 isoform X3	K20102 YTHDF; YTH domain-containing family protein 
E        18448943 YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
E        18448438 YTH domain-containing family protein 1	K20102 YTHDF; YTH domain-containing family protein 
E        18430483 uncharacterized protein LOC18430483	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        18433774 oligouridylate-binding protein 1 isoform X2	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        18440766 oligouridylate-binding protein 1 isoform X2	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        18431996 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        18429426 polyadenylate-binding protein 7	K13126 PABPC; polyadenylate-binding protein 
E        18444929 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        18444715 LOW QUALITY PROTEIN: 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        18435775 ras GTPase-activating protein-binding protein 2 isoform X2	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        18438232 ras GTPase-activating protein-binding protein 1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        18445812 eukaryotic translation initiation factor 2A isoform X1	K15026 EIF2A; translation initiation factor 2A 
E        18431617 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        18445785 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        18443664 eukaryotic initiation factor 4A-3	K03257 EIF4A; translation initiation factor 4A 
E        18448854 eukaryotic initiation factor 4A-9	K03257 EIF4A; translation initiation factor 4A 
E        18437609 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        18429102 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        18422803 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        18428078 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        18431744 tudor domain-containing protein 3 isoform X1	K18404 TDRD3; tudor domain-containing protein 3 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        18426956 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        18995774 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        18423057 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        18437822 DEAD-box ATP-dependent RNA helicase 8 isoform X1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        18447475 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        18435880 protein PAT1 homolog 1 isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        18427491 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        18440605 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        18444320 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        18430322 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        18435472 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        18995744 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        18439928 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        18429668 sm-like protein LSM8 isoform X1	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        18421415 5'-3' exoribonuclease 4	K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        105421190 uncharacterized protein LOC105421190 isoform X2	K07573 CSL4; exosome complex component CSL4 
E        18444985 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        18440646 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        18422924 putative exosome complex component rrp40	K03681 RRP40; exosome complex component RRP40 
E        18444314 exosome complex component RRP41 homolog isoform X1	K11600 RRP41; exosome complex component RRP41 
E        18443355 exosome complex exonuclease RRP46 homolog isoform X4	K12590 RRP46; exosome complex component RRP46 
E        18995814 exosome complex component RRP41-like	K12587 MTR3; exosome complex component MTR3 
E        18438727 exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
E        18440612 exosome complex component RRP43	K12586 RRP43; exosome complex component RRP43 
E        18448109 exosome complex component RRP45A isoform X1	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        18445482 exosome complex exonuclease RRP44 homolog A	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        18421529 protein RRP6-like 2	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        18435268 uncharacterized protein LOC18435268	K12592 C1D; exosome complex protein LRP1 
E        18436164 uncharacterized protein LOC18436164	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        18434758 non-canonical poly(A) RNA polymerase PAPD5 isoform X2	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        18440758 DExH-box ATP-dependent RNA helicase DExH10 isoform X2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        18448613 DExH-box ATP-dependent RNA helicase DExH9	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        18437824 DExH-box ATP-dependent RNA helicase DExH11	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        18439634 tetratricopeptide repeat protein SKI3 isoform X1	K12600 SKI3; superkiller protein 3 
E        18431392 WD repeat-containing protein VIP3	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        18429302 carbon catabolite repressor protein 4 homolog 1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        18422698 carbon catabolite repressor protein 4 homolog 4 isoform X2	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        18428828 CCR4-NOT transcription complex subunit 1 isoform X2	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        18434421 probable NOT transcription complex subunit VIP2 isoform X4	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        18438370 probable NOT transcription complex subunit VIP2 isoform X2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        18421514 general negative regulator of transcription subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        18436110 general negative regulator of transcription subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        18423670 uncharacterized protein LOC18423670 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        18447020 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18449082 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18449083 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18444485 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18444486 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        18433286 cell differentiation protein rcd1 isoform X1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        18436736 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        18446342 CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
E        18431414 ABC transporter I family member 20	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        18447164 ABC transporter I family member 21	K12608 CAF16; CCR4-NOT complex subunit CAF16 
D      Pan complex
D      Other 3'-5' decay factors
E        18447625 poly(A)-specific ribonuclease PARN isoform X1	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        18437216 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        18441817 uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X2	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        18421536 DExH-box ATP-dependent RNA helicase DExH3 isoform X2	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        18433864 DExH-box ATP-dependent RNA helicase DExH3 isoform X2	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        18438855 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        18443090 DExH-box ATP-dependent RNA helicase DExH6 isoform X2	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        18426125 uncharacterized protein LOC18426125	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        18439259 protein NRDE2 homolog isoform X1	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        18426777 protein RST1 isoform X1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        18424516 oligoribonuclease isoform X1	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
E        18432470 uncharacterized protein LOC18432470 isoform X1	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        18421685 enolase 1, chloroplastic	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        18437797 cytosolic enolase 3	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        18441538 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        18434053 enolase 1, chloroplastic	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        18421647 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        18426556 polyribonucleotide nucleotidyltransferase 2, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        18422303 ATP-dependent 6-phosphofructokinase 5, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        18443495 ATP-dependent 6-phosphofructokinase 6	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        18428262 ATP-dependent 6-phosphofructokinase 6 isoform X1	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        18447499 ATP-dependent 6-phosphofructokinase 2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        18446467 ATP-dependent 6-phosphofructokinase 3	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        18438590 ATP-dependent 6-phosphofructokinase 3	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        18439710 heat shock 70 kDa protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        18446448 heat shock 70 kDa protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        18431476 chaperonin CPN60-2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        18428814 ruBisCO large subunit-binding protein subunit beta, chloroplastic	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        18434010 ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        18432542 chaperonin CPN60, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        18440646 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        105421190 uncharacterized protein LOC105421190 isoform X2	K07573 CSL4; exosome complex component CSL4 
E        18444985 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        18444314 exosome complex component RRP41 homolog isoform X1	K11600 RRP41; exosome complex component RRP41 
E        18438727 exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024