+F Repair protein KO #

  DNA Repair and Recombination Proteins - Babesia bovis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BBOV_I001530 Sec63 Brl domain family protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] C BER (base exicision repair) D DNA glycosylases E BBOV_III006230 putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BBOV_I004290 8-oxoguanine DNA glycosylase N-terminal domain family protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E BBOV_I003140 base excision DNA repair protein HhH-GPD family domain containing protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BBOV_III005900 apurinic endonuclease (APN1) family protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F BBOV_IV008750 DNA polymerase B family protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F BBOV_III004800 DNA polymerase alpha/epsilon subunit B family protein K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F BBOV_III009080 DNA polymerase B exonuclease domain family protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] E BBOV_IV002070 putative proliferating cell nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen E BBOV_II006360 proliferating cell nuclear antigen (pcna) family protein K04802 PCNA; proliferating cell nuclear antigen E BBOV_I000370 XPG I nuclease region family protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E BBOV_IV001520 DNA ligase I ATP-dependent (dnl1) family protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors E BBOV_IV000690 Polynucleotide kinase 3 phosphatase family protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F BBOV_IV005590 Rad4 beta-hairpin domain 1 family protein K10838 XPC; xeroderma pigmentosum group C-complementing protein F BBOV_IV009040 DNA repair protein Rad23 putatitive K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F BBOV_III007590 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F BBOV_III001760 Cullin family protein K10609 CUL4; cullin 4 F BBOV_IV005010 CPSF A subunit region family protein K10610 DDB1; DNA damage-binding protein 1 E NER4 complex F BBOV_III008700 hypothetical protein K15083 RAD16; DNA repair protein RAD16 D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F BBOV_I003360 RNA polymerase Rpb1 family protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F BBOV_II002050 putative DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F BBOV_I002600 RNA polymerase Rpb3/RpoA insert domain family protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F BBOV_III006040 RNA polymerase Rpb4 family protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F BBOV_III009920 RNA polymerase Rpb5 N-terminal domain containing protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F BBOV_II001260 RNA polymerase Rpb6 family protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F BBOV_IV005170 putative DNA-directed RNA polymerase II subunit rpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F BBOV_IV005100 RNA polymerase Rpb8 family protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F BBOV_II007540 putative DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F BBOV_III004290 RNA_pol_N superfamily protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F BBOV_III004050 RNA polymerase Rpb3/Rpb11 dimerization domain family protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 E Cul4-CSA complex F BBOV_III007590 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F BBOV_III001760 Cullin family protein K10609 CUL4; cullin 4 F BBOV_IV005010 CPSF A subunit region family protein K10610 DDB1; DNA damage-binding protein 1 E Other TCR factor F BBOV_II004920 SNF2 domain-containing protein / helicase domain-containing protein K10841 ERCC6; DNA excision repair protein ERCC-6 F BBOV_I005090 Transcription elongation factor Elf1 like family protein K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E BBOV_III010030 DNA repair helicase rad25 family protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E BBOV_IV001300 DNA repair helicase (rad3) family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E BBOV_IV001810 transcription factor Ssl1-like family protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E BBOV_III009150 Transcription factor Tfb4 family protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E BBOV_IV008020 Transcription factor Tfb2 family protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E BBOV_I002150 Transcription factor TFIIH complex subunit Tfb5 family protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E BBOV_IV010230 cyclin-dependent kinase-related domain containing protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E BBOV_III006810 Cyclin N-terminal domain family protein K06634 CCNH; cyclin H E BBOV_II005680 CDK-activating kinase assembly factor MAT1 family protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E BBOV_III010480 replication factor-a protein 1 (rpa1) family protein K07466 RFA1; replication factor A1 E BBOV_III011120 replication factor A2 family protein K10739 RFA2; replication factor A2 D Other NER factors E BBOV_III011710 DNA repair protein rad10 family protein K10849 ERCC1; DNA excision repair protein ERCC-1 E BBOV_IV002550 DNA repair endonuclease family protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E BBOV_II000500 XPG I-region DNA excision repair family protein K10846 ERCC5; DNA excision repair protein ERCC-5 E BBOV_IV001520 DNA ligase I ATP-dependent (dnl1) family protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] E BBOV_IV008215 DNA repair/transcription protein MET18/MMS19 domain protein K15075 MET18; DNA repair/transcription protein MET18/MMS19 C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BBOV_I003810 MutS domain DNA mismatch family protein K08735 MSH2; DNA mismatch repair protein MSH2 E BBOV_I004430 MutS DNA mismatch domain family protein K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E BBOV_IV010910 DNA mismatch repair protein C-terminal domain family protein K08734 MLH1; DNA mismatch repair protein MLH1 E BBOV_IV001710 DNA mismatch repair protein C-terminal domain family protein K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E BBOV_IV008750 DNA polymerase B family protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E BBOV_III004800 DNA polymerase alpha/epsilon subunit B family protein K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E BBOV_III010480 replication factor-a protein 1 (rpa1) family protein K07466 RFA1; replication factor A1 E BBOV_III011120 replication factor A2 family protein K10739 RFA2; replication factor A2 D RFC (replication factor C) E BBOV_III002070 Replication factor RFC1 C terminal domain family protein K10754 RFC1; replication factor C subunit 1 E BBOV_IV002210 Replication factor C subunit family member K10755 RFC2_4; replication factor C subunit 2/4 E BBOV_III002960 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 E BBOV_IV003080 Replication factor C C-terminal domain family protein K10756 RFC3_5; replication factor C subunit 3/5 E BBOV_II002510 Replication factor C C-terminal domain family protein K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E BBOV_IV002070 putative proliferating cell nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen E BBOV_II006360 proliferating cell nuclear antigen (pcna) family protein K04802 PCNA; proliferating cell nuclear antigen E BBOV_II003860 XPG I-region nuclease family protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E BBOV_IV001520 DNA ligase I ATP-dependent (dnl1) family protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E BBOV_III007250 DNA repair protein Mre11 family protein K10865 MRE11; double-strand break repair protein MRE11 D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E BBOV_III007250 DNA repair protein Mre11 family protein K10865 MRE11; double-strand break repair protein MRE11 D BRCA complex E BBOV_II003540 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E BBOV_II003540 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51 E BBOV_II001330 Rad51 family protein K10880 XRCC3; DNA-repair protein XRCC3 D Rad52 family proteins D Rad54 family proteins E BBOV_IV009640 SNF2 (DNA repair and recombination) N-terminal domain family protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] D RecQ family DNA helicases D Bloom's syndrome complex (BTR) E BBOV_III001510 DNA topoisomerase family protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E BBOV_II000360 DNA topoisomerase family protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E BBOV_III010480 replication factor-a protein 1 (rpa1) family protein K07466 RFA1; replication factor A1 E BBOV_III011120 replication factor A2 family protein K10739 RFA2; replication factor A2 D Protein phosphatase 4 E BBOV_III010990 Serine/threonine-protein phosphatase family protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E BBOV_II006300 PPP4R2 family protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2 E BBOV_III002150 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3 D AP-5 complex D SMC5-SMC6 complex E BBOV_II000820 structural maintenance of chromosomes family protein K22803 SMC5; structural maintenance of chromosomes protein 5 E BBOV_I003080 Zinc-finger of the MIZ type in Nse subunit family protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] D Other HR factors E BBOV_IV002670 uncharacterized protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E BBOV_II002950 26 proteasome complex subunit family protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E BBOV_I000400 ATPase associated with various cellular activities (AAA) family protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex E BBOV_III007250 DNA repair protein Mre11 family protein K10865 MRE11; double-strand break repair protein MRE11 D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E BBOV_III001510 DNA topoisomerase family protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E BBOV_II000360 DNA topoisomerase family protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E BBOV_II003540 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others E BBOV_IV007470 uncharacterized protein K23314 WRAP53; telomerase Cajal body protein 1 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BBOV_I000470 impB/mucB/samB DNA repair family protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] C B-family DNA polymerases D BBOV_III010120 DNA polymerase B family protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7] C A-family DNA polymerase C Rad6 epistasis group D BBOV_III003380 Ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] D BBOV_II004660 putative Ubiquitin-conjugating enzyme E2 2 K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23] D BBOV_III004030 Ubiquitin-conjugating enzyme spm2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D BBOV_IV007110 putative ubiquitin-conjugating enzyme E2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D BBOV_IV002070 putative proliferating cell nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen D BBOV_II006360 proliferating cell nuclear antigen (pcna) family protein K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D BBOV_IV002210 Replication factor C subunit family member K10755 RFC2_4; replication factor C subunit 2/4 D BBOV_III002960 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 D BBOV_IV003080 Replication factor C C-terminal domain family protein K10756 RFC3_5; replication factor C subunit 3/5 D BBOV_II002510 Replication factor C C-terminal domain family protein K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex D BBOV_IV001620 uncharacterized protein K23387 GET4; golgi to ER traffic protein 4 C Other check point factors D BBOV_III011480 phosphatidylinositol 3- and 4-kinase family protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1] D BBOV_II006430 14-3-3 domain containing protein K06630 YWHAE; 14-3-3 protein epsilon D BBOV_II000190 ATPase associated with various cellular activities (AAA) family protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D BBOV_I000900 Exonuclease V - a 5' deoxyribonuclease family protein K17815 EXO5; exonuclease V [EC:3.1.-.-] C Helicases C PSO4 complex D BBOV_IV006920 WD domain G-beta repeat family protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D BBOV_IV003030 pre-mRNA splicing factor component family protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D BBOV_II007630 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27 D BBOV_III007650 WD domain G-beta repeat family protein K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D BBOV_IV005770 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BBOV_I004870 putative Ribonucleoside-diphosphate reductase large chain 1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D BBOV_IV010610 putative Ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] D BBOV_IV006460 Ribonucleotide reductase small chain family protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E BBOV_III006230 putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BBOV_I003140 base excision DNA repair protein HhH-GPD family domain containing protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BBOV_III011410 RNA polymerase Rpb3/RpoA insert domain family protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BBOV_IV001020 putative DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E BBOV_II005310 Single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BBOV_IV003640 DNA gyrase/topoisomerase IV subunit A family protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BBOV_IV011850 DNA gyrase B family protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D BBOV_II005310 Single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D BBOV_IV005770 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024