+D GENES KO #

  KEGG Orthology (KO) - Bdellovibrio sp. qaytius

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:bdq00010] D CIK05_07080 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_09985 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D CIK05_03925 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CIK05_03915 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CIK05_04855 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_03545 hypothetical protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CIK05_08740 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CIK05_04905 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CIK05_14410 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CIK05_13195 pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_12785 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_04335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:bdq00020] D CIK05_02770 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D CIK05_04705 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CIK05_02160 isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CIK05_04850 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CIK05_04845 dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_15570 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CIK05_15565 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CIK05_00100 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CIK05_00105 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CIK05_00095 cytochrome B subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CIK05_06460 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CIK05_15560 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CIK05_04335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D CIK05_14410 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CIK05_13195 pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:bdq00030] D CIK05_07080 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CIK05_04790 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CIK05_02260 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CIK05_00535 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CIK05_08345 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CIK05_15700 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_11590 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CIK05_09985 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:bdq00040] D CIK05_07065 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CIK05_04790 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CIK05_12155 class II aldolase family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:bdq00051] D CIK05_07045 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_15200 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CIK05_07085 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CIK05_07090 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D CIK05_12155 class II aldolase family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_09985 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D CIK05_03925 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CIK05_08345 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:bdq00052] D CIK05_05200 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CIK05_07065 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:bdq00500] D CIK05_07065 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CIK05_07125 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_07080 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bdq00520] D CIK05_15230 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CIK05_14115 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CIK05_07965 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CIK05_14120 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CIK05_15205 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D CIK05_15195 hypothetical protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D CIK05_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CIK05_03260 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CIK05_07075 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_07175 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_12185 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_07065 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CIK05_05200 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CIK05_07080 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CIK05_15200 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CIK05_07045 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CIK05_07085 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CIK05_07090 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D CIK05_07125 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D CIK05_07120 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D CIK05_07095 pyridoxamine 5-phosphate oxidase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:bdq00620] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_14410 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CIK05_13195 pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_12785 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CIK05_08740 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CIK05_15745 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_09260 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D CIK05_15560 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CIK05_06460 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CIK05_07330 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CIK05_04335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D CIK05_04905 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bdq00630] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_15560 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CIK05_02770 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D CIK05_04705 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_13245 protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D CIK05_15740 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_08340 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CIK05_13420 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CIK05_13445 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13450 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_12780 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_01950 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_11240 kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:bdq00640] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_03645 3-methyl-2-oxobutanoate dehydrogenase K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D CIK05_03650 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D CIK05_08955 pyruvate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_15745 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_15740 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D CIK05_15565 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CIK05_15570 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CIK05_04075 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CIK05_06295 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D CIK05_06305 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D CIK05_06300 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:bdq00650] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_09170 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_09165 enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D CIK05_13245 protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D CIK05_00100 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CIK05_00105 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CIK05_00095 cytochrome B subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_07940 hypothetical protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CIK05_14765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D CIK05_08720 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D CIK05_08725 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D CIK05_10365 D-beta-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D CIK05_13230 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:bdq00660] D CIK05_13230 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CIK05_15565 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CIK05_15570 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:bdq00562] D CIK05_13725 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CIK05_04075 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CIK05_03925 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:bdq00190] D CIK05_15905 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D CIK05_12610 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D CIK05_12605 NADH-quinone oxidoreductase subunit C K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D CIK05_12600 NAD(P)H-dependent oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D CIK05_12595 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D CIK05_12590 NADH dehydrogenase subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D CIK05_15900 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D CIK05_12585 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D CIK05_15895 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D CIK05_15890 NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D CIK05_15885 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D CIK05_15880 Fe-S-binding domain-containing protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D CIK05_15875 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D CIK05_00100 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CIK05_00105 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CIK05_00095 cytochrome B subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CIK05_02015 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CIK05_02010 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D CIK05_02005 cytochrome C oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D CIK05_02000 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D CIK05_01995 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D CIK05_07655 cytochrome aa3 controlling protein CtaA K02259 COX15; heme a synthase [EC:1.17.99.9] D CIK05_15945 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CIK05_15935 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CIK05_15940 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CIK05_15950 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CIK05_15930 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CIK05_00045 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CIK05_15955 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CIK05_15960 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CIK05_00050 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CIK05_03760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:bdq00680] D CIK05_08340 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CIK05_07330 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CIK05_15560 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CIK05_09985 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_04855 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_03545 hypothetical protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_04605 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_06250 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00910 Nitrogen metabolism [PATH:bdq00910] D CIK05_09445 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D CIK05_13355 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_01340 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:bdq00920] D CIK05_07680 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D CIK05_02825 hypothetical protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2] D CIK05_03500 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CIK05_12670 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:bdq00061] D CIK05_15745 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CIK05_08355 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CIK05_08365 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CIK05_08370 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_13215 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_01565 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_03550 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_08350 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CIK05_08360 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_11265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_09355 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_12855 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:bdq00071] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_07815 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D CIK05_09355 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_12855 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis [PATH:bdq00100] D CIK05_03560 hypothetical protein K00227 SC5DL; Delta7-sterol 5-desaturase [EC:1.14.19.20] C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:bdq00561] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_12785 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CIK05_04890 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CIK05_09220 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CIK05_04590 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CIK05_05280 hypothetical protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] C 00564 Glycerophospholipid metabolism [PATH:bdq00564] D CIK05_14885 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CIK05_09220 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CIK05_04590 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CIK05_12725 alpha/beta hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5] D CIK05_08590 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CIK05_07695 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CIK05_15305 hypothetical protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CIK05_04595 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CIK05_02510 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CIK05_09140 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CIK05_01760 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CIK05_02590 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D CIK05_05850 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D CIK05_03565 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D CIK05_09565 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D CIK05_10000 hypothetical protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D CIK05_10005 hypothetical protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D CIK05_07910 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:bdq00592] D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:bdq01040] D CIK05_14745 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D CIK05_14190 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:bdq00230] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_11590 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CIK05_07850 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CIK05_07860 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D CIK05_07865 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CIK05_07875 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D CIK05_07870 phosphoribosylformylglycinamidine synthase K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D CIK05_07885 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D CIK05_05455 hypothetical protein K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D CIK05_07840 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D CIK05_07835 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D CIK05_07855 phosphoribosylaminoimidazole succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D CIK05_08035 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CIK05_07880 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CIK05_12945 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CIK05_15710 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CIK05_15335 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CIK05_03155 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CIK05_15160 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CIK05_09755 guanosine monophosphate reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CIK05_08675 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CIK05_15580 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CIK05_11585 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CIK05_09070 xanthine dehydrogenase K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D CIK05_09065 xanthine dehydrogenase molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D CIK05_08670 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CIK05_01475 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CIK05_09075 tRNA-specific adenosine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D CIK05_10210 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D CIK05_05005 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08290 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08285 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CIK05_10200 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CIK05_03775 hypothetical protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CIK05_00485 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CIK05_13135 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CIK05_14380 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CIK05_14465 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CIK05_06245 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CIK05_02255 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D CIK05_12255 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CIK05_10505 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CIK05_03975 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] C 00240 Pyrimidine metabolism [PATH:bdq00240] D CIK05_03320 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CIK05_03310 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CIK05_03305 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CIK05_11510 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D CIK05_13360 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D CIK05_03690 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CIK05_12470 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CIK05_15290 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CIK05_15580 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CIK05_10505 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CIK05_13040 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CIK05_03960 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D CIK05_04095 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D CIK05_04090 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D CIK05_03160 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D CIK05_15705 thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D CIK05_06605 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D CIK05_05005 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08290 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08285 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CIK05_10805 hypothetical protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CIK05_03900 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D CIK05_10265 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CIK05_14105 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D CIK05_03140 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CIK05_06455 NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:bdq00250] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_12720 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CIK05_06385 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D CIK05_06245 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CIK05_08035 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CIK05_03305 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_07940 hypothetical protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CIK05_13355 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D CIK05_05325 L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_03320 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CIK05_03310 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CIK05_07875 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D CIK05_14115 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CIK05_07850 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:bdq00260] D CIK05_02640 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_07390 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_02515 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CIK05_09340 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D CIK05_08340 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CIK05_04855 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_03545 hypothetical protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_04605 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_06250 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_06455 NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D CIK05_13420 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CIK05_13445 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13450 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_12780 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_01950 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_02510 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CIK05_15520 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D CIK05_15515 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CIK05_03935 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] C 00270 Cysteine and methionine metabolism [PATH:bdq00270] D CIK05_12670 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CIK05_15515 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CIK05_00995 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CIK05_15520 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D CIK05_07200 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CIK05_03280 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CIK05_14870 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CIK05_12150 hypothetical protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CIK05_15335 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CIK05_12160 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D CIK05_07410 guanylate cyclase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D CIK05_11825 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CIK05_05485 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CIK05_02640 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_07390 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_02515 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CIK05_13485 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CIK05_00720 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03500 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CIK05_15560 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CIK05_04605 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_06250 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:bdq00280] D CIK05_13485 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CIK05_08400 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D CIK05_03645 3-methyl-2-oxobutanoate dehydrogenase K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D CIK05_03650 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D CIK05_08955 pyruvate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_05050 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CIK05_15740 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D CIK05_04075 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_14800 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D CIK05_14795 enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D CIK05_14765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D CIK05_08720 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D CIK05_08725 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bdq00290] D CIK05_03935 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CIK05_13230 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CIK05_13485 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CIK05_08400 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] C 00300 Lysine biosynthesis [PATH:bdq00300] D CIK05_02640 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_07390 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_02515 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CIK05_00545 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CIK05_00540 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CIK05_09785 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D CIK05_00550 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CIK05_09775 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CIK05_03215 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CIK05_03220 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:bdq00310] D CIK05_04845 dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_07940 hypothetical protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CIK05_13760 KamA family radical SAM protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:bdq00220] D CIK05_04730 hypothetical protein K01476 rocF; arginase [EC:3.5.3.1] D CIK05_07875 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_13355 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:bdq00330] D CIK05_14525 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D CIK05_14570 arginase K01480 speB; agmatinase [EC:3.5.3.11] D CIK05_14870 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_15130 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D CIK05_15125 succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D CIK05_04730 hypothetical protein K01476 rocF; arginase [EC:3.5.3.1] D CIK05_02430 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D CIK05_05325 L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CIK05_02245 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:bdq00340] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CIK05_04805 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D CIK05_04810 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D CIK05_04870 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D CIK05_09335 formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:bdq00350] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CIK05_14675 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D CIK05_14670 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D CIK05_02055 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D CIK05_02065 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D CIK05_07940 hypothetical protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:bdq00360] D CIK05_14640 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D CIK05_10255 3-hxdroxyacyl-CoA dehydrogenase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D CIK05_09170 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CIK05_14675 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D CIK05_09550 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D CIK05_01095 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:bdq00380] D CIK05_09470 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D CIK05_11240 kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D CIK05_11225 hypothetical protein K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9] D CIK05_11230 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D CIK05_11255 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] D CIK05_11260 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D CIK05_11245 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D CIK05_11250 2-aminomuconate deaminase K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5] D CIK05_04845 dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_01095 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bdq00400] D CIK05_02215 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CIK05_02165 hypothetical protein K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CIK05_02170 hypothetical protein K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D CIK05_02180 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CIK05_14640 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:bdq00410] D CIK05_14730 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CIK05_14715 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_04075 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism D CIK05_06385 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:bdq00450] D CIK05_00995 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CIK05_07200 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CIK05_15515 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CIK05_14970 cysteine desulfurase CsdA K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D CIK05_14490 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CIK05_07270 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_08990 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D CIK05_08340 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:bdq00470] D CIK05_12705 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CIK05_02795 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_05910 hypothetical protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_07875 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D CIK05_09760 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CIK05_00520 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_03240 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_00550 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CIK05_09775 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CIK05_09550 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:bdq00480] D CIK05_00720 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CIK05_00735 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CIK05_10705 aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CIK05_10645 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CIK05_05585 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_01840 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_10765 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_02160 isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CIK05_14870 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:bdq00540] D CIK05_10470 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CIK05_06350 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CIK05_03525 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CIK05_12895 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CIK05_10460 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CIK05_10455 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CIK05_13035 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CIK05_12190 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CIK05_13020 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CIK05_13045 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CIK05_06785 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CIK05_10450 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CIK05_07070 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CIK05_13335 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D CIK05_03040 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D CIK05_14635 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D CIK05_03850 galactokinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] D CIK05_10440 glycosyltransferase family 9 protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CIK05_07040 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis [PATH:bdq00542] D CIK05_07180 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bdq00541] D CIK05_07065 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CIK05_05200 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CIK05_07165 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CIK05_07125 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D CIK05_07120 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D CIK05_07095 pyridoxamine 5-phosphate oxidase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D CIK05_07045 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CIK05_07085 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CIK05_07090 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D CIK05_14120 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CIK05_07075 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_07175 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_12185 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00550 Peptidoglycan biosynthesis [PATH:bdq00550] D CIK05_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CIK05_03260 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CIK05_03255 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CIK05_00520 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_03240 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_03215 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CIK05_02795 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_05910 hypothetical protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_03220 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CIK05_15300 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CIK05_11545 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CIK05_03235 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CIK05_03250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CIK05_15065 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_04465 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_15170 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CIK05_13800 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CIK05_01935 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CIK05_06575 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CIK05_03180 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CIK05_14595 penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CIK05_03105 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:bdq00552] D CIK05_11545 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CIK05_07180 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:bdq00543] D CIK05_07180 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CIK05_12670 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:bdq00730] D CIK05_07990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CIK05_08150 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CIK05_12015 hypothetical protein K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D CIK05_12255 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:bdq00740] D CIK05_12495 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CIK05_14665 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CIK05_12490 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D CIK05_12500 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D CIK05_10425 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:bdq00750] D CIK05_10725 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D CIK05_00060 pyridoxal phosphate biosynthetic protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D CIK05_07970 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] C 00760 Nicotinate and nicotinamide metabolism [PATH:bdq00760] D CIK05_12720 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CIK05_00850 quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D CIK05_04765 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D CIK05_15710 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CIK05_15660 ribosome silencing factor RsfS K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D CIK05_10505 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CIK05_15620 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D CIK05_02595 damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D CIK05_12880 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D CIK05_07940 hypothetical protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:bdq00770] D CIK05_13230 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CIK05_14710 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D CIK05_14705 hypothetical protein K24263 panG; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D CIK05_14715 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CIK05_14725 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D CIK05_14720 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D CIK05_10505 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CIK05_02920 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D CIK05_12845 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D CIK05_08945 hypothetical protein K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D CIK05_00845 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D CIK05_13485 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CIK05_14730 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:bdq00780] D CIK05_08350 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CIK05_08360 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_11265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_04760 biotin synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:bdq00785] D CIK05_08650 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D CIK05_13210 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D CIK05_13190 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_14410 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CIK05_13195 pyruvate dehydrogenase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CIK05_04850 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CIK05_04845 dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CIK05_03645 3-methyl-2-oxobutanoate dehydrogenase K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D CIK05_03650 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D CIK05_08955 pyruvate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D CIK05_13420 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CIK05_13445 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CIK05_13450 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_12780 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D CIK05_01950 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:bdq00790] D CIK05_10655 GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D CIK05_06620 GTP cyclohydrolase I FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D CIK05_03225 hypothetical protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D CIK05_10635 phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D CIK05_03660 hypothetical protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D CIK05_03665 hypothetical protein K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] D CIK05_03135 hypothetical protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CIK05_03670 hypothetical protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D CIK05_12495 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CIK05_14145 type 1 glutamine amidotransferase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D CIK05_14150 hypothetical protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D CIK05_09130 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CIK05_09135 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CIK05_14640 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D CIK05_00575 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CIK05_07610 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CIK05_03230 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:bdq00670] D CIK05_03135 hypothetical protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CIK05_13540 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CIK05_08340 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CIK05_07865 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CIK05_07880 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CIK05_04785 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CIK05_13445 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CIK05_07200 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CIK05_03140 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CIK05_07195 methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D CIK05_04945 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:bdq00860] D CIK05_10185 hypothetical protein K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D CIK05_10175 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CIK05_10190 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CIK05_10180 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D CIK05_10160 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D CIK05_10155 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D CIK05_10150 hypothetical protein K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D CIK05_10145 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D CIK05_02015 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CIK05_07655 cytochrome aa3 controlling protein CtaA K02259 COX15; heme a synthase [EC:1.17.99.9] D CIK05_06835 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CIK05_15445 hypothetical protein K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20] D CIK05_01550 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D CIK05_04305 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bdq00130] D CIK05_02210 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D CIK05_02220 hypothetical protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D CIK05_02225 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D CIK05_02230 hypothetical protein K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D CIK05_02730 hypothetical protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D CIK05_04150 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D CIK05_02725 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CIK05_02750 hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CIK05_14675 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:bdq00900] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_06955 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D CIK05_06970 hypothetical protein K00869 MVK; mevalonate kinase [EC:2.7.1.36] D CIK05_06965 diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D CIK05_06950 type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D CIK05_14920 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CIK05_02745 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CIK05_15300 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:bdq00907] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_14765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CIK05_02260 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D CIK05_07165 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:bdq01053] D CIK05_02220 hypothetical protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D CIK05_05970 hypothetical protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:bdq00261] D CIK05_02640 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_07390 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D CIK05_02515 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CIK05_00545 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CIK05_00540 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:bdq00521] D CIK05_00055 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CIK05_13725 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CIK05_07165 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis [PATH:bdq00401] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D CIK05_08365 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CIK05_08360 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_11265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CIK05_08355 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D CIK05_03280 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites [PATH:bdq00997] D CIK05_01005 pyoverdine biosynthesis protein PvcA K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24] D CIK05_01010 pyoverdine biosynthesis protein PvcB K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:bdq00362] D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CIK05_11245 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D CIK05_11235 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D CIK05_12070 hypothetical protein K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CIK05_09170 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:bdq00625] D CIK05_08560 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation [PATH:bdq00623] D CIK05_09530 hypothetical protein K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1] C 00622 Xylene degradation [PATH:bdq00622] D CIK05_11245 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D CIK05_11235 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D CIK05_09255 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:bdq00643] D CIK05_14670 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D CIK05_02055 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D CIK05_02065 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:bdq00930] D CIK05_09250 fatty oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D CIK05_11235 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation D CIK05_12070 hypothetical protein K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:bdq03020] D CIK05_12385 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CIK05_12380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CIK05_12230 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CIK05_10205 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:bdq03010] D CIK05_09435 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CIK05_03965 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CIK05_15280 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CIK05_12325 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CIK05_12235 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CIK05_12275 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CIK05_00140 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CIK05_12370 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CIK05_12290 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CIK05_02535 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CIK05_12360 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CIK05_12240 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CIK05_12375 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CIK05_12245 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CIK05_12295 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CIK05_10280 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CIK05_08830 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CIK05_12310 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CIK05_03455 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CIK05_12335 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CIK05_10625 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CIK05_01700 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CIK05_12410 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CIK05_12340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CIK05_12355 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CIK05_12350 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CIK05_12300 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CIK05_12285 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CIK05_12400 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CIK05_00150 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CIK05_12405 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CIK05_12415 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CIK05_02530 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CIK05_12305 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CIK05_12265 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CIK05_12320 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CIK05_12225 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CIK05_12280 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CIK05_08805 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CIK05_06945 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CIK05_15675 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CIK05_12330 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CIK05_12345 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CIK05_03465 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CIK05_11595 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CIK05_15670 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CIK05_03460 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CIK05_12315 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CIK05_12270 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CIK05_00455 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CIK05_08375 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CIK05_06745 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CIK05_16020 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CIK05_06940 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CIK05_12250 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CIK05_03385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CIK05_03400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:bdq00970] D CIK05_03380 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CIK05_00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_05090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_04525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_00245 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CIK05_05505 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CIK05_07315 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CIK05_11765 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CIK05_06235 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CIK05_05240 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CIK05_12445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CIK05_09885 tRNA-His K14226 tRNA-His; tRNA His D CIK05_03390 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CIK05_13455 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_10330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_09745 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_06240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CIK05_08895 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_01730 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_10770 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_15470 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CIK05_03415 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CIK05_00415 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CIK05_12455 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CIK05_12440 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CIK05_12430 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CIK05_12450 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CIK05_08575 tRNA-Val K14237 tRNA-Val; tRNA Val D CIK05_00770 tRNA-Val K14237 tRNA-Val; tRNA Val D CIK05_09950 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CIK05_00495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CIK05_00490 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CIK05_00500 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CIK05_02550 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CIK05_13610 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CIK05_15715 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CIK05_04900 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CIK05_06885 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CIK05_00425 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CIK05_09945 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CIK05_07270 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_08990 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_04785 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CIK05_02400 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CIK05_14520 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CIK05_13860 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CIK05_09980 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CIK05_13185 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CIK05_12475 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CIK05_04165 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CIK05_06995 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CIK05_07000 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CIK05_04955 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CIK05_09025 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:bdq03060] D CIK05_12260 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CIK05_12425 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CIK05_03895 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CIK05_07595 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D CIK05_07600 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D CIK05_07590 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CIK05_16005 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CIK05_01970 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CIK05_08835 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CIK05_04930 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CIK05_07725 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D CIK05_15780 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D CIK05_15775 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D CIK05_03290 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_03295 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_03300 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_09240 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_13865 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_03100 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_10850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:bdq04122] D CIK05_07990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CIK05_03500 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CIK05_07995 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:bdq03018] D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CIK05_10275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CIK05_07015 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_04445 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_01190 ATP-dependent helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_02290 ATP-dependent helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_02350 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CIK05_04990 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CIK05_03740 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_04425 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_00465 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CIK05_04950 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D CIK05_07895 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_05440 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CIK05_00170 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CIK05_03760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CIK05_02280 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:bdq03030] D CIK05_15615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_03095 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_04470 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_08660 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CIK05_00870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CIK05_03905 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CIK05_06265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CIK05_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CIK05_00585 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CIK05_01710 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_12800 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CIK05_08800 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:bdq03410] D CIK05_02820 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CIK05_02115 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CIK05_02325 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CIK05_12525 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CIK05_07805 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CIK05_11920 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CIK05_14600 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_07605 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:bdq03420] D CIK05_15910 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CIK05_06630 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CIK05_15175 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CIK05_09940 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D CIK05_09935 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D CIK05_13745 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_06475 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:bdq03430] D CIK05_08060 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CIK05_05390 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D CIK05_10225 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CIK05_13745 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_06475 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_14930 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CIK05_14925 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CIK05_07605 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_08660 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CIK05_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CIK05_00870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CIK05_06265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CIK05_03905 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CIK05_15615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_03095 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_04470 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:bdq03440] D CIK05_07605 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_00015 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CIK05_12565 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CIK05_00860 recombination protein RecR K06187 recR; recombination protein RecR D CIK05_02600 recA; recombinase RecA K03553 recA; recombination protein RecA D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_06340 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CIK05_06345 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CIK05_06335 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CIK05_09960 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CIK05_08660 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CIK05_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CIK05_00870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CIK05_06265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CIK05_03905 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CIK05_15615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_03095 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_04470 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_15255 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:bdq03450] D CIK05_04355 Ku protein K10979 ku; DNA end-binding protein Ku D CIK05_04350 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:bdq03250] D CIK05_15030 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_15035 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:bdq02010] D CIK05_08595 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D CIK05_08600 hypothetical protein K02011 afuB; iron(III) transport system permease protein D CIK05_08605 ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CIK05_02830 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D CIK05_02835 hypothetical protein K02063 thiP; thiamine transport system permease protein D CIK05_02840 thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D CIK05_14075 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CIK05_12690 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CIK05_14065 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CIK05_12700 organic solvent ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CIK05_14070 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CIK05_12695 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CIK05_12755 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D CIK05_12745 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D CIK05_12740 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D CIK05_12750 hypothetical protein K23537 nupA; general nucleoside transport system ATP-binding protein D CIK05_07515 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D CIK05_04735 protein sphX K02040 pstS; phosphate transport system substrate-binding protein D CIK05_08430 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D CIK05_07050 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D CIK05_07055 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CIK05_07060 pstB; phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CIK05_02090 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_03325 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_12645 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_12635 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CIK05_12640 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D CIK05_13950 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D CIK05_13955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D CIK05_13960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D CIK05_13965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CIK05_13970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CIK05_11980 hypothetical protein K15580 oppA; oligopeptide transport system substrate-binding protein D CIK05_02135 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D CIK05_02140 dipeptide ABC transporter permease DppB K12369 dppB; dipeptide transport system permease protein D CIK05_14565 peptide ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein D CIK05_14560 peptide ABC transporter permease K13894 yejB; microcin C transport system permease protein D CIK05_14555 peptide ABC transporter permease K13895 yejE; microcin C transport system permease protein D CIK05_10610 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D CIK05_01360 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D CIK05_15070 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D CIK05_01365 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D CIK05_15075 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D CIK05_09790 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D CIK05_10490 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D CIK05_10485 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CIK05_06415 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D CIK05_04775 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D CIK05_12960 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CIK05_00685 hypothetical protein K09811 ftsX; cell division transport system permease protein D CIK05_00680 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CIK05_15180 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CIK05_02710 multidrug ABC transporter ATP-binding protein K05665 ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3] D CIK05_09670 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:bdq03070] D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_10075 gspD; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D D CIK05_10070 general secretion pathway protein GspC K02452 gspC; general secretion pathway protein C D CIK05_10085 type II secretion system protein GspF K02455 gspF; general secretion pathway protein F D CIK05_10090 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G D CIK05_10095 prepilin-type cleavage/methylation domain-containing protein K02457 gspH; general secretion pathway protein H D CIK05_10100 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I D CIK05_10110 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K D CIK05_10115 pilus assembly protein PilM K02461 gspL; general secretion pathway protein L D CIK05_10080 gspE; type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CIK05_07595 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D CIK05_07600 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D CIK05_12425 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CIK05_03895 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CIK05_12260 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CIK05_07590 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CIK05_16005 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CIK05_01970 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CIK05_04930 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CIK05_08835 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CIK05_07725 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D CIK05_15780 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D CIK05_15775 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:bdq02020] D CIK05_03790 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_13820 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_14335 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_10430 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_03785 DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_01895 hypothetical protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_07565 DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_04910 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CIK05_03225 hypothetical protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D CIK05_10635 phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D CIK05_04735 protein sphX K02040 pstS; phosphate transport system substrate-binding protein D CIK05_08430 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D CIK05_11755 serine protease MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CIK05_02855 flagellin FliC K02406 fliC; flagellin D CIK05_02860 flagellin FliC K02406 fliC; flagellin D CIK05_02870 flagellin FliC K02406 fliC; flagellin D CIK05_13385 flagellin FliC K02406 fliC; flagellin D CIK05_14365 flagellin FliC K02406 fliC; flagellin D CIK05_14370 flagellin FliC K02406 fliC; flagellin D CIK05_12530 flagellin FliC K02406 fliC; flagellin D CIK05_13665 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D CIK05_03080 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CIK05_13660 hypothetical protein K02556 motA; chemotaxis protein MotA D CIK05_11335 two-component sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CIK05_11330 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CIK05_11350 potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D CIK05_11345 kdpB; K(+)-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D CIK05_11340 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D CIK05_14485 response regulator K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D CIK05_07655 cytochrome aa3 controlling protein CtaA K02259 COX15; heme a synthase [EC:1.17.99.9] D CIK05_11400 hypothetical protein K02313 dnaA; chromosomal replication initiator protein D CIK05_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CIK05_02700 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CIK05_08185 hypothetical protein K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D CIK05_13550 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D CIK05_00640 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D CIK05_13590 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00635 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00630 pilus assembly protein TadA K02282 cpaE; pilus assembly protein CpaE D CIK05_13110 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_15790 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_13595 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_00625 hypothetical protein K12510 tadB; tight adherence protein B D CIK05_02445 pilus assembly protein TadC K12511 tadC; tight adherence protein C D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_12485 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D CIK05_12480 Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D CIK05_13825 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CIK05_12105 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CIK05_10435 sigma-54-dependent Fis family transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC D CIK05_01070 Short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_10400 hypothetical protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CIK05_10395 Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D CIK05_12955 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CIK05_05425 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D CIK05_01885 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_06495 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_08140 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_06515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_01880 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_06505 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_01875 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06510 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_09300 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01455 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01865 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01890 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_06500 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_12545 hypothetical protein K11443 divK; two-component system, cell cycle response regulator DivK D CIK05_11620 nucleotide-gated potassium channel protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_08705 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_04380 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_06375 hypothetical protein K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D CIK05_01165 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D CIK05_07075 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_07175 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CIK05_00350 hybrid sensor histidine kinase/response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D CIK05_05920 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D CIK05_03435 hypothetical protein K20976 hptB; histidine phosphotransfer protein HptB D CIK05_02680 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D CIK05_04730 hypothetical protein K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:bdq02024] D CIK05_11330 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CIK05_13950 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D CIK05_13955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D CIK05_13960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D CIK05_13965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CIK05_13970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CIK05_09355 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_12855 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_11620 nucleotide-gated potassium channel protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_08705 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_04380 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_14665 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CIK05_09050 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CIK05_11980 hypothetical protein K15580 oppA; oligopeptide transport system substrate-binding protein D CIK05_07745 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CIK05_04160 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CIK05_07740 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D CIK05_07735 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CIK05_02145 dipeptide ABC transporter permease DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CIK05_14440 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CIK05_07755 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CIK05_14445 peptide ABC transporter substrate-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CIK05_07750 peptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CIK05_16005 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CIK05_10690 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_07395 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_12425 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CIK05_03895 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CIK05_12260 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CIK05_07590 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CIK05_01970 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CIK05_04930 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CIK05_08835 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:bdq02030] D CIK05_08140 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_06515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_07515 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D CIK05_02135 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D CIK05_01875 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06510 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_01880 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_06505 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_09300 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01455 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01865 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_09305 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_12890 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_01870 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_01890 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_06500 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_01885 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_06495 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_14025 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CIK05_13715 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CIK05_13710 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CIK05_03080 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CIK05_13660 hypothetical protein K02556 motA; chemotaxis protein MotA D CIK05_03085 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:bdq02040] D CIK05_14035 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CIK05_14030 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CIK05_14025 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CIK05_14020 hypothetical protein K02411 fliH; flagellar assembly protein FliH D CIK05_14015 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CIK05_14010 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D CIK05_14000 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D CIK05_13720 flagellar protein FliL K02415 fliL; flagellar protein FliL D CIK05_04000 flagellar protein FliL K02415 fliL; flagellar protein FliL D CIK05_13715 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CIK05_13710 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CIK05_13705 polar flagellar assembly protein FliO K02418 fliO; flagellar protein FliO/FliZ D CIK05_13700 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CIK05_13695 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CIK05_13690 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CIK05_13680 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CIK05_13685 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CIK05_02660 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CIK05_14045 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CIK05_14040 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CIK05_13995 flagellar biosynthesis protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D CIK05_13985 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D CIK05_02650 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D CIK05_02655 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CIK05_02665 hypothetical protein K02393 flgH; flagellar L-ring protein FlgH D CIK05_02670 flgI; flagellar biosynthesis protein FlgA K02394 flgI; flagellar P-ring protein FlgI D CIK05_02675 flagellar biosynthesis protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D CIK05_02690 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CIK05_02695 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CIK05_02855 flagellin FliC K02406 fliC; flagellin D CIK05_02860 flagellin FliC K02406 fliC; flagellin D CIK05_02870 flagellin FliC K02406 fliC; flagellin D CIK05_13385 flagellin FliC K02406 fliC; flagellin D CIK05_14365 flagellin FliC K02406 fliC; flagellin D CIK05_14370 flagellin FliC K02406 fliC; flagellin D CIK05_12530 flagellin FliC K02406 fliC; flagellin D CIK05_02885 flagellar hook associated protein K02407 fliD; flagellar hook-associated protein 2 D CIK05_02890 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D CIK05_03080 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CIK05_13660 hypothetical protein K02556 motA; chemotaxis protein MotA D CIK05_03085 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CIK05_02680 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CIK05_01715 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CIK05_12955 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CIK05_13665 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:bdq04980] D CIK05_06835 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CIK05_07200 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:bdq01501] D CIK05_14220 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CIK05_15230 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CIK05_11980 hypothetical protein K15580 oppA; oligopeptide transport system substrate-binding protein D CIK05_12790 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_15170 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CIK05_06575 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CIK05_03180 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:bdq01502] D CIK05_02795 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_05910 hypothetical protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_12705 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CIK05_03220 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CIK05_03235 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CIK05_03250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bdq01503] D CIK05_11575 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CIK05_11755 serine protease MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CIK05_15030 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_15035 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_12790 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_10470 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:bdq01000] C 01001 Protein kinases [BR:bdq01001] D CIK05_12395 hypothetical protein K08869 ADCK; aarF domain-containing kinase D CIK05_12850 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D CIK05_03790 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_13820 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_14335 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_10430 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_11335 two-component sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CIK05_12485 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D CIK05_10400 hypothetical protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CIK05_00215 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_14130 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01460 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01465 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01620 two-component sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_02905 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01875 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06510 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06375 hypothetical protein K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D CIK05_00350 hybrid sensor histidine kinase/response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D CIK05_05920 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:bdq01009] D CIK05_05485 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_14400 serine/threonine-protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:bdq01002] D CIK05_09240 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_13865 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_03100 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_10850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CIK05_03340 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CIK05_10720 hypothetical protein K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D CIK05_08670 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CIK05_01475 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CIK05_06440 hypothetical protein K07010 K07010; putative glutamine amidotransferase D CIK05_05205 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CIK05_07850 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CIK05_14115 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CIK05_01915 protease K05520 yhbO; deglycase [EC:3.5.1.124] D CIK05_06280 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D CIK05_09635 hypothetical protein K07052 K07052; CAAX protease family protein D CIK05_10645 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CIK05_12875 peptidase M3 K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D CIK05_03685 hypothetical protein K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D CIK05_12180 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D CIK05_03125 carboxypeptidase K05996 cpt; carboxypeptidase T [EC:3.4.17.18] D CIK05_15795 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D CIK05_00735 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CIK05_10705 aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CIK05_05480 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CIK05_05590 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CIK05_14905 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CIK05_03680 hypothetical protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CIK05_07425 aminopeptidase K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10] D CIK05_13475 aminopeptidase K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10] D CIK05_14420 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CIK05_07950 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CIK05_03640 protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D CIK05_15310 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CIK05_14290 hypothetical protein K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33] D CIK05_05775 trypsin K01312 PRSS1_2_3; trypsin [EC:3.4.21.4] D CIK05_11755 serine protease MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CIK05_12055 hypothetical protein K13274 wprA; cell wall-associated protease [EC:3.4.21.-] D CIK05_05405 serine protease/subtilase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D CIK05_09475 serine protease K13275 isp; major intracellular serine protease [EC:3.4.21.-] D CIK05_10690 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_07395 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_04685 serine protease K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D CIK05_14840 S9 family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D CIK05_03105 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D CIK05_00740 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CIK05_00755 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CIK05_15830 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CIK05_04365 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CIK05_02100 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CIK05_03290 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_03295 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_03300 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CIK05_02245 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CIK05_00695 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CIK05_14630 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CIK05_03620 tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CIK05_03970 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D CIK05_07760 protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-] D CIK05_03980 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D CIK05_08040 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CIK05_03865 TldD/PmbA family protein K03592 pmbA; PmbA protein D CIK05_03860 TldD/PmbA family protein K03568 tldD; TldD protein D CIK05_01930 hypothetical protein K06894 yfhM; alpha-2-macroglobulin C 01003 Glycosyltransferases [BR:bdq01003] D CIK05_06975 dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D CIK05_07105 hypothetical protein K20151 fucT; alpha(1,3/1,4) fucosyltransferase [EC:2.4.1.65 2.4.1.152] D CIK05_15065 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_04465 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_01935 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CIK05_13800 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CIK05_15170 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CIK05_07180 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:bdq01005] D CIK05_10470 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CIK05_10460 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CIK05_06350 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CIK05_03525 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CIK05_12895 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CIK05_10455 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CIK05_10450 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CIK05_06785 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CIK05_12190 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CIK05_13045 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CIK05_13020 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CIK05_13035 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CIK05_13335 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D CIK05_03040 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D CIK05_10440 glycosyltransferase family 9 protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CIK05_07040 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D CIK05_07070 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CIK05_14635 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D CIK05_07180 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bdq01011] D CIK05_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CIK05_03260 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CIK05_03255 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CIK05_00520 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_03240 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CIK05_03215 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CIK05_02795 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_05910 hypothetical protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CIK05_12705 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CIK05_09760 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CIK05_08040 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CIK05_03235 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CIK05_03250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CIK05_11545 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CIK05_10620 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CIK05_01740 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CIK05_15170 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CIK05_13800 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CIK05_01935 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CIK05_06575 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CIK05_03180 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CIK05_14595 penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CIK05_03105 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D CIK05_15065 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_04465 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CIK05_06280 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D CIK05_05205 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CIK05_11615 hypothetical protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CIK05_12045 hypothetical protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CIK05_05410 hypothetical protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CIK05_02645 murein transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D CIK05_03110 lytic murein transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D CIK05_00800 lytic murein transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D CIK05_14110 hypothetical protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D CIK05_15120 endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D CIK05_09920 hypothetical protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D CIK05_11575 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:bdq01004] D CIK05_08365 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CIK05_08370 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_13215 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_01565 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_03550 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CIK05_08350 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CIK05_08360 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_11265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CIK05_14190 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CIK05_09320 acyl-CoA thioesterase K12500 tesC; thioesterase III [EC:3.1.2.-] D CIK05_14745 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D CIK05_08185 hypothetical protein K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D CIK05_13885 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CIK05_09355 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_12855 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_09220 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CIK05_04590 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:bdq01008] D CIK05_05970 hypothetical protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] C 01006 Prenyltransferases [BR:bdq01006] D CIK05_14920 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CIK05_02745 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CIK05_15300 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CIK05_10220 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CIK05_02725 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CIK05_02750 hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CIK05_02015 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:bdq01007] D CIK05_09950 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CIK05_04955 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CIK05_09025 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CIK05_09945 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CIK05_13185 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CIK05_07270 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_08990 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_13860 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CIK05_02400 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CIK05_14520 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CIK05_09980 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CIK05_13610 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CIK05_15715 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CIK05_04165 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CIK05_04900 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CIK05_00425 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CIK05_12475 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CIK05_06885 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CIK05_02550 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CIK05_06995 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CIK05_07000 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CIK05_02925 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_13235 hypothetical protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CIK05_03950 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CIK05_00995 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CIK05_15140 acetylornithine aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D CIK05_10175 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CIK05_13485 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CIK05_14150 hypothetical protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D CIK05_12185 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:bdq00194] D CIK05_15930 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CIK05_15935 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CIK05_15940 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CIK05_15945 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CIK05_15950 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CIK05_15955 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CIK05_15960 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CIK05_00050 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CIK05_00045 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:bdq03000] D CIK05_11825 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CIK05_09015 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D CIK05_11960 hypothetical protein K07506 K07506; AraC family transcriptional regulator D CIK05_02075 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CIK05_04110 hypothetical protein K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D CIK05_04030 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D CIK05_01265 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CIK05_09405 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D CIK05_09645 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CIK05_09295 DNA-binding response regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D CIK05_06625 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CIK05_12770 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CIK05_11620 nucleotide-gated potassium channel protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_08705 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_04380 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CIK05_14990 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D CIK05_10845 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CIK05_04760 biotin synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CIK05_00580 site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CIK05_05325 L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CIK05_10950 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CIK05_15970 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CIK05_09955 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D CIK05_15820 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_15825 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D CIK05_14580 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_04060 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:bdq03021] D CIK05_12230 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CIK05_12385 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CIK05_12380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CIK05_10205 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CIK05_01715 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CIK05_13620 RNA polymerase subunit sigma K03089 rpoH; RNA polymerase sigma-32 factor D CIK05_12955 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CIK05_13665 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D CIK05_10300 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D CIK05_04055 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CIK05_12420 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D CIK05_02765 sigmaB regulation protein RsbU K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D CIK05_05815 hypothetical protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D CIK05_15820 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_15825 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D CIK05_14580 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_07685 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D CIK05_04185 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D CIK05_00465 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CIK05_12390 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:bdq03019] D CIK05_15690 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D CIK05_08005 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CIK05_04950 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D CIK05_07895 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D CIK05_02350 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CIK05_05495 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CIK05_12675 HD family phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D CIK05_07015 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_04445 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_01190 ATP-dependent helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_02290 ATP-dependent helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CIK05_04990 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CIK05_03740 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_04425 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CIK05_10275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CIK05_00465 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CIK05_13945 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CIK05_05440 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CIK05_00170 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CIK05_03760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CIK05_02280 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D CIK05_02700 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CIK05_12660 hypothetical protein K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:bdq03011] D CIK05_09435 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CIK05_03965 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CIK05_15280 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CIK05_12325 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CIK05_12235 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CIK05_12275 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CIK05_00140 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CIK05_12370 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CIK05_12290 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CIK05_02535 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CIK05_12360 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CIK05_12240 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CIK05_12375 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CIK05_12245 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CIK05_12295 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CIK05_10280 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CIK05_08830 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CIK05_12310 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CIK05_03455 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CIK05_12335 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CIK05_10625 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CIK05_01700 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CIK05_12410 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CIK05_12340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CIK05_12355 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CIK05_12350 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CIK05_12300 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CIK05_12285 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CIK05_00150 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CIK05_12405 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CIK05_12415 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CIK05_12400 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CIK05_02530 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CIK05_12305 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CIK05_12265 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CIK05_12320 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CIK05_12225 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CIK05_12280 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CIK05_08805 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CIK05_06945 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CIK05_15675 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CIK05_12330 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CIK05_12345 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CIK05_03465 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CIK05_15670 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CIK05_03460 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CIK05_12315 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CIK05_12270 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CIK05_00455 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CIK05_08375 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CIK05_06745 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CIK05_16020 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CIK05_06940 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CIK05_12250 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CIK05_11595 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CIK05_03400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CIK05_03385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C 03009 Ribosome biogenesis [BR:bdq03009] D CIK05_08005 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CIK05_05495 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CIK05_03795 hypothetical protein K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-] D CIK05_08010 GTPase Era K03595 era; GTPase D CIK05_15665 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D CIK05_15820 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_15825 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D CIK05_14580 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D CIK05_10300 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D CIK05_04055 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CIK05_12420 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D CIK05_02975 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CIK05_04070 RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CIK05_02915 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CIK05_03050 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CIK05_06990 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_15985 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_14575 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_03170 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CIK05_12655 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CIK05_02755 16S rRNA methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D CIK05_14915 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CIK05_12465 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CIK05_05755 50S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D CIK05_15655 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CIK05_05065 RNA pseudouridine synthase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CIK05_13530 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CIK05_05640 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CIK05_14865 hypothetical protein K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264] D CIK05_03490 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D CIK05_03000 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D CIK05_13315 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CIK05_15585 hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CIK05_08525 hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CIK05_05760 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CIK05_03070 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CIK05_06525 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CIK05_00595 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CIK05_15330 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CIK05_10045 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CIK05_01765 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CIK05_08240 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D CIK05_10310 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D CIK05_08820 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D CIK05_15640 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D CIK05_03055 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CIK05_15690 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D CIK05_09630 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D CIK05_04990 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CIK05_08150 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CIK05_08015 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D CIK05_09265 hflX; GTPase HflX K03665 hflX; GTPase D CIK05_01185 hflX; GTPase HflX K03665 hflX; GTPase D CIK05_14175 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CIK05_10200 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CIK05_10290 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D CIK05_10305 ribosome maturation factor K09748 rimP; ribosome maturation factor RimP D CIK05_06155 hypothetical protein K14761 rlbA; ribosome-associated protein D CIK05_10500 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D CIK05_03265 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D CIK05_11610 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D CIK05_08380 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:bdq03016] D CIK05_07480 MBL fold metallo-hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11] D CIK05_12475 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CIK05_13860 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CIK05_14520 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CIK05_07270 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_08990 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CIK05_13185 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CIK05_09980 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CIK05_13610 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CIK05_02550 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CIK05_15715 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CIK05_04900 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CIK05_06885 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CIK05_00425 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CIK05_09945 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CIK05_02400 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CIK05_04165 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CIK05_06995 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CIK05_07000 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CIK05_04955 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CIK05_09025 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CIK05_02780 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CIK05_14510 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CIK05_02370 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D CIK05_07260 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D CIK05_02525 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CIK05_10285 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CIK05_07990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CIK05_14175 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CIK05_10220 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CIK05_15995 trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CIK05_15990 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CIK05_16015 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CIK05_11580 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D CIK05_12460 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D CIK05_06550 energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D CIK05_09950 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CIK05_01690 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CIK05_05460 nitrogen fixation protein NifR K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CIK05_15085 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CIK05_06445 dihydrouridine synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D CIK05_08695 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CIK05_08000 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D CIK05_14095 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D CIK05_08815 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CIK05_05055 RNA methylase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D CIK05_01735 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D CIK05_01960 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CIK05_06985 TrmH family RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D CIK05_05735 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D CIK05_05760 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CIK05_07995 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CIK05_08555 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CIK05_04995 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D CIK05_07550 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CIK05_07610 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CIK05_09130 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CIK05_09135 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CIK05_00575 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CIK05_03230 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CIK05_09315 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CIK05_07585 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CIK05_07945 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CIK05_15315 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CIK05_02970 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CIK05_07975 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CIK05_10015 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D CIK05_02350 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CIK05_10275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:bdq03012] D CIK05_01675 hypothetical protein K03113 EIF1; translation initiation factor 1 D CIK05_10295 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CIK05_06890 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CIK05_02130 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CIK05_11700 glycosyl transferase family 1 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CIK05_15285 elongation factor Ts K02357 tsf; elongation factor Ts D CIK05_12435 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D CIK05_03735 elongation factor G K02355 fusA; elongation factor G D CIK05_12365 fusA; elongation factor G K02355 fusA; elongation factor G D CIK05_00450 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CIK05_15295 ribosome recycling factor K02838 frr; ribosome recycling factor D CIK05_00445 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D CIK05_11605 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CIK05_03535 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CIK05_15400 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CIK05_06325 efp; elongation factor P K02356 efp; elongation factor P D CIK05_13395 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D CIK05_10495 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D CIK05_08850 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D CIK05_08565 aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:bdq03110] D CIK05_05415 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D CIK05_12515 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D CIK05_00745 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CIK05_05440 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CIK05_06540 Hsp70 family protein K04046 yegD; hypothetical chaperone protein D CIK05_00170 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CIK05_15810 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CIK05_05435 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CIK05_05340 heat-shock protein Hsp33 K04083 hslO; molecular chaperone Hsp33 D CIK05_15805 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D CIK05_04370 heat-shock protein K13993 HSP20; HSP20 family protein D CIK05_13785 co-chaperone GroES K04078 groES; chaperonin GroES D CIK05_00165 co-chaperone GroES K04078 groES; chaperonin GroES D CIK05_11755 serine protease MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CIK05_14420 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CIK05_07950 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CIK05_00045 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CIK05_12055 hypothetical protein K13274 wprA; cell wall-associated protease [EC:3.4.21.-] D CIK05_05405 serine protease/subtilase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D CIK05_09475 serine protease K13275 isp; major intracellular serine protease [EC:3.4.21.-] D CIK05_10690 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_07395 serine protease K14645 K14645; serine protease [EC:3.4.21.-] D CIK05_04685 serine protease K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D CIK05_15030 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_15035 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_06590 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D CIK05_00075 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D CIK05_10730 hypothetical protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D CIK05_14200 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D CIK05_15435 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D CIK05_07245 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D CIK05_00065 survival protein SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D CIK05_06425 trxA; thioredoxin K03671 TXN; thioredoxin D CIK05_04340 trxA; thioredoxin K03671 TXN; thioredoxin D CIK05_06430 glutaredoxin K03676 grxC; glutaredoxin 3 D CIK05_04635 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D CIK05_00975 glutaredoxin K07390 grxD; monothiol glutaredoxin D CIK05_03075 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] C 04131 Membrane trafficking [BR:bdq04131] D CIK05_15580 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CIK05_05105 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D CIK05_03915 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CIK05_04855 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_08740 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CIK05_05745 permease K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:bdq03032] D CIK05_12800 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CIK05_11825 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CIK05_14680 RRM3/PIF1 helicase-like protein K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3] D CIK05_13925 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_08755 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_07005 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D CIK05_13380 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D CIK05_11400 hypothetical protein K02313 dnaA; chromosomal replication initiator protein D CIK05_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CIK05_00585 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CIK05_01710 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_08660 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CIK05_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CIK05_06265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CIK05_03905 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CIK05_15615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_03095 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_04470 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_00870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CIK05_08800 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CIK05_00025 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CIK05_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CIK05_04670 DNA topoisomerase VI K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D CIK05_04665 DNA topoisomerase VI subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D CIK05_03610 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:bdq03036] D CIK05_11825 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CIK05_08005 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CIK05_13925 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_08755 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_07005 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D CIK05_13380 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D CIK05_11400 hypothetical protein K02313 dnaA; chromosomal replication initiator protein D CIK05_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CIK05_07250 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D CIK05_00580 site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CIK05_04920 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D CIK05_08260 hypothetical protein K05896 scpA; segregation and condensation protein A D CIK05_08265 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D CIK05_12905 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CIK05_00680 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CIK05_03180 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CIK05_00570 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CIK05_12910 cell division protein K03589 ftsQ; cell division protein FtsQ D CIK05_03245 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D CIK05_00685 hypothetical protein K09811 ftsX; cell division transport system permease protein D CIK05_12900 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CIK05_11575 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CIK05_02425 cell division protein DivIVA K04074 divIVA; cell division initiation protein D CIK05_07275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_01610 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_06585 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CIK05_06570 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CIK05_15975 chromosome partitioning protein K03496 parA; chromosome partitioning protein D CIK05_15970 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CIK05_15990 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CIK05_06990 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_15985 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_14575 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CIK05_14095 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D CIK05_12560 site-specific recombinase K03733 xerC; integrase/recombinase XerC D CIK05_07305 integrase K04763 xerD; integrase/recombinase XerD D CIK05_08490 hypothetical protein K04763 xerD; integrase/recombinase XerD D CIK05_11645 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CIK05_13050 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:bdq03400] D CIK05_05130 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CIK05_07665 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CIK05_02115 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CIK05_12525 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CIK05_02325 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CIK05_02820 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CIK05_13365 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CIK05_07635 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CIK05_10265 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CIK05_07805 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CIK05_11920 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CIK05_14600 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CIK05_07605 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CIK05_00505 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CIK05_13070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CIK05_06630 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CIK05_15175 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CIK05_09940 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D CIK05_09935 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D CIK05_13745 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_06475 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CIK05_12385 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CIK05_12380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CIK05_12230 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CIK05_10205 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CIK05_15910 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CIK05_08060 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CIK05_05390 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D CIK05_10225 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CIK05_14930 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CIK05_14925 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CIK05_08660 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CIK05_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CIK05_06265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CIK05_03905 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CIK05_15615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_03095 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_04470 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CIK05_00870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_02600 recA; recombinase RecA K03553 recA; recombination protein RecA D CIK05_06340 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CIK05_06345 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CIK05_06335 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CIK05_15255 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CIK05_00015 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CIK05_09960 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CIK05_12565 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CIK05_00860 recombination protein RecR K06187 recR; recombination protein RecR D CIK05_12885 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CIK05_12820 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D CIK05_12825 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D CIK05_01135 ATP-dependent helicase K19789 radD; DNA repair protein RadD D CIK05_04355 Ku protein K10979 ku; DNA end-binding protein Ku D CIK05_04350 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D CIK05_00025 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CIK05_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CIK05_03610 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CIK05_13925 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_08755 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CIK05_00580 site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CIK05_07005 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D CIK05_13380 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D CIK05_03740 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_04425 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CIK05_05255 DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CIK05_02100 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CIK05_11385 hypothetical protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D CIK05_05005 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08290 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CIK05_08285 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CIK05_07680 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:bdq03029] D CIK05_10295 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CIK05_06890 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CIK05_15285 elongation factor Ts K02357 tsf; elongation factor Ts D CIK05_12435 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D CIK05_03735 elongation factor G K02355 fusA; elongation factor G D CIK05_12365 fusA; elongation factor G K02355 fusA; elongation factor G D CIK05_08010 GTPase Era K03595 era; GTPase D CIK05_04955 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CIK05_14520 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CIK05_13610 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CIK05_04900 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CIK05_13185 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CIK05_00495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CIK05_00490 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CIK05_00500 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CIK05_03795 hypothetical protein K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-] D CIK05_14680 RRM3/PIF1 helicase-like protein K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3] D CIK05_10130 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CIK05_10480 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D CIK05_06310 hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D CIK05_05440 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CIK05_15805 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D CIK05_00170 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CIK05_13785 co-chaperone GroES K04078 groES; chaperonin GroES D CIK05_00165 co-chaperone GroES K04078 groES; chaperonin GroES D CIK05_15810 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CIK05_05435 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CIK05_07990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CIK05_04635 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D CIK05_00975 glutaredoxin K07390 grxD; monothiol glutaredoxin D CIK05_14965 NifU family protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial D CIK05_11645 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CIK05_02015 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CIK05_07655 cytochrome aa3 controlling protein CtaA K02259 COX15; heme a synthase [EC:1.17.99.9] D CIK05_16005 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CIK05_01990 SCO family protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:bdq02000] D CIK05_15180 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CIK05_02710 multidrug ABC transporter ATP-binding protein K05665 ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3] D CIK05_09670 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CIK05_11480 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D CIK05_08595 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D CIK05_08600 hypothetical protein K02011 afuB; iron(III) transport system permease protein D CIK05_08605 ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CIK05_02830 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D CIK05_02835 hypothetical protein K02063 thiP; thiamine transport system permease protein D CIK05_02840 thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D CIK05_07515 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D CIK05_12755 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D CIK05_12745 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D CIK05_12740 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D CIK05_12750 hypothetical protein K23537 nupA; general nucleoside transport system ATP-binding protein D CIK05_14075 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CIK05_12690 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CIK05_14065 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CIK05_12700 organic solvent ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CIK05_14070 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CIK05_12695 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CIK05_04735 protein sphX K02040 pstS; phosphate transport system substrate-binding protein D CIK05_08430 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D CIK05_07050 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D CIK05_07055 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CIK05_07060 pstB; phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CIK05_02090 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_03325 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_12645 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CIK05_12635 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CIK05_12640 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D CIK05_13950 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D CIK05_13955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D CIK05_13960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D CIK05_13965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CIK05_13970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CIK05_11980 hypothetical protein K15580 oppA; oligopeptide transport system substrate-binding protein D CIK05_02135 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D CIK05_02140 dipeptide ABC transporter permease DppB K12369 dppB; dipeptide transport system permease protein D CIK05_07745 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CIK05_04160 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CIK05_07740 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D CIK05_07735 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CIK05_02145 dipeptide ABC transporter permease DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CIK05_14440 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CIK05_07755 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CIK05_14445 peptide ABC transporter substrate-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CIK05_07750 peptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CIK05_14565 peptide ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein D CIK05_14560 peptide ABC transporter permease K13894 yejB; microcin C transport system permease protein D CIK05_14555 peptide ABC transporter permease K13895 yejE; microcin C transport system permease protein D CIK05_10610 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D CIK05_12005 hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CIK05_12010 hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein D CIK05_15420 hypothetical protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D CIK05_15415 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D CIK05_06415 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D CIK05_04775 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D CIK05_12960 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CIK05_01360 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D CIK05_15070 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D CIK05_01365 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D CIK05_15075 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D CIK05_03835 ABC transporter permease K25151 gldF; gliding motility-associated transport system permease protein D CIK05_03830 MFS transporter K25152 gldA; gliding motility-associated transport system ATP-binding protein D CIK05_03840 hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component D CIK05_09790 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D CIK05_10490 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D CIK05_10485 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CIK05_00685 hypothetical protein K09811 ftsX; cell division transport system permease protein D CIK05_00680 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CIK05_03195 hypothetical protein K25154 evrC; viologen exporter family transport system permease protein D CIK05_03200 ABC transporter permease K25155 evrB; viologen exporter family transport system permease protein D CIK05_03205 daunorubicin ABC transporter ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein D CIK05_08840 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D CIK05_08845 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CIK05_03330 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CIK05_14180 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D CIK05_04180 peptide ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D CIK05_03580 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D CIK05_03590 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D CIK05_14185 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CIK05_04175 methionine ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CIK05_03575 hypothetical protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CIK05_14980 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D CIK05_14220 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CIK05_01295 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D CIK05_02200 MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D CIK05_05745 permease K06902 UMF1; MFS transporter, UMF1 family D CIK05_10380 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D CIK05_05585 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_01840 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_10765 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CIK05_11720 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D CIK05_11725 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D CIK05_05215 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D CIK05_11550 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein D CIK05_10680 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D CIK05_03080 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CIK05_13660 hypothetical protein K02556 motA; chemotaxis protein MotA D CIK05_03085 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CIK05_02480 tolQ protein K03561 exbB; biopolymer transport protein ExbB D CIK05_12980 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D CIK05_10550 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D CIK05_11680 hypothetical protein K03561 exbB; biopolymer transport protein ExbB D CIK05_02485 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D CIK05_15010 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D CIK05_15015 protein TolR K03560 tolR; biopolymer transport protein TolR D CIK05_10640 hypothetical protein K03284 corA; magnesium transporter D CIK05_05500 hypothetical protein K08364 merP; periplasmic mercuric ion binding protein D CIK05_11000 heavy metal transporter K08364 merP; periplasmic mercuric ion binding protein D CIK05_07225 heavy metal transporter K08364 merP; periplasmic mercuric ion binding protein D CIK05_01355 hypothetical protein K24915 TMEM175; TMEM175 potassium channel family protein D CIK05_13495 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CIK05_03700 Mg2+ and Co2+ transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CIK05_08135 hypothetical protein K05517 tsx; nucleoside-specific channel-forming protein D CIK05_13880 hypothetical protein K16092 btuB; vitamin B12 transporter D CIK05_11050 hypothetical protein K15725 czcC; outer membrane protein, heavy metal efflux system D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_13520 hypothetical protein K20987 pslD; polysaccharide biosynthesis/export protein PslD D CIK05_10480 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D CIK05_06310 hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D CIK05_08410 hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB D CIK05_15150 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D CIK05_06315 hypothetical protein K09800 tamB; translocation and assembly module TamB D CIK05_11520 hypothetical protein K21449 ata; trimeric autotransporter adhesin D CIK05_11530 hypothetical protein K21449 ata; trimeric autotransporter adhesin D CIK05_04210 hypothetical protein K21449 ata; trimeric autotransporter adhesin D CIK05_06485 hypothetical protein K21449 ata; trimeric autotransporter adhesin D CIK05_08785 hypothetical protein K04744 lptD; LPS-assembly protein D CIK05_04195 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D CIK05_11040 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D CIK05_12790 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CIK05_12630 hypothetical protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D CIK05_12130 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D CIK05_09050 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CIK05_14660 ionic transporter y4hA K07300 chaA; Ca2+:H+ antiporter D CIK05_03420 potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D CIK05_09835 hypothetical protein K26735 KEA4_5_6; K+:H+ antiporter D CIK05_08105 chloride channel protein K03281 clcA; chloride channel protein, CIC family D CIK05_09625 chromate transporter K07240 chrA; chromate transporter D CIK05_07630 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D CIK05_10620 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CIK05_01740 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CIK05_05535 hypothetical protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D CIK05_05110 hypothetical protein K26605 azlC; branched chain amino acid efflux pump D CIK05_05115 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D CIK05_06110 iron transporter K22736 VIT; vacuolar iron transporter family protein D CIK05_03245 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D CIK05_05105 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D CIK05_11175 hypothetical protein K07243 FTR; high-affinity iron transporter D CIK05_15855 hypothetical protein K07243 FTR; high-affinity iron transporter D CIK05_10870 FTR1 family iron permease K07243 FTR; high-affinity iron transporter D CIK05_08860 hypothetical protein K03832 tonB; periplasmic protein TonB D CIK05_02955 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D CIK05_15020 hypothetical protein K03646 tolA; colicin import membrane protein D CIK05_11560 hypothetical protein K03646 tolA; colicin import membrane protein D CIK05_15025 translocation protein TolB K03641 tolB; TolB protein D CIK05_07235 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D CIK05_02195 hypothetical protein K03543 emrA; membrane fusion protein, multidrug efflux system D CIK05_09675 macrolide transporter K13888 macA; membrane fusion protein, macrolide-specific efflux system D CIK05_10390 hypothetical protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:bdq02044] D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein D CIK05_10070 general secretion pathway protein GspC K02452 gspC; general secretion pathway protein C D CIK05_10075 gspD; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D D CIK05_10080 gspE; type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CIK05_10085 type II secretion system protein GspF K02455 gspF; general secretion pathway protein F D CIK05_10090 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G D CIK05_10095 prepilin-type cleavage/methylation domain-containing protein K02457 gspH; general secretion pathway protein H D CIK05_10100 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I D CIK05_10110 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K D CIK05_10115 pilus assembly protein PilM K02461 gspL; general secretion pathway protein L D CIK05_03340 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CIK05_05425 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D CIK05_10415 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D CIK05_10405 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D CIK05_03345 fimbrial assembly protein K02662 pilM; type IV pilus assembly protein PilM D CIK05_03350 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN D CIK05_03365 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D CIK05_10410 hypothetical protein K02669 pilT; twitching motility protein PilT D CIK05_15695 type IV pili twitching motility protein PilT K02669 pilT; twitching motility protein PilT D CIK05_00640 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D CIK05_13590 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00635 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00630 pilus assembly protein TadA K02282 cpaE; pilus assembly protein CpaE D CIK05_13110 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_15790 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_13595 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_00625 hypothetical protein K12510 tadB; tight adherence protein B D CIK05_02445 pilus assembly protein TadC K12511 tadC; tight adherence protein C D CIK05_13550 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D CIK05_10805 hypothetical protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CIK05_06390 hypothetical protein K02238 comEC; competence protein ComEC D CIK05_13680 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CIK05_13685 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CIK05_14030 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CIK05_14020 hypothetical protein K02411 fliH; flagellar assembly protein FliH D CIK05_14015 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CIK05_13710 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CIK05_13705 polar flagellar assembly protein FliO K02418 fliO; flagellar protein FliO/FliZ D CIK05_13700 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CIK05_13695 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CIK05_13690 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CIK05_01970 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CIK05_07595 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D CIK05_12425 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CIK05_07600 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D CIK05_03895 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CIK05_12260 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CIK05_08835 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CIK05_04930 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CIK05_07590 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CIK05_16005 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CIK05_07725 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D CIK05_15780 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D CIK05_15775 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:bdq02042] D CIK05_13495 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CIK05_03700 Mg2+ and Co2+ transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CIK05_00185 hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:bdq02022] D CIK05_03790 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_13820 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_14335 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_10430 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CIK05_03785 DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_01895 hypothetical protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_07565 DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CIK05_04910 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CIK05_11335 two-component sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CIK05_11330 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CIK05_14485 response regulator K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D CIK05_08625 response regulator K02483 K02483; two-component system, OmpR family, response regulator D CIK05_07465 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D CIK05_12485 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D CIK05_12480 Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D CIK05_13825 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CIK05_12105 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CIK05_10435 sigma-54-dependent Fis family transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC D CIK05_10400 hypothetical protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CIK05_10395 Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D CIK05_00215 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_14130 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01460 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01465 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01620 two-component sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_02905 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D CIK05_01875 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06510 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_09300 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01455 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01865 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01890 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_06500 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_12545 hypothetical protein K11443 divK; two-component system, cell cycle response regulator DivK D CIK05_06375 hypothetical protein K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D CIK05_00350 hybrid sensor histidine kinase/response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D CIK05_05920 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D CIK05_03435 hypothetical protein K20976 hptB; histidine phosphotransfer protein HptB C 02035 Bacterial motility proteins [BR:bdq02035] D CIK05_01875 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_06510 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CIK05_01880 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_06505 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CIK05_09305 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_12890 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_01870 hypothetical protein K03409 cheX; chemotaxis protein CheX D CIK05_01885 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_06495 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CIK05_01890 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_06500 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CIK05_09300 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01455 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_01865 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CIK05_08140 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_06515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CIK05_14020 hypothetical protein K02411 fliH; flagellar assembly protein FliH D CIK05_14015 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CIK05_14010 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D CIK05_13705 polar flagellar assembly protein FliO K02418 fliO; flagellar protein FliO/FliZ D CIK05_13700 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CIK05_13695 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CIK05_13690 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CIK05_13680 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CIK05_13685 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CIK05_14025 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CIK05_13715 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CIK05_13710 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CIK05_14030 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CIK05_02670 flgI; flagellar biosynthesis protein FlgA K02394 flgI; flagellar P-ring protein FlgI D CIK05_02660 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CIK05_02665 hypothetical protein K02393 flgH; flagellar L-ring protein FlgH D CIK05_13720 flagellar protein FliL K02415 fliL; flagellar protein FliL D CIK05_04000 flagellar protein FliL K02415 fliL; flagellar protein FliL D CIK05_14035 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CIK05_14000 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D CIK05_14045 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CIK05_14040 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CIK05_13995 flagellar biosynthesis protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D CIK05_02650 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D CIK05_02655 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CIK05_02675 flagellar biosynthesis protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D CIK05_13985 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D CIK05_02690 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CIK05_02695 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CIK05_02855 flagellin FliC K02406 fliC; flagellin D CIK05_02860 flagellin FliC K02406 fliC; flagellin D CIK05_02870 flagellin FliC K02406 fliC; flagellin D CIK05_13385 flagellin FliC K02406 fliC; flagellin D CIK05_14365 flagellin FliC K02406 fliC; flagellin D CIK05_14370 flagellin FliC K02406 fliC; flagellin D CIK05_12530 flagellin FliC K02406 fliC; flagellin D CIK05_02885 flagellar hook associated protein K02407 fliD; flagellar hook-associated protein 2 D CIK05_02890 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D CIK05_13665 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D CIK05_03080 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CIK05_13660 hypothetical protein K02556 motA; chemotaxis protein MotA D CIK05_03085 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CIK05_02705 flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW D CIK05_02680 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CIK05_13675 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D CIK05_15320 hypothetical protein K04562 flhG; flagellar biosynthesis protein FlhG D CIK05_13670 flagellar biosynthesis switch protein K04562 flhG; flagellar biosynthesis protein FlhG D CIK05_10395 Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D CIK05_10400 hypothetical protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CIK05_10410 hypothetical protein K02669 pilT; twitching motility protein PilT D CIK05_15695 type IV pili twitching motility protein PilT K02669 pilT; twitching motility protein PilT D CIK05_05425 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D CIK05_10415 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D CIK05_10405 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D CIK05_03340 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CIK05_03365 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D CIK05_03350 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN D CIK05_03345 fimbrial assembly protein K02662 pilM; type IV pilus assembly protein PilM D CIK05_13550 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D CIK05_00640 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D CIK05_13590 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00635 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D CIK05_00630 pilus assembly protein TadA K02282 cpaE; pilus assembly protein CpaE D CIK05_13110 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_15790 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CIK05_13595 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:bdq04812] D CIK05_07275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_01610 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_12900 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CIK05_12905 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CIK05_15975 chromosome partitioning protein K03496 parA; chromosome partitioning protein D CIK05_15970 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:bdq04147] D CIK05_13095 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CIK05_03915 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CIK05_08740 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CIK05_15030 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_15035 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CIK05_00170 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CIK05_05440 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CIK05_07080 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CIK05_09755 guanosine monophosphate reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CIK05_08675 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CIK05_12435 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D CIK05_02780 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CIK05_09355 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_12855 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CIK05_08715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_14350 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CIK05_05485 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CIK05_12255 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CIK05_12945 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CIK05_15515 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CIK05_04890 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CIK05_05035 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CIK05_10190 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CIK05_14675 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D CIK05_04605 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_06250 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CIK05_07880 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CIK05_05775 trypsin K01312 PRSS1_2_3; trypsin [EC:3.4.21.4] D CIK05_04840 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_13205 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CIK05_00085 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D CIK05_13355 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D CIK05_03925 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CIK05_04855 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CIK05_05025 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein D CIK05_11440 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:bdq02048] D CIK05_11825 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CIK05_04650 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D CIK05_11835 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D CIK05_11830 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D CIK05_12900 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CIK05_07275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_01610 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D CIK05_07990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:bdq01504] D CIK05_07110 chloramphenicol acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D CIK05_00270 hypothetical protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-] D CIK05_12790 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CIK05_01100 hypothetical protein K12340 tolC; outer membrane protein D CIK05_09680 TolC family protein K12340 tolC; outer membrane protein D CIK05_10970 hypothetical protein K12340 tolC; outer membrane protein D CIK05_02190 TolC family protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:bdq03100] D CIK05_03380 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CIK05_00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_05090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_04525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CIK05_00245 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CIK05_05505 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CIK05_07315 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CIK05_11765 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CIK05_06235 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CIK05_05240 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CIK05_12445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CIK05_09885 tRNA-His K14226 tRNA-His; tRNA His D CIK05_03390 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CIK05_13455 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_10330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_09745 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CIK05_06240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CIK05_08895 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_01730 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_10770 tRNA-Met K14230 tRNA-Met; tRNA Met D CIK05_15470 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CIK05_03415 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CIK05_00415 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CIK05_12455 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CIK05_12440 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CIK05_12430 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CIK05_12450 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CIK05_08575 tRNA-Val K14237 tRNA-Val; tRNA Val D CIK05_00770 tRNA-Val K14237 tRNA-Val; tRNA Val D CIK05_03385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CIK05_03400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CIK05_06150 DNA-binding protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D CIK05_03485 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D CIK05_00190 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D CIK05_02335 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CIK05_08505 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CIK05_06160 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CIK05_06175 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CIK05_09890 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CIK05_01205 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D CIK05_09345 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CIK05_05700 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CIK05_04120 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CIK05_00195 ahpC; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D CIK05_00385 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D CIK05_11990 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CIK05_01330 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CIK05_09720 low molecular weight phosphatase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CIK05_10830 low molecular weight phosphatase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CIK05_10920 low molecular weight phosphatase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CIK05_04250 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CIK05_04255 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CIK05_06815 hypothetical protein K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D CIK05_05395 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D CIK05_14160 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D CIK05_03745 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D CIK05_13375 glycosyltransferase K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D CIK05_01805 DTW domain-containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D CIK05_10010 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D CIK05_13870 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CIK05_04155 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CIK05_04040 bifunctional ([pyruvate, phosphate dikinase] phosphate) phosphotransferase/[pyruvate, phosphate dikinase] kinase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D CIK05_07955 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D CIK05_08580 hypothetical protein K03928 yvaK; carboxylesterase [EC:3.1.1.1] D CIK05_07915 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CIK05_04300 nuclease K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D CIK05_03910 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CIK05_10020 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CIK05_04780 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CIK05_03475 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D CIK05_02330 speB; agmatinase K18459 gpuA; guanidinopropionase [EC:3.5.3.17] D CIK05_09805 reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CIK05_06610 maf; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D CIK05_11740 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D CIK05_07790 NAD(P)H-hydrate dehydratase K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136] D CIK05_09160 methylmalonyl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D CIK05_08050 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D CIK05_10910 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D CIK05_11055 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D CIK05_13175 sfsA; DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D CIK05_04960 hypothetical protein K04755 fdx; ferredoxin, 2Fe-2S D CIK05_15610 hypothetical protein K04755 fdx; ferredoxin, 2Fe-2S D CIK05_02815 ferredoxin K05337 fer; ferredoxin D CIK05_00090 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D CIK05_09780 DUF2817 domain-containing protein K14054 mpaA; murein peptide amidase A D CIK05_02105 DUF2817 domain-containing protein K14054 mpaA; murein peptide amidase A D CIK05_02435 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D CIK05_12195 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D CIK05_04010 hypothetical protein K01449 cwlJ; cell wall hydrolase D CIK05_08205 hypothetical protein K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D CIK05_02345 ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein D CIK05_07930 polyketide cyclase K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism D CIK05_04345 alpha-glucosidase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D CIK05_03210 serine esterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D CIK05_03540 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D CIK05_10895 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D CIK05_05420 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D CIK05_00700 tig; trigger factor K03545 tig; trigger factor D CIK05_02980 SsrA-binding protein K03664 smpB; SsrA-binding protein D CIK05_07310 competence protein ComM K07391 comM; magnesium chelatase family protein D CIK05_10665 hypothetical protein K07394 K07394; SM-20-related protein D CIK05_01320 hypothetical protein K07397 yhfA; putative redox protein D CIK05_09060 xdhC; xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor D CIK05_13090 hypothetical protein K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D CIK05_06365 DNA methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D CIK05_08500 hypothetical protein K07450 K07450; putative resolvase D CIK05_01630 DNA repair protein K03630 radC; DNA repair protein RadC D CIK05_02720 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D CIK05_06410 hypothetical protein K04096 smf; DNA processing protein D CIK05_05730 replication-associated recombination protein A K07478 ycaJ; putative ATPase D CIK05_14880 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D CIK05_13030 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D CIK05_11155 hypothetical protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D CIK05_00865 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CIK05_08020 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family C 99978 Cell growth D CIK05_05225 hypothetical protein K06330 cotH; spore coat protein H D CIK05_16000 hypothetical protein K06346 jag; spoIIIJ-associated protein D CIK05_11760 septation protein SpoVG K06412 spoVG; stage V sporulation protein G D CIK05_01670 SpoVR family protein K06415 spoVR; stage V sporulation protein R C 99993 Cell motility D CIK05_01635 penicillin-binding protein activator LpoB K07337 K07337; penicillin-binding protein activator D CIK05_00855 gliding-motility protein MglA K24105 mglA; mutual gliding-motility protein MglA C 99995 Signaling proteins D CIK05_15080 typA; translational GTPase TypA K06207 typA; GTP-binding protein D CIK05_13250 phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase D CIK05_01660 serine protein kinase K07180 prkA; serine protein kinase C 99992 Structural proteins D CIK05_15645 hypothetical protein K03634 lolA; outer membrane lipoprotein carrier protein D CIK05_03875 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D CIK05_10475 hypothetical protein K06142 hlpA; outer membrane protein D CIK05_15595 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D CIK05_03780 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D CIK05_01585 hypothetical protein K05794 terC; tellurite resistance protein TerC D CIK05_10715 Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein D CIK05_10855 hypothetical protein K07231 K07231; putative iron-regulated protein D CIK05_15840 iron-regulated protein A precursor K07231 K07231; putative iron-regulated protein B B 09194 Poorly characterized C 99996 General function prediction only D CIK05_05975 hypothetical protein K04065 osmY; hyperosmotically inducible periplasmic protein D CIK05_01545 hypothetical protein K04065 osmY; hyperosmotically inducible periplasmic protein D CIK05_13500 hypothetical protein K06886 glbN; hemoglobin D CIK05_08585 patatin K07001 K07001; NTE family protein D CIK05_01020 patatin K07001 K07001; NTE family protein D CIK05_08310 patatin family protein K07001 K07001; NTE family protein D CIK05_14985 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D CIK05_14975 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D CIK05_11565 hypothetical protein K07058 K07058; membrane protein D CIK05_04580 hypothetical protein K07058 K07058; membrane protein D CIK05_00390 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D CIK05_08090 Fe-S metabolism protein SufE K02426 sufE; cysteine desulfuration protein SufE D CIK05_08855 hypothetical protein K07146 K07146; UPF0176 protein D CIK05_01370 hypothetical protein K04750 phnB; PhnB protein D CIK05_10650 glyoxalase K04750 phnB; PhnB protein D CIK05_05070 LemA family protein K03744 lemA; LemA protein D CIK05_09035 hypothetical protein K03745 slyX; SlyX protein D CIK05_08320 hypothetical protein K03975 dedA; membrane-associated protein D CIK05_06095 hypothetical protein K01421 yhgE; putative membrane protein D CIK05_15270 DUF1304 domain-containing protein K08987 K08987; putative membrane protein D CIK05_05080 hypothetical protein K08988 K08988; putative membrane protein D CIK05_09045 hypothetical protein K08995 K08995; putative membrane protein D CIK05_01785 hypothetical protein K08995 K08995; putative membrane protein D CIK05_01580 hypothetical protein K09858 K09858; SEC-C motif domain protein D CIK05_04440 PhnA protein K06193 phnA; protein PhnA C 99997 Function unknown D CIK05_13815 radical SAM/SPASM domain-containing protein K06871 K06871; uncharacterized protein D CIK05_05075 hypothetical protein K06872 K06872; uncharacterized protein D CIK05_14375 hydrolase K06885 K06885; uncharacterized protein D CIK05_11955 hypothetical protein K06889 K06889; uncharacterized protein D CIK05_01025 alpha/beta hydrolase K06889 K06889; uncharacterized protein D CIK05_04330 CoA-binding protein K06929 K06929; uncharacterized protein D CIK05_02740 zinc/iron-chelating domain-containing protein K06940 K06940; uncharacterized protein D CIK05_03015 zinc/iron-chelating domain-containing protein K06940 K06940; uncharacterized protein D CIK05_05570 hypothetical protein K06940 K06940; uncharacterized protein D CIK05_12765 hypothetical protein K06940 K06940; uncharacterized protein D CIK05_01305 hydrolase K06950 K06950; uncharacterized protein D CIK05_04240 NAD/FAD-binding protein K06954 K06954; uncharacterized protein D CIK05_08825 RNA-binding protein K06960 K06960; uncharacterized protein D CIK05_05370 hypothetical protein K06971 K06971; uncharacterized protein D CIK05_07365 hypothetical protein K06976 K06976; uncharacterized protein D CIK05_15735 hypothetical protein K07003 K07003; uncharacterized protein D CIK05_12175 thioesterase K07019 K07019; uncharacterized protein D CIK05_07670 TIGR01777 family protein K07071 K07071; uncharacterized protein D CIK05_11190 hypothetical protein K07090 K07090; uncharacterized protein D CIK05_04285 permease K07090 K07090; uncharacterized protein D CIK05_04480 hypothetical protein K07098 K07098; uncharacterized protein D CIK05_15680 hypothetical protein K07133 K07133; uncharacterized protein D CIK05_09145 hypothetical protein K07137 K07137; uncharacterized protein D CIK05_08295 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein D CIK05_07645 ATP-dependent protease La K07157 K07157; uncharacterized protein D CIK05_16010 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D CIK05_02450 hypothetical protein K09005 K09005; uncharacterized protein D CIK05_00480 hypothetical protein K09005 K09005; uncharacterized protein D CIK05_01705 glutamyl-tRNA amidotransferase K09117 K09117; uncharacterized protein D CIK05_01375 hypothetical protein K09131 K09131; uncharacterized protein D CIK05_07615 DUF366 domain-containing protein K09139 K09139; uncharacterized protein D CIK05_11820 AAA family ATPase K09384 K09384; uncharacterized protein D CIK05_04245 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein D CIK05_01150 YaiI/YqxD family protein K09768 K09768; uncharacterized protein D CIK05_01665 hypothetical protein K09786 K09786; uncharacterized protein D CIK05_06635 hypothetical protein K09799 K09799; uncharacterized protein D CIK05_03185 hypothetical protein K09807 K09807; uncharacterized protein D CIK05_07190 GntR family transcriptional regulator K00243 K00243; uncharacterized protein D CIK05_09830 hypothetical protein K09859 K09859; uncharacterized protein D CIK05_13915 DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D CIK05_08985 hypothetical protein K09898 K09898; uncharacterized protein D CIK05_07625 hypothetical protein K09922 K09922; uncharacterized protein D CIK05_01570 cytoplasmic protein K09927 K09927; uncharacterized protein D CIK05_04170 hypothetical protein K09950 K09950; uncharacterized protein D CIK05_00980 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 19, 2024