+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bordetella genomosp. 13

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CAL15_22090 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CAL15_02460 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CAL15_17330 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CAL15_22610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CAL15_15620 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CAL15_21390 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CAL15_16955 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CAL15_04910 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D CAL15_18850 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D CAL15_21205 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CAL15_09620 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CAL15_22090 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CAL15_02460 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CAL15_01680 bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CAL15_17330 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CAL15_01685 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E CAL15_22610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CAL15_08485 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E CAL15_19300 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CAL15_19620 hydroxyacid dehydrogenase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CAL15_17065 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CAL15_11785 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CAL15_15620 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CAL15_21390 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CAL15_22095 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CAL15_19775 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CAL15_04455 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CAL15_16955 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CAL15_08370 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CAL15_02330 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CAL15_09325 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CAL15_17045 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CAL15_10420 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CAL15_19150 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CAL15_23325 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CAL15_09450 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CAL15_10810 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CAL15_09550 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CAL15_11330 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CAL15_10420 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CAL15_17045 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CAL15_23740 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CAL15_23735 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CAL15_23450 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CAL15_13820 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CAL15_17130 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CAL15_11910 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CAL15_19385 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CAL15_14670 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CAL15_15215 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CAL15_11145 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CAL15_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CAL15_16690 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CAL15_11050 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CAL15_07530 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CAL15_15530 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CAL15_20330 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CAL15_13495 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CAL15_17045 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CAL15_09550 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CAL15_11330 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CAL15_03325 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CAL15_18715 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CAL15_23315 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CAL15_17420 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CAL15_09945 recombinase RecA K03553 recA; recombination protein RecA E CAL15_19025 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CAL15_19050 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CAL15_19020 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CAL15_01975 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CAL15_15190 primosomal replication protein N K02686 priB; primosomal replication protein N D RecFOR pathway proteins E CAL15_09945 recombinase RecA K03553 recA; recombination protein RecA E CAL15_10580 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CAL15_06470 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CAL15_09325 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CAL15_16705 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CAL15_13485 recombination protein RecR K06187 recR; recombination protein RecR E CAL15_18150 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CAL15_09975 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E CAL15_19025 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CAL15_19050 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CAL15_19020 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CAL15_21600 subtype I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E CAL15_15400 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E CAL15_11965 Ku protein K10979 ku; DNA end-binding protein Ku E CAL15_11970 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E CAL15_06805 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CAL15_15980 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CAL15_00015 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CAL15_04895 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CAL15_14835 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CAL15_09325 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CAL15_16705 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CAL15_13485 recombination protein RecR K06187 recR; recombination protein RecR F CAL15_17045 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CAL15_19010 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CAL15_14405 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F CAL15_15940 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F CAL15_19055 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CAL15_19150 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CAL15_23325 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CAL15_09450 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F CAL15_15095 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CAL15_14320 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CAL15_09945 recombinase RecA K03553 recA; recombination protein RecA D CAL15_09460 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CAL15_18150 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CAL15_13110 hypothetical protein K14160 imuA; protein ImuA D CAL15_14285 cell division protein K14160 imuA; protein ImuA D CAL15_13115 hypothetical protein K14161 imuB; protein ImuB D CAL15_14290 DNA polymerase K14161 imuB; protein ImuB D CAL15_13120 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CAL15_14295 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CAL15_03325 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CAL15_18715 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CAL15_23315 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CAL15_09940 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CAL15_01980 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CAL15_16205 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CAL15_05180 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CAL15_21205 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CAL15_09620 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CAL15_20920 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CAL15_20925 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024