+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bacillus velezensis NAU-B3
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BAPNAU_2175 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BAPNAU_1223 era; era-like GTP-binding protein K03595 era; GTPase
C BAPNAU_1061 obgE; tRNA modification GTPase mnmE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BAPNAU_2107 nusA; Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
C BAPNAU_1317 nusB; nusB-like N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C BAPNAU_0100 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
C BAPNAU_1377 nusG1; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BAPNAU_2880 ytzF; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BAPNAU_0042 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BAPNAU_2195 sun; sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BAPNAU_0105 ybxB; methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BAPNAU_2266 ylbH; methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BAPNAU_1208 yqeU; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BAPNAU_3996 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BAPNAU_2253 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BAPNAU_0036 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BAPNAU_1323 yqxC; putative protein yqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BAPNAU_3809 yxjB; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D BAPNAU_0095 yacO; RNA methyltransferase, TrmH family K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BAPNAU_3902 yydA; rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BAPNAU_3757 ywbD; putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BAPNAU_2194 yloN; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BAPNAU_0497 YloN1; ribosomal RNA large subunit methyltransferase N K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D BAPNAU_1323 yqxC; putative protein yqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BAPNAU_0640 trmA; RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BAPNAU_0757 yfjO; RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BAPNAU_1457 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BAPNAU_2855 yhcT; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BAPNAU_2632 yjbO; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BAPNAU_2224 ylyB; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C BAPNAU_0558 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BAPNAU_3105 yjcK; ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C BAPNAU_0385 ydaF; ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C BAPNAU_2166 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
C BAPNAU_1207 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C BAPNAU_2175 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BAPNAU_1113 yrrK; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C BAPNAU_0094 yazC; ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C BAPNAU_3819 dbpA; ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BAPNAU_0435 ydbR; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BAPNAU_1238 yqfR; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C BAPNAU_1223 era; era-like GTP-binding protein K03595 era; GTPase
C BAPNAU_2190 yloQ; ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BAPNAU_1487 engA; GTP-binding protein engA K03977 engA; GTPase
C BAPNAU_1061 obgE; tRNA modification GTPase mnmE K03979 obgE; GTPase [EC:3.6.5.-]
C BAPNAU_2163 rbgA; GTP-binding protein engA K14540 rbgA; ribosome biogenesis GTPase A
C BAPNAU_2020 ynbA; putative GTP-binding protein ynbA K03665 hflX; GTPase
C BAPNAU_1182 yqeH; GTP-binding protein YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C BAPNAU_3612 ywlC; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BAPNAU_1089 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BAPNAU_2102 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BAPNAU_2108 ylxS; UPF0090 protein K09748 rimP; ribosome maturation factor RimP
C BAPNAU_0003 yaaA; putative protein yaaA K14761 rlbA; ribosome-associated protein
C BAPNAU_1187 Ij; Protein Iojap K09710 ybeB; ribosome-associated protein
C BAPNAU_1220 yqfG; putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C BAPNAU_1184 CAF1; putative RNA binding protein K07574 yhbY; RNA-binding protein
C BAPNAU_3443 yvyD; putative protein yvyD K05808 hpf; ribosome hibernation promoting factor
C BAPNAU_3987 ychF; putative GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C BAPNAU_2260 ylbN; putative metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024