+D GENES KO #

  KEGG Orthology (KO) - Bordetella holmesii ATCC 51541

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:bho00010] D D560_0471 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D D560_2613 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D560_3073 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D560_0164 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D560_3040 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D560_3041 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D D560_1147 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_3118 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D560_1046 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D560_3482 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D D560_3335 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_2409 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_3334 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_1807 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_0343 hypothetical protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_0576 coA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_3776 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:bho00020] D D560_2392 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D D560_0810 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D560_0261 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D560_0806 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D D560_3554 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D560_0220 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D560_2413 oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D D560_2414 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3180 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D D560_3179 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D560_0798 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D D560_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D560_2390 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D560_2387 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D560_2388 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D D560_1021 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D D560_1003 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D D560_2385 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D560_3776 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D D560_3335 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_2409 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_3334 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:bho00030] D D560_0471 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D D560_1730 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D D560_3039 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D D560_3110 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D D560_2559 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0442 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D D560_2070 PQQ enzyme repeat family protein K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D D560_2709 GMC oxidoreductase family protein K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D D560_2710 gluconate 2-dehydrogenase subunit 3 family protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D D560_3073 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D560_2613 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:bho00040] D D560_1090 D-galactarate dehydratase/altronate hydrolase family protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D D560_1089 D-galactarate dehydratase/altronate hydrolase family protein K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D D560_1625 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D560_0295 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D D560_1730 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:bho00051] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0409 fumarylacetoacetate (FAA) hydrolase family protein K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26] D D560_2613 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D560_3073 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D560_0164 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D560_3250 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:bho00052] D D560_0295 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00053 Ascorbate and aldarate metabolism [PATH:bho00053] D D560_1625 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_2700 garL; 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] D D560_1639 L-2-keto-3-deoxyarabonate dehydratase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43] D D560_1638 mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein K25260 lxyD; L-lyxonate dehydratase [EC:4.2.1.176] C 00500 Starch and sucrose metabolism [PATH:bho00500] D D560_0295 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0471 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bho00520] D D560_2968 glycosyl hydrolase family 3 N terminal domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D560_1628 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D560_3137 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D D560_1621 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D D560_2035 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D D560_2476 phosphoglycolate phosphatase, bacterial K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D D560_1055 phosphotransferase enzyme family protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D D560_1056 mobA-like NTP transferase domain protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D D560_3746 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_1577 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_0245 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D560_1328 putative dehydrogenase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D D560_1330 wbpE; UDP-2-acetamido-2-dideoxy-d-ribo-hex-3-uluronic acid transaminase, wbpE K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D D560_1329 wlbB; lipopolysaccharides biosynthesis acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D D560_1331 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] D D560_0480 wbgU; wbgU K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] D D560_0481 nucleotide sugar dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D560_3624 nucleotide sugar dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0295 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D D560_1625 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D560_3250 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D D560_0471 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D D560_0719 2Fe-2S iron-sulfur cluster binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:bho00620] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_3335 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_2409 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_3334 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_0343 hypothetical protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D560_3045 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D560_1046 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D560_0065 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D560_1980 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D560_1981 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D560_2293 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D560_1651 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_0798 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D D560_0576 coA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D D560_1650 nitronate monooxygenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D D560_3766 nitronate monooxygenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D D560_3597 FMN-dependent dehydrogenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D D560_1807 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D D560_2621 FAD linked oxidase, C-terminal domain protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D D560_1040 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D D560_3901 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D D560_2085 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D D560_0022 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D560_3035 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D D560_2408 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D D560_1377 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D D560_2385 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D560_1021 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D D560_1003 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D D560_1082 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D D560_3776 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D D560_3482 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D D560_1321 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1515 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bho00630] D D560_2976 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_1321 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D D560_2385 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D560_2392 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D D560_0810 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D560_0261 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D560_0806 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_3429 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D D560_2436 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D D560_2627 FAD linked oxidase, C-terminal domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D D560_2628 FAD binding domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D D560_2629 4Fe-4S binding domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D D560_0022 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D560_1729 phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D D560_2299 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D D560_1181 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D D560_2040 aminotransferase class-V family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D560_0505 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D560_0507 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_0506 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D D560_1047 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D D560_0018 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D D560_2875 NADH-dependent formate dehydrogenase delta subunit FdsD family protein K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D D560_1712 molybdopterin oxidoreductase family protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_1713 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_2877 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_2880 respiratory-chain NADH dehydrogenase 51 Kd subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D D560_1714 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D D560_2881 respiratory-chain NADH dehydrogenase 24 Kd subunit K00127 fdoI; formate dehydrogenase subunit gamma D D560_1715 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D D560_1936 alpha/beta hydrolase fold family protein K01432 AFMID; arylformamidase [EC:3.5.1.9] D D560_2921 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D D560_0997 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D D560_0567 N-formylglutamate amidohydrolase family protein K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:bho00640] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2343 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D D560_0576 coA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D D560_3045 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_0065 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D560_1980 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D560_1981 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D560_2293 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D560_2944 malonyl-CoA decarboxylase family protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D D560_2819 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D D560_0490 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D D560_3179 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D560_3180 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D D560_0491 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_2337 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_2383 2-methylcitrate synthase/citrate synthase II family protein K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D D560_2382 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D D560_0252 acnD; 2-methylisocitrate dehydratase, Fe/S-dependent K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D D560_0253 putative AcnD-accessory protein PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D D560_0806 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D D560_2384 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D D560_1807 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] C 00650 Butanoate metabolism [PATH:bho00650] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1080 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_1781 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_2802 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_2808 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_0937 enoyl-CoA hydratase/isomerase family protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2435 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D D560_2281 phaZ; polyhydroxyalkanoate depolymerase, intracellular family protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D D560_3429 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D D560_2436 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D D560_0018 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D D560_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D560_2390 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D560_2387 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D560_2388 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D D560_2819 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D D560_0023 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D D560_1436 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1522 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2463 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2818 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1176 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_3896 sad; succinate semialdehyde dehydrogenase [NAD(P)+] Sad K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24] D D560_0798 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D D560_0411 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_1194 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_2353 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D D560_2354 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D D560_3385 D(-)-3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D D560_1660 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_1349 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3083 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3089 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3590 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3377 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3376 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:bho00660] D D560_1660 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_1349 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3083 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3089 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3590 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3377 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3376 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D D560_0413 mmgE/PrpD family protein K17724 IRG1; aconitate decarboxylase [EC:4.1.1.6] D D560_1019 coA-transferase III family protein K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D D560_3179 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D560_3180 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D D560_0129 maoC like domain protein K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D D560_1020 metal-binding domain of MaoC dehydratase family protein K18291 ich-P; itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase [EC:4.2.1.56 4.2.1.-] D D560_1018 hypothetical protein K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D D560_0869 ligK; 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D D560_1026 aconitase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D D560_3222 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D D560_3223 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D D560_3225 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:bho00562] D D560_2266 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_2267 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3305 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D D560_0668 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D560_0073 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D560_0491 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_2337 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_0164 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:bho00190] D D560_2217 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D D560_2218 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D D560_2219 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D D560_2220 nuoD; NADH dehydrogenase (quinone), D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D D560_2221 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D D560_2222 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D D560_2223 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D D560_2224 NADH dehydrogenase family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D D560_2225 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D D560_2226 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D D560_2227 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D D560_2228 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D D560_2230 proton-translocating NADH-quinone oxidoreductase, chain M family protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D D560_2231 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D D560_0377 pyridine nucleotide-disulfide oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D D560_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D560_2390 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D560_2387 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D560_2388 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D D560_1559 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D D560_1558 cytochrome b family protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D D560_1557 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D D560_1616 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D560_2852 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D D560_0752 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D D560_1611 cytochrome c oxidase subunit III family protein K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D D560_1609 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D D560_1605 cytochrome c family protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D D560_1615 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D D560_2851 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D D560_0751 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D D560_2850 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D D560_0750 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D D560_2849 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D D560_0749 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D D560_0318 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D D560_1841 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D D560_0317 cytochrome oxidase subunit II family protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D D560_1842 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D D560_1843 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D D560_2144 cyt; cytochrome c-552 K08738 CYC; cytochrome c D D560_2708 cytC; cytochrome c domain protein K08738 CYC; cytochrome c D D560_1749 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D D560_1751 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D D560_1750 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D D560_1748 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D D560_1752 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D D560_1745 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D560_1747 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D D560_1746 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D D560_3188 inorganic pyrophosphatase family protein K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D D560_3141 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:bho00680] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_1595 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D D560_1712 molybdopterin oxidoreductase family protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_1713 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_2877 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D D560_2880 respiratory-chain NADH dehydrogenase 51 Kd subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D D560_1714 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D D560_2881 respiratory-chain NADH dehydrogenase 24 Kd subunit K00127 fdoI; formate dehydrogenase subunit gamma D D560_1715 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D D560_2875 NADH-dependent formate dehydrogenase delta subunit FdsD family protein K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D D560_2040 aminotransferase class-V family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D560_1082 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D D560_2385 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D560_3073 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D560_2613 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D560_3045 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_3482 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D D560_1147 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_3118 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_1861 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3903 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_2481 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D560_2233 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D D560_0606 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:bho00910] D D560_0851 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D D560_1777 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D D560_3447 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D560_1796 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D D560_1591 GXGXG motif family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D D560_1590 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D D560_1069 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:bho00920] D D560_2503 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D D560_2504 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D D560_2505 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D D560_2506 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D D560_3330 ABC transporter, substrate-binding, aliphatic sulfonates family protein K15551 tauA; taurine transport system substrate-binding protein D D560_3329 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D D560_0946 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_1341 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_3107 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0929 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0930 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0947 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0948 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_3109 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0931 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_0949 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_1342 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_3108 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_0928 luciferase-like monooxygenase family protein K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D D560_2509 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D560_2508 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D560_2507 adenylylsulfate reductase, thioredoxin dependent family protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D D560_2900 flavodoxin family protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D D560_1066 nitrite/Sulfite reductase ferredoxin-like half domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D D560_2582 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D D560_2814 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D D560_1790 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D D560_1527 rieske domain protein K15762 tmoC; toluene monooxygenase system ferredoxin subunit D D560_2501 acyl-CoA dehydrogenase, N-terminal domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:bho00061] D D560_0065 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D560_1980 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D560_1981 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D560_2293 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D560_2312 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D D560_2310 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D560_2309 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D560_1872 putative 3-oxoacyl-[acyl-carrier-(ACP)] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D560_2313 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_0646 beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_1347 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2311 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2461 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2842 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_0579 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3837 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1078 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1167 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3489 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D D560_3043 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2081 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2082 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_0669 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1214 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_2804 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:bho00071] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2808 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D560_3516 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_3662 acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1954 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1164 acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_0412 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1044 acyl-CoA dehydrogenase, N-terminal domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D D560_2812 acyl-CoA dehydrogenase, N-terminal domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D D560_3088 acyl-CoA dehydrogenase, N-terminal domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D560_0669 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1214 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_2804 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1678 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D D560_1526 pyridine nucleotide-disulfide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:bho00561] D D560_1047 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_0343 hypothetical protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D560_2308 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D D560_3706 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D560_1033 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D560_1969 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D560_0376 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:bho00564] D D560_1151 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D D560_3748 FAD binding domain protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D D560_3706 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D560_1033 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D560_1969 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D560_0376 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D D560_2266 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_2267 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3305 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3690 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D D560_3497 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D D560_3374 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D D560_3596 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D D560_0380 phosphatidylglycerophosphatase A family protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D D560_2662 phospholipase D family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D D560_2663 phospholipase D family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D D560_0111 phospholipase D family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D D560_1305 putative cardiolipin synthase YbhO K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D D560_1068 PLD-like domain protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D D560_2971 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D D560_2266 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_2267 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3305 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:bho00592] D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:bho01040] D D560_3281 fatty acid desaturase family protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D560_3687 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D D560_0673 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:bho00230] D D560_2997 NUDIX domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0442 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D D560_3508 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D D560_0027 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D D560_3277 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D D560_1837 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D D560_3871 cobB/CobQ-like glutamine amidotransferase domain protein K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D D560_1010 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D D560_3076 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D D560_3075 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D D560_3074 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D D560_2640 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D D560_0307 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D560_1847 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D D560_3705 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D560_2433 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D D560_3846 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D D560_0698 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D560_3655 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D D560_3481 glutamine amidotransferase class-I family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D560_3845 guaA; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D560_3671 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D D560_1996 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D560_1995 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D D560_1472 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D D560_3673 relA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D D560_3140 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D D560_2288 relA/SpoT family protein K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D D560_2188 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D D560_1984 pfkB carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D D560_3668 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D D560_0849 add; adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D D560_2713 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D D560_1600 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D D560_1970 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D D560_2509 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D560_2508 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D560_3852 FAD binding domain protein K22879 hpyO; FAD-dependent urate hydroxylase [EC:1.14.13.113] C 00240 Pyrimidine metabolism [PATH:bho00240] D D560_3113 carbamoyl-phosphate synthase L chain, ATP binding domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D560_3114 carbamoyl-phosphate synthase L chain, ATP binding domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D560_3112 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D D560_3164 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D D560_1968 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D D560_2161 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D D560_0275 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D D560_1798 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D D560_0378 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D D560_3500 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D D560_0698 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D560_0034 maf-like family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D D560_2364 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D D560_2487 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D D560_3705 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D560_3023 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D D560_1648 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D D560_0514 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D D560_1996 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D560_1995 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D D560_3459 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D D560_3261 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D560_0486 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D D560_3592 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D D560_3778 amaB; N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:bho00250] D D560_3606 aspartate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D D560_2356 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D560_1480 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D560_0475 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D560_2687 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D D560_0172 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2066 lyase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2473 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2188 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D D560_2640 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D D560_3164 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D D560_2819 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D D560_0023 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D D560_1436 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1522 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2463 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2818 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1176 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_3896 sad; succinate semialdehyde dehydrogenase [NAD(P)+] Sad K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24] D D560_1591 GXGXG motif family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D D560_1590 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D D560_3447 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D560_1796 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D D560_2737 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D D560_3113 carbamoyl-phosphate synthase L chain, ATP binding domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D560_3114 carbamoyl-phosphate synthase L chain, ATP binding domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D560_3112 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D D560_1628 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D560_3508 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:bho00260] D D560_0063 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D D560_3226 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D560_2609 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D560_3206 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D D560_2610 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D D560_2350 degT/DnrJ/EryC1/StrS aminotransferase family protein K01620 ltaE; threonine aldolase [EC:4.1.2.48] D D560_2040 aminotransferase class-V family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D560_0022 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D560_1047 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D D560_1147 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_3118 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_1861 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3903 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_2481 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D560_2233 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D D560_0606 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D D560_0505 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D560_0507 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_0506 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D D560_3374 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D D560_1178 GMC oxidoreductase family protein K00108 betA; choline dehydrogenase [EC:1.1.99.1] D D560_0743 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D560_1850 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_0115 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_3368 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_2292 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D D560_2291 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D D560_0726 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D D560_0727 ectA; diaminobutyrate acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D D560_0724 cupin domain protein K06720 ectC; L-ectoine synthase [EC:4.2.1.108] D D560_0723 thpD; ectoine hydroxylase K10674 ectD; ectoine hydroxylase [EC:1.14.11.55] C 00270 Cysteine and methionine metabolism [PATH:bho00270] D D560_2814 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D D560_1506 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D D560_1896 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D560_3176 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D D560_1262 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D D560_1236 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D D560_2433 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D D560_1316 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D D560_1257 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D560_0063 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D D560_3226 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D560_2609 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D560_1790 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D D560_2674 aluminum resistance family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D D560_0976 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D D560_0896 putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2268 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_1784 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D D560_3248 prokaryotic glutathione synthetase, N-terminal domain protein K01920 gshB; glutathione synthase [EC:6.3.2.3] D D560_3249 prokaryotic glutathione synthetase, ATP-grasp domain protein K01920 gshB; glutathione synthase [EC:6.3.2.3] D D560_2582 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D D560_1807 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D D560_2385 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D560_1789 malate/L-lactate dehydrogenase family protein K16844 comC; (2R)-3-sulfolactate dehydrogenase (NADP+) [EC:1.1.1.338] D D560_0743 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D560_1861 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3903 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_2481 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:bho00280] D D560_0896 putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2268 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3516 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_3662 acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1954 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1164 acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_0412 acyl-CoA dehydrogenase, N-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D D560_1502 acyl-CoA dehydrogenase, N-terminal domain protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D560_1670 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D D560_0540 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D D560_3467 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D D560_2136 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D D560_2207 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D D560_0491 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_2337 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_2947 AMP-binding enzyme family protein K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D D560_2946 AMP-binding enzyme family protein K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D D560_0490 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D D560_1499 carbamoyl-phosphate synthase L chain, ATP binding domain protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D D560_1500 carboxyl transferase domain protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D D560_0411 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_1194 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_2353 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D D560_2354 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bho00290] D D560_1850 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_0115 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_3368 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D560_1026 aconitase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D D560_3222 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D D560_3223 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D D560_3225 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D D560_1660 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_1349 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3083 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3089 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3590 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3377 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3376 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D D560_3375 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D D560_1676 dehydratase family protein K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D D560_1086 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D D560_0896 putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2268 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_1515 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:bho00300] D D560_2609 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D560_0063 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D D560_3226 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D560_1314 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_1088 putative dihydrodipicoline synthase related protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_0101 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_0244 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D D560_3287 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D D560_2689 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_1497 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_3288 dapC; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D D560_3286 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D D560_1265 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D D560_1467 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D D560_1317 alanine-glyoxylate amino-transferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D D560_1197 alanine-glyoxylate amino-transferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D D560_2167 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10] C 00310 Lysine degradation [PATH:bho00310] D D560_2414 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3088 acyl-CoA dehydrogenase, N-terminal domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1436 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1522 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2463 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2818 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1176 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1780 coA-transferase III family protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D D560_2801 hypothetical protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D D560_1286 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:bho00220] D D560_2688 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D D560_2687 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D D560_0172 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2066 lyase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2473 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_0530 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D D560_2863 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D D560_3447 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D560_1796 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D D560_2562 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D D560_1933 argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D D560_1811 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D D560_0860 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D D560_2029 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D D560_2689 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_1497 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_2290 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:bho00330] D D560_1648 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D D560_0511 orn/Lys/Arg decarboxylase, N-terminal domain protein K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D D560_0369 orn/Lys/Arg decarboxylase, N-terminal domain protein K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_2648 acetyltransferase domain protein K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D D560_1654 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0167 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_3594 aldehyde dehydrogenase family protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D D560_0911 FAD dependent oxidoreductase family protein K24955 ooxB; octopine oxidase subunit B D D560_0530 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D D560_3614 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D D560_2737 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D D560_1133 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D D560_0780 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D D560_0602 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D560_1286 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:bho00340] D D560_1576 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D D560_2187 histidyl-tRNA synthetase family protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D D560_1568 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D D560_1569 phosphoribosyl-AMP cyclohydrolase family protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D D560_1571 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D D560_1572 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D D560_1570 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D D560_1573 imidazoleglycerol-phosphate dehydratase family protein K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1575 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D D560_3450 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D D560_0643 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D D560_0567 N-formylglutamate amidohydrolase family protein K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_2657 egtD; dimethylhistidine N-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:bho00350] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D D560_2146 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D560_0457 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D D560_2925 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D D560_0458 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_1436 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1522 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2463 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2818 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1176 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_3321 fumarylacetoacetate (FAA) hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] D D560_3189 fumarylacetoacetate (FAA) hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:bho00360] D D560_2533 AMP-binding enzyme family protein K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D D560_2534 AMP-binding enzyme family protein K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D D560_2531 paaD; phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D D560_2524 phenylacetic acid catabolic family protein K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D D560_2525 phenylacetic acid degradation B family protein K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D D560_2526 paaC; phenylacetic acid degradation protein paaC K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D D560_2527 paaJ; phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D D560_2528 2Fe-2S iron-sulfur cluster binding domain protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D D560_2530 paaB; phenylacetate degradation putative enoyl-CoA hydratase PaaB K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_1080 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_1781 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_2802 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D D560_2146 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D560_2800 FAD binding domain protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D D560_0718 FAD binding domain protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D D560_3740 FAD dependent oxidoreductase family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D D560_1286 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D D560_1366 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D D560_1654 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0167 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_1678 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D D560_1526 pyridine nucleotide-disulfide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D D560_1693 FAD binding domain protein K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] C 00380 Tryptophan metabolism [PATH:bho00380] D D560_2920 kynA; tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D D560_1936 alpha/beta hydrolase fold family protein K01432 AFMID; arylformamidase [EC:3.5.1.9] D D560_2921 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D D560_1186 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D D560_2414 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3088 acyl-CoA dehydrogenase, N-terminal domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_1654 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0167 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_1366 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bho00400] D D560_2618 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D D560_3786 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D D560_1471 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D D560_1979 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D D560_1973 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D D560_0057 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family protein K05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8] D D560_1470 shikimate kinase family protein K00891 aroK; shikimate kinase [EC:2.7.1.71] D D560_2485 EPSP synthase family protein K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D D560_3216 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D D560_1728 chorismate binding enzyme family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D560_1727 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D D560_1726 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D D560_3232 N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D D560_1725 indole-3-glycerol phosphate synthase family protein K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D D560_2292 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D D560_2291 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D D560_2482 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D D560_2484 prephenate dehydrogenase family protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:bho00410] D D560_0720 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D D560_2819 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_1919 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D D560_3592 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D D560_3778 amaB; N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D D560_0490 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_2944 malonyl-CoA decarboxylase family protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D D560_0491 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D D560_2337 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:bho00430] D D560_2536 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2941 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0843 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0998 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_3045 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:bho00440] D D560_3796 phosphonopyruvate hydrolase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D D560_2397 phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1] C 00450 Selenocompound metabolism [PATH:bho00450] D D560_1506 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D D560_1896 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D560_3176 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D D560_0202 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D D560_2509 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D560_2508 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D560_1720 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D D560_1717 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D D560_0522 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:bho00460] D D560_2536 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2941 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0843 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0998 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2356 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D560_2040 aminotransferase class-V family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:bho00470] D D560_2910 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D D560_1286 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D D560_2175 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D560_1992 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D D560_1986 phosphopantetheine attachment site family protein K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D D560_2170 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D560_3606 aspartate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D D560_1496 D-threonine aldolase K19967 dta; D-threonine aldolase [EC:4.1.2.42] D D560_1265 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D D560_1467 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D D560_2800 FAD binding domain protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D D560_0718 FAD binding domain protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D D560_3740 FAD dependent oxidoreductase family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:bho00480] D D560_2536 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2941 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0843 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0998 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0676 chaC-like family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D D560_0993 chaC-like family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D D560_1855 lamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D D560_1156 ybdK; carboxylate-amine ligase YbdK K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D D560_1784 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D D560_3248 prokaryotic glutathione synthetase, N-terminal domain protein K01920 gshB; glutathione synthase [EC:6.3.2.3] D D560_3249 prokaryotic glutathione synthetase, ATP-grasp domain protein K01920 gshB; glutathione synthase [EC:6.3.2.3] D D560_2332 cytosol aminopeptidase family, catalytic domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D D560_2614 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D560_2639 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_0853 glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_1536 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_3603 glutathione S-transferase GST-4.5 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_1474 glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_0617 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_3049 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_2057 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_3784 pyridine nucleotide-disulfide oxidoreductase family protein K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D D560_3554 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D560_0220 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D560_3441 ahpC/TSA family protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D D560_3693 ahpC/TSA family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D D560_2892 ahpC/TSA family protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:bho00540] D D560_3488 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D D560_2179 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D D560_3490 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D D560_0070 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D D560_3487 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D D560_2715 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D D560_1836 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D D560_0651 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D D560_1835 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D D560_2714 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D D560_1295 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D D560_1263 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D560_1264 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D560_2564 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D D560_3115 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D D560_0675 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D D560_2294 lipid A 3-O-deacylase family protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D D560_2547 lipopolysaccharide kinase family protein K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D D560_1816 SIS domain protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D D560_1032 HAD hydrolase, family IIIA domain protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D D560_1887 rfaE; bifunctional protein RfaE, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D D560_2494 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D D560_1296 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D D560_2574 glycosyltransferase 9 family protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D D560_3883 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D560_1301 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D560_0217 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bho00541] D D560_0295 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D D560_1625 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D560_1298 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D560_1300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D560_1297 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D560_1299 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D D560_0719 2Fe-2S iron-sulfur cluster binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D D560_1621 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D D560_1335 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] D D560_0481 nucleotide sugar dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D560_3624 nucleotide sugar dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D560_1328 putative dehydrogenase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D D560_1330 wbpE; UDP-2-acetamido-2-dideoxy-d-ribo-hex-3-uluronic acid transaminase, wbpE K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D D560_1329 wlbB; lipopolysaccharides biosynthesis acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D D560_1331 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] D D560_0480 wbgU; wbgU K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:bho00550] D D560_3746 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_1577 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_0245 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D560_2174 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D D560_2170 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D560_2175 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D560_2167 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10] D D560_3498 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D D560_0071 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D560_2168 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D560_2173 glycosyltransferase family 28 C-terminal domain protein K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D D560_1972 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D560_1469 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2791 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2730 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D560_1805 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D560_2166 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D560_0338 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_1287 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_3022 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:bho00552] D D560_0071 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D560_1992 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D D560_1986 phosphopantetheine attachment site family protein K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D D560_1990 MBOAT, membrane-bound O-acyltransferase family protein K03739 dltB; membrane protein involved in D-alanine export D D560_2758 hypothetical protein K03740 dltD; D-alanine transfer protein D D560_1987 dltD domain protein K03740 dltD; D-alanine transfer protein D D560_1335 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:bho00543] D D560_2814 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:bho00730] D D560_1138 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D D560_1890 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D D560_3942 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D560_2592 transketolase, thiamine diphosphate binding domain protein K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D D560_1891 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D D560_1961 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D D560_0381 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D D560_2519 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D D560_2713 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:bho00740] D D560_0384 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D D560_2044 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D D560_1354 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D D560_0383 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D D560_2045 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D D560_3275 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D D560_3833 pho; acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D D560_2997 NUDIX domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D D560_1102 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:bho00750] D D560_0994 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D D560_2481 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D560_2604 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D D560_1637 pyridoxal phosphate biosynthetic PdxA family protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D D560_2966 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D D560_2610 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:bho00760] D D560_2985 oxidoreductase, NAD-binding Rossmann fold family protein K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D D560_2075 nadC; nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D D560_2284 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D D560_3705 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D560_0031 cytidylyltransferase family protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D D560_2069 NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D D560_0170 nadE; NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D D560_0379 competence/damage-inducible CinA C-terminal domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D D560_0236 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D D560_2631 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D D560_2632 alanine dehydrogenase/PNT, C-terminal domain protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D D560_2630 NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D D560_0263 isochorismatase family protein K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107] D D560_1436 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1522 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2463 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_2818 succinate-semialdehyde dehydrogenase [NADP+] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_1176 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D560_3896 sad; succinate semialdehyde dehydrogenase [NAD(P)+] Sad K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24] C 00770 Pantothenate and CoA biosynthesis [PATH:bho00770] D D560_1660 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_1349 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3083 thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3089 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3590 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3377 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D D560_3376 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D D560_3375 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D D560_1676 dehydratase family protein K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D D560_1086 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D D560_1683 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D D560_1919 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D D560_1293 type III pantothenate kinase family protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D D560_3272 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D D560_0398 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D D560_1923 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D D560_2967 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D D560_0896 putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2268 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_3592 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D D560_3778 amaB; N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D D560_0720 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:bho00780] D D560_1155 methyltransferase domain protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D D560_2313 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_0646 beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_1347 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2311 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2461 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2842 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_0579 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3837 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1078 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1167 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3489 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D D560_3043 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2081 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2082 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_0650 cys/Met metabolism PLP-dependent enzyme family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D560_3000 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D D560_1292 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:bho00785] D D560_1284 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D D560_1283 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D D560_3444 biotin/lipoate A/B ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3335 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_2409 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D D560_3334 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D560_2413 oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D D560_2414 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D560_0505 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D560_0507 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D560_0506 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:bho00790] D D560_2594 folE2; GTP cyclohydrolase folE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D D560_1738 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D D560_1014 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D D560_3136 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D D560_0487 dhfrIII; dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D D560_3511 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D D560_0384 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D D560_0986 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D D560_0987 aminotransferase class IV family protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D D560_3765 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D560_1058 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D D560_3764 radical SAM superfamily protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D D560_1083 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D D560_2974 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D D560_2883 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D D560_2889 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D D560_2887 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D D560_3057 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D D560_2886 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D D560_2885 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D D560_2884 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:bho00670] D D560_0487 dhfrIII; dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D D560_3339 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D D560_2040 aminotransferase class-V family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D560_3277 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D D560_0307 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D560_1184 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D D560_0507 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D560_1896 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D560_0486 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D D560_0997 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D D560_1255 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D D560_1243 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:bho00860] D D560_2004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D560_1106 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D D560_1960 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D560_1461 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D D560_3184 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D D560_3185 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D D560_1757 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D D560_3243 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D D560_2381 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D D560_1911 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D D560_0234 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D D560_3186 hemX family protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D D560_3024 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D D560_1616 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D560_1615 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D D560_1282 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D D560_1520 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bho00130] D D560_1956 thioesterase superfamily K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D D560_3351 chorismate lyase family protein K03181 ubiC; chorismate lyase [EC:4.1.3.40] D D560_1318 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D D560_3030 ubiD; ubiD decarboxylase family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D D560_1102 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D D560_1734 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D D560_2477 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D D560_0303 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D D560_1864 ubiquinone/menaquinone biosynthesis methyltransferase family protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D D560_0484 rubrerythrin family protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D D560_2146 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:bho00900] D D560_2592 transketolase, thiamine diphosphate binding domain protein K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D D560_3496 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D D560_2236 hypothetical protein K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D D560_0445 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D D560_2237 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D D560_0695 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D D560_2924 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1102 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D D560_2591 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D D560_1129 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D D560_3498 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D D560_2520 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:bho00906] D D560_2908 hpnD; squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:bho00907] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_0411 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_1194 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D D560_3039 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:bho00523] D D560_1298 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D560_1300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D560_1297 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D560_1299 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures [PATH:bho01054] D D560_3606 aspartate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D D560_1300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D D560_3154 beta-lactamase family protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:bho00332] D D560_1133 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D D560_0780 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:bho00261] D D560_2509 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D560_2508 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D560_0063 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D D560_3226 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D560_1314 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_1088 putative dihydrodipicoline synthase related protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_0101 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D560_0244 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:bho00521] D D560_0469 phosphoglucomutase/phosphomannomutase, C-terminal domain protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D D560_0668 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D560_0073 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D560_1298 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D560_1300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D560_1297 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D560_1299 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:bho00525] D D560_1298 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D560_1300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:bho00401] D D560_2484 prephenate dehydrogenase family protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D D560_1728 chorismate binding enzyme family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D560_1727 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D D560_2310 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D560_1347 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2311 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2461 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2842 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_0579 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3837 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1078 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1167 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3043 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2081 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2082 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:bho00998] D D560_2312 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D D560_3796 phosphonopyruvate hydrolase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] C 00999 Biosynthesis of various plant secondary metabolites [PATH:bho00999] D D560_1262 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D D560_1973 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:bho00362] D D560_1121 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D D560_1119 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D D560_1118 catB; muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D D560_1075 catC; muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D D560_1073 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D D560_1076 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D560_2722 pcaF; 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D D560_0155 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D D560_0365 tfdF; maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D D560_1669 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D D560_3894 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D D560_0541 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D D560_3708 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D D560_0873 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] D D560_3710 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] D D560_0871 prpF family protein K16514 galD; 4-oxalomesaconate tautomerase [EC:5.3.2.8] D D560_0870 ligJ; 4-oxalomesaconate hydratase K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83] D D560_0869 ligK; 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D D560_1956 thioesterase superfamily K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D D560_2016 bclA; benzoate--CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D D560_2808 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D560_3088 acyl-CoA dehydrogenase, N-terminal domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_1080 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_1781 NAD binding domain of 6-phosphogluconate dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_2802 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2022 boxA; benzoyl-CoA oxygenase/reductase, BoxA protein K15511 boxA; benzoyl-CoA 2,3-epoxidase subunit A [EC:1.14.13.208] D D560_2021 boxB; benzoyl-CoA oxygenase, B subunit K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208] D D560_2017 boxD; 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase K15514 boxD; 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase [EC:1.2.1.77] D D560_2020 boxC; benzoyl-CoA-dihydrodiol lyase K15513 boxC; benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44] C 00627 Aminobenzoate degradation [PATH:bho00627] D D560_1654 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0167 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_1651 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D D560_2016 bclA; benzoate--CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25] D D560_0952 mdlA; mandelate racemase K01781 mdlA; mandelate racemase [EC:5.1.2.2] D D560_0958 mdlB; (S)-mandelate dehydrogenase K15054 mdlB; (S)-mandelate dehydrogenase [EC:1.1.99.31] D D560_1102 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D D560_1955 AMP-binding enzyme family protein K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32] D D560_1950 FAD binding domain protein K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40] D D560_0873 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] D D560_3710 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:bho00364] D D560_1121 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D D560_1119 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D D560_2890 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_0746 prolyl oligopeptidase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_1118 catB; muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D D560_0365 tfdF; maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00625 Chloroalkane and chloroalkene degradation [PATH:bho00625] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D D560_1345 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D560_3817 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:bho00361] D D560_1119 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D D560_2890 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_0746 prolyl oligopeptidase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_0365 tfdF; maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D D560_1118 catB; muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D D560_0155 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00623 Toluene degradation [PATH:bho00623] D D560_1531 tmoA; toluene-4-monooxygenase system protein A K15760 tmoA; toluene monooxygenase system protein A [EC:1.14.13.236 1.14.13.-] D D560_1530 putative toluene 4-monooxygenase protein B K15761 tmoB; toluene monooxygenase system protein B [EC:1.14.13.236 1.14.13.-] D D560_1527 rieske domain protein K15762 tmoC; toluene monooxygenase system ferredoxin subunit D D560_1529 mmoB/DmpM family protein K15763 tmoD; toluene monooxygenase system protein D [EC:1.14.13.236 1.14.13.-] D D560_1528 touE; toluene, o-xylene monooxygenase oxygenase subunit K15764 tmoE; toluene monooxygenase system protein E [EC:1.14.13.236 1.14.13.-] D D560_1119 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D D560_1118 catB; muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D D560_2890 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_0746 prolyl oligopeptidase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D560_0365 tfdF; maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00622 Xylene degradation [PATH:bho00622] D D560_1121 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D D560_0155 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D D560_2807 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:bho00643] D D560_0457 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D D560_2925 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D D560_0458 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D560_1654 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0167 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D560_0155 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00791 Atrazine degradation [PATH:bho00791] D D560_0088 amidohydrolase, AtzE family protein K19837 atzE; 1-carboxybiuret hydrolase [EC:3.5.1.131] D D560_2863 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] C 00930 Caprolactam degradation [PATH:bho00930] D D560_1779 acyl-CoA dehydrogenase, N-terminal domain protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D D560_1742 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D560_2810 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D D560_0973 chrR Cupin-like domain protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:bho00626] D D560_3957 zinc-binding dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D D560_1594 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:bho03020] D D560_1403 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D560_1404 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D560_1455 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D D560_3672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D D560_3417 DEAD/DEAH box helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_3416 helicase C-terminal domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:bho03010] D D560_2488 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D D560_3502 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D D560_1425 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D D560_1453 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D D560_1445 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D D560_2595 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D D560_1415 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D D560_1442 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D D560_2028 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D D560_1418 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D D560_1452 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D D560_1414 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D D560_1451 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D D560_1441 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D D560_3372 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D D560_0703 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D D560_1428 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D D560_2597 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D D560_1423 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D D560_2701 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D D560_2190 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D D560_1400 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D D560_1422 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D D560_1419 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D D560_1420 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D D560_1440 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D D560_1443 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D D560_1402 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D D560_2598 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D D560_1401 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10 D D560_1399 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D D560_2027 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D D560_1438 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D D560_1447 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D D560_1456 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D D560_1444 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D D560_2515 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D D560_2751 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D D560_1130 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D D560_1424 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D D560_1421 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D D560_1439 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D D560_0441 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D D560_1131 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D D560_0766 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D D560_1427 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D D560_1446 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D D560_2919 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D D560_2307 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D D560_0767 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D D560_1363 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D D560_2750 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D D560_1450 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D560_3324 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D560_2149 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0796 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_2152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0793 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0001 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_2153 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_0792 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_3979 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:bho00970] D D560_0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_0794 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_2151 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3298 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_0052 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_1783 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_3094 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_0118 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_1552 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D560_2927 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D560_3001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D560_3013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D560_0266 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D D560_0444 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D D560_3002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D560_3012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D560_0246 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0594 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_1393 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0110 tRNA-His K14226 tRNA-His; tRNA His D D560_0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_0795 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_2150 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_0151 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_2669 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_2671 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_3289 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_0628 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_0660 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D560_0633 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D560_2655 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_2931 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_3159 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_1107 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D D560_2760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_1128 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_3146 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_2055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_0166 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_0062 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_3388 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_2926 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1554 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1394 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1396 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D D560_1392 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D D560_2096 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_2676 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_3234 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_1719 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D D560_2004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D560_1553 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D560_1800 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D560_1799 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D D560_1801 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D D560_0319 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D D560_0705 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D560_1307 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D560_1030 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D D560_1031 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D D560_3246 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D560_0198 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D560_1717 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D D560_0067 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D560_0522 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D560_1184 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D D560_0699 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D560_0777 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D560_3274 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D560_3924 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D560_1511 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D560_2128 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D560_0694 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D560_2752 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D560_2753 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D560_2037 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D560_2428 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:bho03060] D D560_1448 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D D560_1397 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D D560_0163 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D D560_3015 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D D560_3014 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D D560_3017 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D D560_1365 membrane protein insertase, YidC/Oxa1 K03217 yidC; YidC/Oxa1 family membrane protein insertase D D560_2183 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D560_1150 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D D560_0613 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D560_0396 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D560_1566 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D D560_1563 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D D560_2322 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D D560_3273 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:bho04122] D D560_3942 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D560_2582 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D D560_0704 sirA-like family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D D560_2637 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D D560_2887 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D D560_2883 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D D560_2888 thiS family protein K03636 moaD; sulfur-carrier protein D D560_1144 moeZ/MoeB domain protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D D560_2889 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D D560_3057 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D D560_2886 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D D560_0603 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:bho03018] D D560_2129 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D D560_2297 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D560_3370 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D D560_1547 helicase conserved C-terminal domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D560_0287 helicase conserved C-terminal domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D560_2672 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D560_0313 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D560_0737 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D D560_0230 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D D560_0374 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D560_0689 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D D560_3141 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D D560_1013 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:bho03030] D D560_2095 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_0805 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_2566 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D560_3102 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D560_3458 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D560_0779 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D560_2331 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D D560_1361 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D560_2600 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D D560_2191 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_2088 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D D560_3486 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:bho03410] D D560_2279 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D560_1237 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D D560_1900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D D560_2553 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D D560_0449 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D D560_0066 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D560_3829 alkA N-terminal domain protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D560_0636 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D D560_2248 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D D560_3299 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D560_1797 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_3920 DHH family protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:bho03420] D D560_2234 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D D560_1475 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D560_0985 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D560_3945 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D D560_2969 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D D560_2825 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_3282 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D D560_3417 DEAD/DEAH box helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_3416 helicase C-terminal domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:bho03430] D D560_0098 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D D560_1008 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D D560_2825 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_3282 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_2718 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D D560_2590 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D D560_3920 DHH family protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_2566 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D560_1361 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D560_3102 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D560_0779 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D560_3458 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D560_2095 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_0805 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_2331 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:bho03440] D D560_3920 DHH family protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_2325 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D D560_3104 recR; recombination protein RecR K06187 recR; recombination protein RecR D D560_3171 recA; protein RecA K03553 recA; recombination protein RecA D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_0309 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D D560_0312 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D D560_0308 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D D560_3639 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D D560_2566 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D560_1361 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D560_3102 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D560_0779 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D560_3458 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D560_2095 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_0805 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_2331 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D D560_1759 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D D560_2596 priB; primosomal replication protein n K02686 priB; primosomal replication protein N C 03450 Non-homologous end-joining D D560_3421 ku protein K10979 ku; DNA end-binding protein Ku C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:bho02010] D D560_2503 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D D560_2504 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D D560_2505 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D D560_2506 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D D560_3330 ABC transporter, substrate-binding, aliphatic sulfonates family protein K15551 tauA; taurine transport system substrate-binding protein D D560_3329 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D D560_0946 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_1341 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_3107 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0929 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0930 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0947 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0948 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_3109 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0931 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_0949 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_1342 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_3108 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_2955 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D D560_2956 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D D560_2957 ABC transporter family protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D D560_0546 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_1325 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_2399 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_0612 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_3644 putative iron binding protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_3124 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_0544 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_1323 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_2396 putative 2-aminoethylphosphonate ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D D560_0611 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_3123 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_3645 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_0547 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_1322 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_2395 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_0609 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_3646 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_2548 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D D560_2551 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D D560_2550 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D D560_2549 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D D560_0762 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D D560_0761 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D D560_0760 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D D560_1581 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D D560_1583 putative virulence protein transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D560_1289 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D560_1585 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D560_1291 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D560_1587 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D560_1290 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D560_0462 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D D560_3615 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D D560_3617 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D D560_3618 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D D560_3619 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D D560_3143 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D D560_3144 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D D560_3145 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D D560_0391 phnD; phosphate/phosphite/phosphonate ABC transporter, periplasmic binding family protein K02044 phnD; phosphonate transport system substrate-binding protein D D560_0393 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D D560_0394 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D D560_0392 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D D560_3676 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D D560_3675 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D D560_3674 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D D560_1906 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D D560_1196 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D D560_1907 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D D560_1908 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D D560_1909 hypothetical protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D D560_2255 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D D560_2254 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D D560_2253 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D D560_1433 putative substrate binding protein of ABC transporter system K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1939 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2262 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0623 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0900 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2275 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3568 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1208 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1219 periplasmic binding family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0960 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0977 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3356 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3823 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3256 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2013 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2336 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2738 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3611 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3621 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1430 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1940 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2263 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0622 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2273 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3567 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1209 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1216 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0957 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0978 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3363 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2012 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2739 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3610 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2264 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1210 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3820 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1217 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1429 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1941 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2269 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2009 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2740 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3609 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3362 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0956 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0979 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1432 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1942 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3566 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1215 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0955 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0980 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0619 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3359 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2008 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2741 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3608 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1211 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1220 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1943 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2265 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3565 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2007 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2742 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3607 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0618 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3357 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3819 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0954 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0981 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0661 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_1813 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_3598 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_0662 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D D560_0663 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D D560_2358 bacterial extracellular solute-binding s, 5 Middle family protein K13889 gsiB; glutathione transport system substrate-binding protein D D560_2359 glutathione transport system permease protein gsiC K13890 gsiC; glutathione transport system permease protein D D560_2360 gsiD; glutathione transport system permease protein gsiD K13891 gsiD; glutathione transport system permease protein D D560_2357 nickel import ATP-binding protein NikE K13892 gsiA; glutathione transport system ATP-binding protein D D560_0047 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D D560_0049 fecCD transport family protein K11605 sitC; manganese/iron transport system permease protein D D560_0050 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D D560_0048 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D D560_2261 bioY family protein K03523 bioY; biotin transport system substrate-specific component D D560_2260 cobalt transport family protein K16783 bioN; biotin transport system permease protein D D560_2259 ABC transporter family protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D D560_3629 putative capsule polysaccharide export inner-membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein D D560_3631 ABC-2 type transporter family protein K09688 kpsM; capsular polysaccharide transport system permease protein D D560_3630 putative capsule polysaccharide exporter, ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D D560_1869 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D D560_1870 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D D560_3918 liporeleasing system, transmembrane, LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D D560_3917 lolD; lipo-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D D560_2333 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D D560_1971 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D D560_1832 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D D560_1904 ftsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D560_1905 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D D560_2575 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D D560_2782 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D D560_0787 ABC transporter family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D D560_1846 ABC transporter family protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D D560_1844 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D D560_0990 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:bho02060] D D560_3252 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D D560_3251 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D D560_3250 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D D560_1825 ptsN; PTS system, nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:bho03070] D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_3015 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D D560_3014 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D D560_1397 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D D560_0163 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D D560_1448 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D D560_3017 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D D560_1365 membrane protein insertase, YidC/Oxa1 K03217 yidC; YidC/Oxa1 family membrane protein insertase D D560_2183 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D560_0396 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D560_1150 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D D560_0613 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D560_1566 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D D560_1563 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:bho02020] D D560_1862 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D560_1863 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D D560_1407 his Kinase A domain protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D D560_3143 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D D560_3213 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D D560_3833 pho; acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D D560_2241 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_0316 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_2243 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D D560_0315 response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D D560_2317 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D D560_1925 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D D560_1111 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D D560_1926 MMPL family protein K07788 mdtB; multidrug efflux pump D D560_1113 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump D D560_1927 mdtC; multidrug resistance protein MdtC K07789 mdtC; multidrug efflux pump D D560_1114 export membrane family protein K07789 mdtC; multidrug efflux pump D D560_1281 copper binding periplasmic CusF family protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D D560_3544 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D D560_3543 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D D560_3546 bacterial flagellin family protein K02406 fliC; flagellin D D560_3545 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D D560_0215 kdpD; sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D D560_0216 kdpE; KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D D560_0210 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D D560_0213 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D D560_0214 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D D560_1326 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_1380 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_2131 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_1327 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_1379 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_2130 response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_1383 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_3068 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_2138 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_2133 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_3556 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_1382 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_2139 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_3555 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_1381 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_0539 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_0282 putative exported protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_1615 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D D560_1362 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D560_1992 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D D560_1990 MBOAT, membrane-bound O-acyltransferase family protein K03739 dltB; membrane protein involved in D-alanine export D D560_1986 phosphopantetheine attachment site family protein K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D D560_2758 hypothetical protein K03740 dltD; D-alanine transfer protein D D560_1987 dltD domain protein K03740 dltD; D-alanine transfer protein D D560_3549 tonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor D D560_0135 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D D560_3244 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D D560_3577 bvgS; virulence sensor protein BvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D D560_3576 bacterial regulatory s, luxR family protein K07690 evgA; two-component system, NarL family, response regulator EvgA D D560_3680 type VII secretion system (T7SS), usher family protein K07347 fimD; outer membrane usher protein D D560_3679 hypothetical protein K07347 fimD; outer membrane usher protein D D560_0836 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D D560_3198 cpaB; flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D D560_0830 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D D560_0829 AAA domain protein K02282 cpaE; pilus assembly protein CpaE D D560_0828 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D D560_0827 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D D560_3203 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D D560_0826 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D D560_3204 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D D560_0825 tetratricopeptide repeat family protein K27079 tadD; tight adherence protein D D D560_3505 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D D560_0169 nitrogen regulatory P-II family protein K04751 glnB; nitrogen regulatory protein P-II 1 D D560_3651 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D D560_3650 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D D560_1161 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D D560_1160 response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D D560_1079 short chain fatty acid transporter family protein K02106 atoE; short-chain fatty acids transporter D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0038 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D D560_0039 dctD; C4-dicarboxylate transport transcriptional regulatory protein dctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D D560_0035 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D D560_1517 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D D560_3194 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D D560_3658 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D D560_2858 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein D D560_3542 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D D560_3540 methyl-accepting chemotaxis (MCP) signaling domain protein K03776 aer; aerotaxis receptor D D560_1412 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D D560_3878 TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D D560_2540 TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D D560_3338 styR; response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D D560_0345 bacterial regulatory s, luxR family protein K14987 fixJ; two-component system, LuxR family, response regulator FixJ D D560_1212 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_1602 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_2846 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D D560_2847 bacterial regulatory, Fis family protein K15012 regA; two-component system, response regulator RegA D D560_1559 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D D560_1558 cytochrome b family protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D D560_1557 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D D560_2144 cyt; cytochrome c-552 K08738 CYC; cytochrome c D D560_2708 cytC; cytochrome c domain protein K08738 CYC; cytochrome c D D560_0318 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D D560_1841 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D D560_0317 cytochrome oxidase subunit II family protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D D560_1842 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D D560_1843 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_3626 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D D560_3944 low molecular weight phosphotyrosine phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D D560_3913 putative RNA polymerase sigma factor fecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1126 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_0144 putative RNA polymerase sigma factor fecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_0923 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1704 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_3927 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1634 fecR family protein K07165 fecR; transmembrane sensor D D560_3410 fecR family protein K07165 fecR; transmembrane sensor D D560_3914 fecR family protein K07165 fecR; transmembrane sensor D D560_0924 fecR family protein K07165 fecR; transmembrane sensor D D560_0942 fecR family protein K07165 fecR; transmembrane sensor D D560_0434 fecR family protein K07165 fecR; transmembrane sensor D D560_1703 fecR family protein K07165 fecR; transmembrane sensor D D560_1109 fecR family protein K07165 fecR; transmembrane sensor D D560_1125 fecR family protein K07165 fecR; transmembrane sensor D D560_3928 fecR family protein K07165 fecR; transmembrane sensor D D560_0388 fecR family protein K07165 fecR; transmembrane sensor D D560_2704 fecR family protein K07165 fecR; transmembrane sensor D D560_0637 fecR family protein K07165 fecR; transmembrane sensor D D560_0360 fecR family protein K07165 fecR; transmembrane sensor D D560_2420 fecR family protein K07165 fecR; transmembrane sensor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:bho04148] D D560_0530 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D D560_1559 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:bho02024] D D560_0689 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D D560_1728 chorismate binding enzyme family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D560_1727 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D D560_2618 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D D560_3786 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D D560_3544 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D D560_3543 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D D560_0216 kdpE; KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D D560_0610 palC; palC domain protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D D560_1433 putative substrate binding protein of ABC transporter system K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1939 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2262 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0623 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0900 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2275 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3568 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1208 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1219 periplasmic binding family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0960 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0977 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3356 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3823 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3256 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2013 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2336 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2738 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3611 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3621 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1430 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1940 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2263 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0622 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2273 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3567 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1209 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1216 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0957 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0978 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3363 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2012 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2739 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3610 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2264 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1210 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3820 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1217 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1429 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1941 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2269 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2009 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2740 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3609 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3362 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0956 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0979 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1432 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1942 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3566 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1215 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0955 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0980 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0619 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3359 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2008 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2741 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3608 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1211 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1220 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1943 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2265 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3565 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2007 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2742 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3607 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0618 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3357 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3819 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0954 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0981 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0669 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1214 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_2804 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1212 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_1602 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_1275 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D D560_2044 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D D560_2965 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3346 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3424 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_0914 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0333 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_1373 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0495 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_3861 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0844 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_1770 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_2829 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0332 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_1372 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0496 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_3853 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_2830 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_1767 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0906 glutathione transport system permease protein gsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0905 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0331 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_1371 N-terminal TM domain of oligopeptide transport permease C family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0498 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_3857 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_2831 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_1765 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0904 dppD3; PepT family domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0903 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_1370 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0499 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_3859 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_2832 nickel import ATP-binding protein NikE K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_1764 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0330 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0329 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D D560_3860 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D D560_1365 membrane protein insertase, YidC/Oxa1 K03217 yidC; YidC/Oxa1 family membrane protein insertase D D560_1397 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D D560_0163 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D D560_1448 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D D560_3017 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D D560_2183 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D560_0396 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D560_1150 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D D560_0613 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D560_2266 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_2267 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3305 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:bho02030] D D560_3658 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D D560_2858 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein D D560_3542 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D D560_3540 methyl-accepting chemotaxis (MCP) signaling domain protein K03776 aer; aerotaxis receptor D D560_1903 cheD chemotactic sensory transduction family protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D D560_3527 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D D560_3534 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D D560_3535 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN C 02040 Flagellar assembly [PATH:bho02040] D D560_3525 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D D560_3526 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D D560_3527 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D D560_3528 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D D560_3530 ATPase FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D D560_3531 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D D560_3532 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D D560_3533 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D D560_3534 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D D560_3535 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D D560_3536 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D D560_3537 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D D560_3538 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D D560_3539 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D D560_3546 bacterial flagellin family protein K02406 fliC; flagellin D D560_3520 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D D560_3521 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D D560_3522 flagellar FliT family protein K02423 fliT; flagellar protein FliT D D560_2255 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D D560_2192 RNA polymerase sigma factor, sigma-70 family protein K03086 rpoD; RNA polymerase primary sigma factor D D560_3544 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D D560_3543 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D D560_1517 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D D560_3545 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:bho04980] D D560_1282 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D D560_1896 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis [PATH:bho05133] D D560_1929 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_1930 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_0529 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_3680 type VII secretion system (T7SS), usher family protein K07347 fimD; outer membrane usher protein D D560_3679 hypothetical protein K07347 fimD; outer membrane usher protein D D560_3678 fhaC; filamentous hemagglutinin transporter protein fhaC K07326 fhaC; hemolysin activation/secretion protein D D560_1081 autotransporter beta-domain protein K12688 sphB1; autotransporter serine protease [EC:3.4.21.-] D D560_3684 filamentous hemagglutinin family N-terminal domain protein K15125 fhaB; filamentous hemagglutinin D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_0675 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D D560_3577 bvgS; virulence sensor protein BvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D D560_3576 bacterial regulatory s, luxR family protein K07690 evgA; two-component system, NarL family, response regulator EvgA C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:bho01501] D D560_1792 major Facilitator Superfamily protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D D560_2968 glycosyl hydrolase family 3 N terminal domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D560_3154 beta-lactamase family protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D D560_2089 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2962 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_3348 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2964 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D D560_3347 mexB; multidrug resistance protein MexB K18138 acrB; multidrug efflux pump D D560_2965 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3346 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3424 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_1469 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2791 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_1805 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D560_2166 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:bho01502] D D560_2175 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D560_2910 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D D560_2168 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D560_2173 glycosyltransferase family 28 C-terminal domain protein K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bho01503] D D560_3213 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D D560_0675 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D D560_1006 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D560_2317 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D D560_1508 dsbA; disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D D560_2089 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2962 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_3348 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2964 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D D560_3347 mexB; multidrug resistance protein MexB K18138 acrB; multidrug efflux pump D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_3488 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D D560_1992 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D D560_1990 MBOAT, membrane-bound O-acyltransferase family protein K03739 dltB; membrane protein involved in D-alanine export D D560_1986 phosphopantetheine attachment site family protein K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D D560_2758 hypothetical protein K03740 dltD; D-alanine transfer protein D D560_1987 dltD domain protein K03740 dltD; D-alanine transfer protein B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:bho01000] C 01001 Protein kinases [BR:bho01001] D D560_1862 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D560_1407 his Kinase A domain protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D D560_2241 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_0316 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_0215 kdpD; sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D D560_1326 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_1380 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_2131 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_3577 bvgS; virulence sensor protein BvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D D560_1190 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D D560_3651 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D D560_1161 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D D560_0038 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D D560_2846 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:bho01009] D D560_1257 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D D560_2233 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D D560_0606 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:bho01002] D D560_3273 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D D560_1922 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D D560_0834 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D D560_3481 glutamine amidotransferase class-I family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D560_3845 guaA; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D560_3508 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D D560_1591 GXGXG motif family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D D560_1628 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D560_1480 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D560_0475 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D560_2614 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D560_3340 peptidase M3 family protein K01414 prlC; oligopeptidase A [EC:3.4.24.70] D D560_0228 putative zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-] D D560_2332 cytosol aminopeptidase family, catalytic domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D D560_1761 peptidase M20/M25/M40 family protein K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D D560_3286 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D D560_1831 peptidase dimerization domain protein K12941 abgB; aminobenzoyl-glutamate utilization protein B D D560_3504 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D D560_1261 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D D560_0301 aminopeptidase P, N-terminal domain protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D D560_2363 metallopeptidase M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D D560_3135 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D D560_2520 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D D560_2580 peptidase M48 family protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D D560_0177 peptidase M48 family protein K07387 K07387; metalloprotease [EC:3.4.24.-] D D560_0293 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D D560_3494 peptidase M50 family protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D D560_3495 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D D560_2362 D-aminopeptidase family protein K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D D560_2287 glucose-phosphotransferase regulator family protein K09933 mtfA; MtfA peptidase D D560_2361 peptidase S58 family protein K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D D560_2317 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D D560_1562 trypsin family protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D D560_1375 prolyl oligopeptidase family protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D D560_0338 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_1287 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_3093 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D D560_3022 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D D560_3963 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D D560_3192 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D D560_3961 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D D560_3959 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D D560_2322 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D D560_0602 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D560_1145 C-terminal processing peptidase family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D D560_3266 pepE; peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D D560_3553 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D560_3724 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D560_1279 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D D560_2356 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D560_2536 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2941 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0843 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_0998 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D560_2026 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein D D560_2617 modulator of DNA gyrase family protein K03568 tldD; TldD protein D D560_2728 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin D D560_0686 hflC; hflC protein K04087 hflC; modulator of FtsH protease HflC D D560_0687 hflK; hflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:bho01003] D D560_1972 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D560_2730 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D560_1469 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2791 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins [BR:bho01005] D D560_3488 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D D560_3487 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D D560_2179 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D D560_3490 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D D560_0070 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D D560_2715 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D D560_1263 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D560_1264 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D560_2564 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D D560_3115 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D D560_1295 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D D560_2294 lipid A 3-O-deacylase family protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D D560_0675 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D D560_2547 lipopolysaccharide kinase family protein K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D D560_0651 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D D560_2714 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D D560_1835 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D D560_1836 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D D560_1887 rfaE; bifunctional protein RfaE, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D D560_1296 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D D560_2574 glycosyltransferase 9 family protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D D560_3883 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D560_1301 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D560_0217 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D560_1816 SIS domain protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D D560_1032 HAD hydrolase, family IIIA domain protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D D560_2494 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D D560_2106 glycosyl transferase 2 family protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bho01011] D D560_3746 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_1577 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D560_0245 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D560_2174 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D D560_2170 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D560_2167 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10] D D560_2175 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D560_2910 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D D560_3553 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D560_3724 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D560_2168 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D560_2173 glycosyltransferase family 28 C-terminal domain protein K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D D560_0071 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D560_2711 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D D560_1469 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2791 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D560_2730 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D560_1805 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D560_2166 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D560_0338 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_1287 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D D560_3022 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D D560_3093 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D D560_1972 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D560_1242 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D D560_1733 3D domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D D560_2496 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D D560_2083 lysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D D560_3460 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D D560_1820 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D D560_1006 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D560_2302 N-acetylmuramoyl-L-alanine amidase family protein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D560_0616 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:bho01004] D D560_2310 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D560_2309 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D560_1872 putative 3-oxoacyl-[acyl-carrier-(ACP)] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D560_2313 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_0646 beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D560_1347 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2311 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2461 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_2842 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_0579 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3837 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1078 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_1167 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D560_3489 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D D560_3043 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2081 enoyl-(Acyl carrier ) reductase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_2082 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D560_3687 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D D560_0673 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D D560_3281 fatty acid desaturase family protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D560_2346 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2372 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D560_2343 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D D560_0576 coA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D D560_0669 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1214 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_2804 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1169 AMP-binding enzyme family protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D D560_2308 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D D560_3706 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D560_1033 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D560_1969 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:bho01008] D D560_3606 aspartate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:bho01006] D D560_2591 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D D560_1129 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D D560_3498 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D D560_2908 hpnD; squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D D560_1009 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D D560_1318 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D D560_1616 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:bho01007] D D560_2004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D560_0319 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D D560_1489 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D D560_2037 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D560_2428 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D D560_0067 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D560_1511 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D560_0522 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D560_3274 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D560_0699 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D560_0777 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D560_3924 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D560_1307 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D560_0694 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D560_1030 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D D560_1031 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D D560_0198 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D560_2128 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D560_3246 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D560_0705 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D560_2752 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D560_2753 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D560_2608 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D D560_3946 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D D560_1384 aminotransferase class-V family protein K14287 ybdL; methionine transaminase [EC:2.6.1.88] D D560_3288 dapC; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D D560_2483 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0690 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_1574 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D560_0650 cys/Met metabolism PLP-dependent enzyme family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D560_0490 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D D560_2689 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_1497 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D D560_2819 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D D560_0726 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D D560_1960 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D560_1286 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D D560_0896 putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2268 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D560_2481 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D560_1330 wbpE; UDP-2-acetamido-2-dideoxy-d-ribo-hex-3-uluronic acid transaminase, wbpE K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:bho00194] D D560_1752 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D D560_1751 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D D560_1750 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D D560_1749 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D D560_1748 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D D560_1747 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D D560_1746 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D D560_1745 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D560_1744 ATP synthase I chain family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:bho03000] D D560_1541 bacterial regulatory helix-turn-helix s, AraC family protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D D560_3809 bacterial regulatory helix-turn-helix s, AraC family protein K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D D560_3812 cupin domain protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT D D560_3827 bacterial regulatory helix-turn-helix s, AraC family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D560_1688 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D560_3829 alkA N-terminal domain protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D560_3948 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D560_0607 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D560_1206 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D560_2636 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D560_3175 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D D560_1140 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D D560_3638 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D D560_1204 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D D560_2338 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D D560_1035 bacterial regulatory helix-turn-helix, lysR family protein K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D D560_0974 bacterial regulatory helix-turn-helix, lysR family protein K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D D560_3826 bacterial regulatory helix-turn-helix, lysR family protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D D560_0872 bacterial regulatory helix-turn-helix, lysR family protein K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D D560_3349 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D D560_0416 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D D560_3711 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D D560_0551 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D D560_0671 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D D560_2394 aminoethylphosphonate catabolism associated LysR transcriptional regulator family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D D560_2054 bacterial regulatory helix-turn-helix, lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D D560_3747 deoR C terminal sensor domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D D560_1087 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D D560_1024 deoR-like helix-turn-helix domain protein K03710 K03710; GntR family transcriptional regulator D D560_2386 gntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D D560_1171 deoR-like helix-turn-helix domain protein K03710 K03710; GntR family transcriptional regulator D D560_0134 bacterial regulatory s, gntR family protein K03710 K03710; GntR family transcriptional regulator D D560_2694 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D D560_0876 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D D560_1143 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D D560_0461 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D D560_1320 bacterial regulatory s, gntR family protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D D560_3782 bacterial regulatory s, gntR family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D D560_1809 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator D D560_1538 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D560_0043 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D560_1778 bacterial regulatory s, tetR family protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D D560_1350 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_1627 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2147 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_3742 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_1187 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2001 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2775 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_3267 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_0677 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D D560_0898 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D D560_0886 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D D560_2977 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D D560_0842 marR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D D560_3696 cueR; cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D D560_0242 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D D560_1234 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D D560_1275 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D D560_0283 bacterial transcriptional regulator family protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D D560_3517 bacterial transcriptional regulator family protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D D560_1077 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D D560_1656 bacterial transcriptional regulator family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D D560_1212 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_1602 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D560_2895 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D D560_3943 rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D D560_2799 nsrR; HTH-type transcriptional repressor nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D D560_2019 helix-turn-helix family protein K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D D560_1292 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D D560_0306 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D D560_2958 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein D D560_1172 helix-turn-helix family protein K07726 K07726; putative transcriptional regulator D D560_2737 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D D560_1390 parB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D560_0235 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D D560_2523 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D D560_3839 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D D560_0543 putative FMN-binding domain protein K07734 paiB; transcriptional regulator D D560_1964 hypothetical protein K07735 algH; putative transcriptional regulator D D560_1278 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D D560_2041 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D D560_2163 mraZ family protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:bho03021] D D560_3417 DEAD/DEAH box helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_3416 helicase C-terminal domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_1455 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D D560_1403 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D560_1404 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D560_3672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D D560_2192 RNA polymerase sigma factor, sigma-70 family protein K03086 rpoD; RNA polymerase primary sigma factor D D560_2315 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D560_2865 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D560_3913 putative RNA polymerase sigma factor fecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1126 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_0144 putative RNA polymerase sigma factor fecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_0923 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1704 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_3927 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D560_1599 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D D560_1517 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D D560_3545 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D D560_2935 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D D560_0382 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D D560_1398 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D D560_1556 glutaredoxin family protein K03599 sspA; stringent starvation protein A D D560_1555 stringent starvation B family protein K03600 sspB; stringent starvation protein B D D560_1946 HAMP domain protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D D560_2316 putative sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D D560_1278 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D D560_3132 greA; transcription elongation factor GreA domain protein K03624 greA; transcription elongation factor GreA D D560_3880 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D D560_0737 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:bho03019] D D560_2297 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D D560_0007 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-] D D560_2323 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D560_2672 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D560_2521 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D D560_1547 helicase conserved C-terminal domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D560_0287 helicase conserved C-terminal domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D560_0313 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D560_3370 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D D560_0737 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D D560_0230 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D D560_0374 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D560_0689 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D D560_3141 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D D560_1013 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D D560_2129 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D D560_1821 P-loop ATPase family protein K06958 rapZ; RNase adapter protein RapZ D D560_2563 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:bho03011] D D560_2488 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D D560_3502 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D D560_1425 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D D560_1453 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D D560_1445 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D D560_2595 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D D560_1415 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D D560_1442 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D D560_2028 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D D560_1418 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D D560_1452 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D D560_1414 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D D560_1451 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D D560_1441 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D D560_3372 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D D560_0703 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D D560_1428 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D D560_2597 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D D560_1423 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D D560_2701 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D D560_2190 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D D560_1400 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D D560_1422 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D D560_1419 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D D560_1420 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D D560_1440 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D D560_1443 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D D560_2598 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D D560_1401 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10 D D560_1399 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D D560_1402 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D D560_2027 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D D560_1438 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D D560_1447 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D D560_1456 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D D560_1444 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D D560_2515 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D D560_2751 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D D560_1130 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D D560_1424 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D D560_1421 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D D560_1439 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D D560_1131 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D D560_0766 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D D560_1427 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D D560_1446 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D D560_2919 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D D560_2307 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D D560_0767 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D D560_1363 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D D560_2750 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D D560_1450 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D560_3324 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D560_0441 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D D560_2153 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_0792 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_3979 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_2149 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0796 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_2152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0793 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0001 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:bho03009] D D560_2323 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D560_2521 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D D560_2324 era; GTP-binding protein Era K03595 era; GTPase D D560_1132 cgtA; obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D D560_1278 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D D560_2935 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D D560_0382 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D D560_1398 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D D560_1049 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D D560_3278 NOL1/NOP2/sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D D560_1163 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D D560_0397 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D D560_3038 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D D560_1388 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D D560_2164 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D D560_1818 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D D560_2303 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D D560_2673 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D D560_3134 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D D560_0033 putative SPOUT methyltransferase family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D D560_3691 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D D560_2379 hypothetical protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D D560_1095 radical SAM superfamily protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D D560_0697 rlmN; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D D560_3697 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D D560_2933 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D D560_2298 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D D560_2432 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D D560_3350 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D D560_0702 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D D560_1173 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D D560_1982 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D D560_3285 prmB; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D D560_0099 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D D560_2297 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D D560_0007 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-] D D560_1965 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D D560_0355 helicase conserved C-terminal domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D D560_2519 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D D560_0691 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D D560_0688 hflX; GTP-binding protein HflX K03665 hflX; GTPase D D560_3077 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D560_3673 relA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D D560_2937 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D D560_2934 hypothetical protein K09748 rimP; ribosome maturation factor RimP D D560_3912 S4 domain protein K14761 rlbA; ribosome-associated protein D D560_0032 hypothetical protein K09710 ybeB; ribosome-associated protein D D560_3007 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor D D560_3133 CRS1 / YhbY domain protein K07574 yhbY; RNA-binding protein D D560_2024 hypothetical protein K09889 yjgA; ribosome-associated protein D D560_1826 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D D560_0437 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase D D560_2306 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:bho03016] D D560_1241 poly A polymerase head domain protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D D560_2004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D560_2128 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D560_3274 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D560_0777 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D560_0522 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D560_0319 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D D560_1511 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D560_3924 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D560_1307 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D560_0705 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D560_3246 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D560_0198 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D560_0067 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D560_0699 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D560_0694 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D560_2752 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D560_2753 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D560_2037 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D560_2428 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D D560_1457 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D D560_1567 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D D560_3229 tRNA pseudouridine synthase family protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D D560_3942 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D560_3077 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D560_1009 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D D560_1374 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D D560_1387 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D D560_1720 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D D560_1364 ribonuclease P family protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D D560_3665 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D D560_1975 RNB domain protein K01147 rnb; exoribonuclease II [EC:3.1.13.1] D D560_0326 heme ABC exporter, ATP-binding protein CcmA K06020 ettA; energy-dependent translational throttle protein EttA D D560_1030 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D D560_1031 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D D560_1489 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D D560_3757 ybaK / prolyl-tRNA synthetases associated domain protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D D560_3725 cytidine and deoxycytidylate deaminase zinc-binding region family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D D560_3207 dihydrouridine synthase family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D D560_0305 TIM-barrel, nifR3 family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D D560_3005 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D D560_0074 putative methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D D560_0701 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D D560_1153 spoU rRNA Methylase family protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D D560_3485 spoU rRNA Methylase family protein K03437 spoU; RNA methyltransferase, TrmH family D D560_2637 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D D560_1737 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D D560_0704 sirA-like family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D D560_3940 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D D560_3461 glycine cleavage T-C-terminal barrel domain protein K06980 ygfZ; tRNA-modifying protein YgfZ D D560_0667 S-adenosyl-L-methionine-dependent methyltransferase family protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D D560_3020 queuosine biosynthesis family protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D D560_1083 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D D560_3765 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D560_3764 radical SAM superfamily protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D D560_2974 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D D560_0742 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D D560_0128 selU; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D D560_3018 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D D560_0064 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D D560_2246 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D D560_3712 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D D560_1005 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D D560_1270 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D D560_0988 thiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D D560_2672 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D560_3370 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:bho03012] D D560_2936 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D D560_3247 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D D560_3284 ABC transporter family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D D560_3501 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D D560_1395 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1417 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1416 translation elongation factor G K02355 fusA; elongation factor G D D560_2117 translation elongation factor G K02355 fusA; elongation factor G D D560_1718 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D D560_1105 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D D560_3499 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D D560_1104 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D D560_0440 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D D560_1449 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D D560_3061 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D D560_0816 efp; translation elongation factor P K02356 efp; elongation factor P D D560_3922 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D D560_1545 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D D560_3763 RF-1 domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:bho03110] D D560_2898 istB-like ATP binding family protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D D560_3962 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D D560_1280 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D D560_0230 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D D560_3938 hscA; fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D D560_1684 hsp70 family protein K04046 yegD; hypothetical chaperone protein D D560_0374 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D560_0229 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D D560_3052 dnaJ C terminal domain protein K05516 cbpA; curved DNA-binding protein D D560_3939 hscB; fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D D560_2369 hsp33 family protein K04083 hslO; molecular chaperone Hsp33 D D560_0232 grpE family protein K03687 GRPE; molecular chaperone GrpE D D560_3193 hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D D560_0373 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D D560_2317 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D D560_3135 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D D560_1745 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D560_1150 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D D560_3701 heavy-metal resistance family protein K06006 cpxP; periplasmic protein CpxP/Spy D D560_1203 hypothetical protein K09796 pccA; periplasmic copper chaperone A D D560_0069 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D D560_3689 surA N-terminal domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D D560_2923 FKBP-type peptidyl-prolyl cis-trans isomerase family protein K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D D560_2256 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D D560_3315 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D D560_1051 surA N-terminal domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D D560_0736 thioredoxin K03671 TXN; thioredoxin D D560_3715 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D D560_1149 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D D560_1103 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D D560_1508 dsbA; disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D D560_1735 disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D D560_1459 thioredoxin family protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D D560_0250 thioredoxin-like domain protein K03805 dsbG; thiol:disulfide interchange protein DsbG C 04131 Membrane trafficking [BR:bho04131] D D560_0698 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D560_3040 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D560_1147 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D D560_1046 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D D560_2345 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome [BR:bho03051] D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:bho03032] D D560_2088 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D D560_2675 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D D560_2755 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D D560_2489 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D D560_1362 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D560_2600 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D D560_2191 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_2566 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D560_1361 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D560_2331 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D D560_0779 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D560_3458 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D560_2095 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_0805 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_3102 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D560_3486 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D D560_1011 hda; dnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D D560_2480 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D D560_1360 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D D560_0733 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D560_0735 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D560_1339 topB; DNA topoisomerase III family protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:bho03036] D D560_2323 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D560_2616 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D D560_2675 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D D560_2755 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D D560_2489 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D D560_3052 dnaJ C terminal domain protein K05516 cbpA; curved DNA-binding protein D D560_3053 merR HTH regulatory family protein K18997 cbpM; chaperone modulatory protein CbpM D D560_1362 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D560_2843 ferritin-like domain protein K04047 dps; starvation-inducible DNA-binding protein D D560_3637 ferritin-like domain protein K04047 dps; starvation-inducible DNA-binding protein D D560_0306 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D D560_0689 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D D560_1204 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D D560_1350 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_1627 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2147 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_3742 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_1187 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2001 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2775 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_3267 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D560_2250 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D D560_1918 scpA/B family protein K05896 scpA; segregation and condensation protein A D D560_2932 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D D560_2177 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D D560_2367 septum formation initiator family protein K05589 ftsB; cell division protein FtsB D D560_1905 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D D560_2166 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D560_0201 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D D560_2165 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D D560_2176 cell division FtsQ family protein K03589 ftsQ; cell division protein FtsQ D D560_2171 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D D560_1904 ftsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D560_2178 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D560_2141 cell division ZapA family protein K09888 zapA; cell division protein ZapA D D560_1924 hypothetical protein K18778 zapD; cell division protein ZapD D D560_2416 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE D D560_1006 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D560_2089 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2962 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_3348 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D D560_0320 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D D560_0321 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D D560_0880 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D D560_0322 septum formation topological specificity factor MinE family protein K03608 minE; cell division topological specificity factor D D560_0881 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D D560_1809 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator D D560_1802 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D D560_1803 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D D560_1804 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D D560_1806 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D D560_1389 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D D560_1390 parB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D560_0733 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D560_0735 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D560_1387 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D D560_1388 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D D560_1267 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D D560_3091 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D D560_0520 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D D560_3843 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D D560_1462 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:bho03400] D D560_1819 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D D560_3830 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D D560_3437 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D D560_1237 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D D560_2553 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D D560_1900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D D560_2279 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D560_3417 DEAD/DEAH box helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_3416 helicase C-terminal domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D D560_1931 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D560_3261 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D560_3827 bacterial regulatory helix-turn-helix s, AraC family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D560_1688 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D560_1689 2OG-Fe(II) oxygenase superfamily protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D D560_2248 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D D560_0066 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D560_3829 alkA N-terminal domain protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D560_0636 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D D560_0449 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D D560_3299 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D560_1797 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D560_3920 DHH family protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D560_2252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D D560_0754 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D560_1475 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D560_0985 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D560_3945 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D D560_2969 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D D560_2825 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_3282 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D560_1403 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D560_1404 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D560_1455 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D D560_3672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D D560_2234 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D D560_0098 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D D560_1008 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D D560_2718 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D D560_2590 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D D560_2566 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D560_1361 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D560_2331 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D D560_0779 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D560_3458 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D560_2095 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_0805 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D560_3102 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_3171 recA; protein RecA K03553 recA; recombination protein RecA D D560_0309 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D D560_0312 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D D560_0308 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D D560_1759 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D D560_2596 priB; primosomal replication protein n K02686 priB; primosomal replication protein N D D560_2913 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D D560_3639 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D D560_2325 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D D560_3104 recR; recombination protein RecR K06187 recR; recombination protein RecR D D560_0237 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D D560_3165 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC D D560_0024 ftsK/SpoIIIE family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D D560_3421 ku protein K10979 ku; DNA end-binding protein Ku D D560_2480 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D D560_1360 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D D560_2675 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D D560_0306 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D D560_2755 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D D560_2489 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D D560_0313 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D560_2616 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D D560_3959 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D D560_3768 putative cell division inhibitor protein K14160 imuA; protein ImuA D D560_3770 putative required for the error-prone processing of DNA lesions along with dnaE2 and imuA K14161 imuB; protein ImuB D D560_3771 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D D560_3173 recX family protein K03565 recX; regulatory protein D D560_1760 uvrD/REP helicase N-terminal domain protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D D560_2430 DEAD/DEAH box helicase family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D D560_1996 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D560_1995 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:bho03029] D D560_1558 cytochrome b family protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D D560_2936 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D D560_3247 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D D560_3501 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D D560_1395 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1417 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1416 translation elongation factor G K02355 fusA; elongation factor G D D560_2117 translation elongation factor G K02355 fusA; elongation factor G D D560_2324 era; GTP-binding protein Era K03595 era; GTPase D D560_2037 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D560_0777 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D560_1307 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D560_1511 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D560_1553 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D560_1800 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D560_1799 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D D560_1801 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D D560_2769 DNA/RNA non-specific endonuclease family protein K01173 ENDOG; endonuclease G, mitochondrial D D560_1477 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D D560_3492 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D D560_0230 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D D560_0232 grpE family protein K03687 GRPE; molecular chaperone GrpE D D560_0374 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D560_0373 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D D560_0229 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D D560_3942 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D560_3939 hscB; fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D D560_1103 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D D560_0520 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D D560_1616 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D560_1615 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D D560_1365 membrane protein insertase, YidC/Oxa1 K03217 yidC; YidC/Oxa1 family membrane protein insertase D D560_0753 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D D560_1613 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D D560_1617 tat (twin-arginine translocation) pathway signal sequence domain protein K07152 SCO1; protein SCO1 D D560_3344 ahpC/TSA family protein K07152 SCO1; protein SCO1 D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:bho02000] D D560_2575 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D D560_2782 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D D560_0884 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D D560_2452 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D D560_0787 ABC transporter family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D D560_1846 ABC transporter family protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D D560_1844 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D D560_0990 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D D560_2162 heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein D D560_2503 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D D560_2504 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D D560_2505 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D D560_2506 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D D560_2955 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D D560_2956 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D D560_2957 ABC transporter family protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D D560_3330 ABC transporter, substrate-binding, aliphatic sulfonates family protein K15551 tauA; taurine transport system substrate-binding protein D D560_3329 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D D560_0946 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_1341 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_3107 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0929 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D D560_0930 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0947 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0948 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_3109 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D D560_0931 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_0949 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_1342 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_3108 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D D560_0546 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_1325 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_2399 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_0612 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_3644 putative iron binding protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_3124 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D D560_0544 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_1323 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_2396 putative 2-aminoethylphosphonate ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D D560_0611 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_3123 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_3645 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D D560_0547 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_1322 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_2395 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_0609 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_3646 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D D560_2548 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D D560_2551 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D D560_2550 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D D560_2549 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D D560_0610 palC; palC domain protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D D560_0762 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D D560_0761 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D D560_0760 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D D560_3720 NMT1-like family protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D D560_0084 NMT1-like family protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D D560_3719 binding--dependent transport system inner membrane component family protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D D560_0181 binding--dependent transport system inner membrane component family protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D D560_0085 binding--dependent transport system inner membrane component family protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D D560_3721 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D D560_3327 putative taurine ATP-binding component of a transportsystem K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D D560_0086 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D D560_0180 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D D560_3615 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D D560_3617 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D D560_3618 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D D560_3619 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D D560_0462 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D D560_3773 hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein D D560_3775 ABC transporter family protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D D560_1583 putative virulence protein transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D560_1289 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D560_1585 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D560_1291 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D560_1587 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D560_1290 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D560_1581 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D D560_0717 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D D560_3143 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D D560_3144 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D D560_3145 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D D560_0391 phnD; phosphate/phosphite/phosphonate ABC transporter, periplasmic binding family protein K02044 phnD; phosphonate transport system substrate-binding protein D D560_0393 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D D560_0394 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D D560_0392 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D D560_3676 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D D560_3675 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D D560_3674 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D D560_1906 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D D560_1196 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D D560_1907 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D D560_1908 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D D560_1909 hypothetical protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D D560_2255 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D D560_2254 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D D560_2253 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D D560_1433 putative substrate binding protein of ABC transporter system K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1939 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2262 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0623 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0900 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2275 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3568 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1208 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1219 periplasmic binding family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0960 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_0977 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3356 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3823 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3256 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2013 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2336 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_2738 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3611 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_3621 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D D560_1430 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1940 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2263 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0622 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2273 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3567 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1209 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_1216 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0957 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_0978 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3363 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2012 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2739 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_3610 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D D560_2264 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1210 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3820 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1217 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1429 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1941 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2269 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2009 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_2740 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3609 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_3362 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0956 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_0979 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D D560_1432 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1942 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3566 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1215 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0955 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0980 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_0619 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3359 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2008 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_2741 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_3608 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D D560_1211 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1220 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_1943 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2265 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3565 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2007 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_2742 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3607 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0618 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3357 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_3819 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0954 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0981 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D D560_0661 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_1813 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_3598 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D D560_0662 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D D560_0663 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D D560_2951 ABC transporter substrate binding family protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D D560_2952 branched-chain amino acid transport system / permease component family protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D D560_2954 ABC transporter family protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D D560_3559 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_2201 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_2202 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_3453 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_3257 ehuB; ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_3718 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D D560_3558 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D D560_3452 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D D560_3258 ehuC; ectoine/hydroxyectoine ABC transporter, permease protein EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein D D560_3259 ehuD; ectoine/hydroxyectoine ABC transporter, permease protein EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein D D560_3260 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D D560_3557 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D D560_2358 bacterial extracellular solute-binding s, 5 Middle family protein K13889 gsiB; glutathione transport system substrate-binding protein D D560_2359 glutathione transport system permease protein gsiC K13890 gsiC; glutathione transport system permease protein D D560_2360 gsiD; glutathione transport system permease protein gsiD K13891 gsiD; glutathione transport system permease protein D D560_2357 nickel import ATP-binding protein NikE K13892 gsiA; glutathione transport system ATP-binding protein D D560_0914 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0333 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_1373 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0495 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_3861 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0844 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_1770 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_2829 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D560_0332 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_1372 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0496 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_3853 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_2830 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_1767 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0906 glutathione transport system permease protein gsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein D D560_0905 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0331 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_1371 N-terminal TM domain of oligopeptide transport permease C family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0498 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_3857 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_2831 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_1765 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D560_0904 dppD3; PepT family domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0903 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_1370 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0499 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_3859 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_2832 nickel import ATP-binding protein NikE K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_1764 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0330 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D560_0329 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D D560_3860 oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D D560_1699 periplasmic binding family protein K25132 hmuT; heme transport system substrate-binding protein D D560_1698 fecCD transport family protein K25133 hmuU; heme transport system permease protein D D560_1697 hmuV; hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D D560_0161 periplasmic binding family protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D D560_0159 fecCD transport family protein K25283 yclO; iron-siderophore transport system permease protein D D560_0160 fecCD transport family protein K25284 yclN; iron-siderophore transport system permease protein D D560_0158 ABC transporter family protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D D560_0533 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D D560_1893 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D D560_0538 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D D560_0047 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D D560_0049 fecCD transport family protein K11605 sitC; manganese/iron transport system permease protein D D560_0050 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D D560_0048 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D D560_2261 bioY family protein K03523 bioY; biotin transport system substrate-specific component D D560_2260 cobalt transport family protein K16783 bioN; biotin transport system permease protein D D560_2259 ABC transporter family protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D D560_1271 periplasmic solute binding family protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D D560_1272 ABC 3 transport family protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D D560_1273 ABC transporter family protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D D560_3631 ABC-2 type transporter family protein K09688 kpsM; capsular polysaccharide transport system permease protein D D560_3629 putative capsule polysaccharide export inner-membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein D D560_3630 putative capsule polysaccharide exporter, ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D D560_1869 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D D560_1870 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D D560_2333 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D D560_1971 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D D560_1832 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D D560_3918 liporeleasing system, transmembrane, LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D D560_3917 lolD; lipo-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D D560_1904 ftsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D560_1905 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D D560_3427 inner membrane transport permease yhhJ K01992 ABC-2.P; ABC-2 type transport system permease protein D D560_2101 inner membrane transport permease yhhJ K01992 ABC-2.P; ABC-2 type transport system permease protein D D560_2980 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D560_1579 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D560_3754 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D560_1580 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D D560_2979 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D D560_3753 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D D560_2544 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D D560_3686 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D D560_2603 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D D560_1808 na+ symporter family protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D D560_2916 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D D560_2059 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D D560_1120 sugar (and other) transporter family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D D560_3811 major Facilitator Superfamily protein K25494 nimT; MFS transporter, CP family, 2-nitroimidazole transporter D D560_3792 major Facilitator Superfamily protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D D560_2249 major Facilitator Superfamily protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D D560_1792 major Facilitator Superfamily protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D D560_3399 major Facilitator Superfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D D560_0897 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D D560_0765 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D D560_3805 ydhP; inner membrane transport protein ydhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D D560_3814 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D D560_2475 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D D560_0017 H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D D560_0060 major Facilitator Superfamily protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D D560_1623 major Facilitator Superfamily protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D D560_2972 sugar (and other) transporter family protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D D560_2987 sugar (and other) transporter family protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D D560_2345 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family D D560_3252 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D D560_3251 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D D560_3250 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D D560_1825 ptsN; PTS system, nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D D560_2743 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family D D560_2639 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_0853 glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_1536 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_3603 glutathione S-transferase GST-4.5 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_1474 glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_0617 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_3049 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_2057 glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D D560_1556 glutaredoxin family protein K03599 sspA; stringent starvation protein A D D560_2329 inhibitor of apoptosis-promoting Bax1 family protein K19416 yccA; modulator of FtsH protease D D560_1560 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D D560_0801 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D D560_0078 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D D560_0356 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D D560_0171 mechanosensitive ion channel family protein K16053 ybdG; miniconductance mechanosensitive channel D D560_0674 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D D560_2678 motA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D D560_2717 motA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D D560_2679 biopolymer transport ExbD/TolR family protein K03559 exbD; biopolymer transport protein ExbD D D560_2716 biopolymer transport ExbD/TolR family protein K03559 exbD; biopolymer transport protein ExbD D D560_2126 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D D560_2125 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D D560_2827 corA-like Mg2+ transporter family protein K03284 corA; magnesium transporter D D560_2906 crcB-like family protein K06199 crcB; fluoride exporter D D560_1351 bestrophin, RFP-TM, chloride channel family protein K08994 yneE; ion channel-forming bestrophin family protein D D560_2478 ompA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D D560_2809 outer membrane beta-barrel domain protein K06076 fadL; long-chain fatty acid transport protein D D560_3680 type VII secretion system (T7SS), usher family protein K07347 fimD; outer membrane usher protein D D560_3679 hypothetical protein K07347 fimD; outer membrane usher protein D D560_0137 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D D560_1081 autotransporter beta-domain protein K12688 sphB1; autotransporter serine protease [EC:3.4.21.-] D D560_3549 tonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor D D560_2404 tonB dependent receptor family protein K16090 fiu; catecholate siderophore receptor D D560_1895 tonB-dependent Receptor Plug domain protein K16092 btuB; vitamin B12 transporter D D560_3080 tonB dependent receptor family protein K15721 fyuA; pesticin/yersiniabactin receptor D D560_0140 tonB dependent receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_3401 tonB-dependent siderophore receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_3915 tonB-dependent siderophore receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_3808 fptA; fe(3+)-pyochelin receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_1110 tonB-dependent siderophore receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_1631 tonB-dependent Receptor Plug domain protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_3929 tonB-dependent Receptor Plug domain protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_0361 tonB-dependent siderophore receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_0387 tonB-dependent siderophore receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_1630 tonB dependent receptor family protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D D560_1491 tonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D D560_1701 tonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D D560_1201 tonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D D560_3411 tonB-dependent Receptor Plug domain protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_3413 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0059 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0925 tonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0432 tonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_1839 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_2079 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0808 tonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_2422 tonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_1124 tonB-dependent Receptor Plug domain protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0863 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_0405 tonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_1268 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_0788 outer membrane efflux family protein K12543 lapE; outer membrane protein, adhesin transport system D D560_2965 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3346 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3424 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3626 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D D560_3492 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D D560_0692 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D D560_0100 nlpB/DapX lipofamily protein K07287 bamC; outer membrane protein assembly factor BamC D D560_2431 yfiO; outer membrane assembly lipoYfiO family protein K05807 bamD; outer membrane protein assembly factor BamD D D560_0243 smpA / OmlA family protein K06186 bamE; outer membrane protein assembly factor BamE D D560_0518 surface antigen family protein K07278 tamA; translocation and assembly module TamA D D560_0519 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA D D560_1833 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D D560_1834 lipopolysaccharide-assembly, LptC-related family protein K11719 lptC; lipopolysaccharide export system protein LptC D D560_1052 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein D D560_0778 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein D D560_3008 transporter associated domain protein K06189 corC; hemolysin (HlyC) family protein D D560_0879 lysP; lysine-specific permease K11733 lysP; lysine-specific permease D D560_0368 arginine/agmatine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D D560_0370 arginine/agmatine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D D560_0747 ZIP Zinc transporter family protein K16267 zipB; zinc and cadmium transporter D D560_3795 ZIP Zinc transporter family protein K07238 TC.ZIP; zinc transporter, ZIP family D D560_2964 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D D560_3347 mexB; multidrug resistance protein MexB K18138 acrB; multidrug efflux pump D D560_1926 MMPL family protein K07788 mdtB; multidrug efflux pump D D560_1113 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump D D560_1927 mdtC; multidrug resistance protein MdtC K07789 mdtC; multidrug efflux pump D D560_1114 export membrane family protein K07789 mdtC; multidrug efflux pump D D560_0204 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump D D560_0721 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D D560_0803 eamA-like transporter family protein K15268 eamA; O-acetylserine/cysteine efflux transporter D D560_2869 rhtA; inner membrane transporter rhtA K11939 rhtA; inner membrane transporter RhtA D D560_2834 gntP permease family protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D D560_2770 BCCT transporter family protein K02168 betT; choline/glycine/proline betaine transport protein D D560_3056 pitA; low-affinity inorganic phosphate transporter 1 K16322 pit; low-affinity inorganic phosphate transporter D D560_0206 sodium:solute symporter family protein K14393 actP; cation/acetate symporter D D560_0035 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D D560_1232 nhaA; na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D D560_1601 sodium/hydrogen exchanger family protein K03316 nhaP; Na+:H+ antiporter D D560_1157 cation transport family protein K03498 trkH; trk/ktr system potassium uptake protein D D560_1158 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K03499 trkA; trk/ktr system potassium uptake protein D D560_3128 uracil-xanthine permease family protein K09016 rutG; putative pyrimidine permease RutG D D560_0627 pbuX; xanthine permease family protein K16345 xanP; xanthine permease XanP D D560_3713 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D D560_0400 benzoate transporter family protein K05782 benE; benzoate membrane transport protein D D560_2721 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D D560_3641 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D D560_2871 chromate transporter family protein K07240 chrA; chromate transporter D D560_2872 chromate transporter family protein K07240 chrA; chromate transporter D D560_1117 antisigma-factor antagonist, STAS K03321 TC.SULP; sulfate permease, SulP family D D560_0772 sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family D D560_3042 sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family D D560_3878 TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D D560_2540 TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D D560_3589 TRAP transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein D D560_3874 tripartite ATP-independent periplasmic transporter, DctQ family K21394 yiaM; TRAP-type transport system small permease protein D D560_3588 tripartite ATP-independent periplasmic transporter, DctQ family K21394 yiaM; TRAP-type transport system small permease protein D D560_3879 TRAP transporter solute receptor, DctP family protein K21395 yiaO; TRAP-type transport system periplasmic protein D D560_0744 na+/Pi-cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D D560_2666 arsB; arsenite/antimonite efflux pump membrane family protein K03893 arsB; arsenical pump membrane protein D D560_0339 sodium Bile acid symporter family protein K03325 ACR3; arsenite transporter D D560_3734 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K05559 phaA; multicomponent K+:H+ antiporter subunit A D D560_3733 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K05560 phaC; multicomponent K+:H+ antiporter subunit C D D560_3732 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K05561 phaD; multicomponent K+:H+ antiporter subunit D D D560_3731 na+/H+ ion antiporter subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D D560_3730 multiple resistance and pH regulation F family protein K05563 phaF; multicomponent K+:H+ antiporter subunit F D D560_3729 monovalent cation/proton antiporter, MnhG/PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D D560_2711 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D D560_1002 membrane transport family protein K13936 mdcF; malonate transporter and related proteins D D560_1787 membrane transport family protein K24180 mleP; malate permease and related proteins D D560_2682 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein D D560_1546 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D D560_0254 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D D560_0341 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D D560_3054 azlC family protein K26605 azlC; branched chain amino acid efflux pump D D560_0289 azlC family protein K26605 azlC; branched chain amino acid efflux pump D D560_3055 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump D D560_0288 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump D D560_1383 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_3068 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_2138 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_2133 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_3556 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D D560_1382 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_2139 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_3555 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D D560_1381 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_0539 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_0282 putative exported protein K07795 tctC; putative tricarboxylic transport membrane protein D D560_3613 conserved hypothetical integral membrane family protein K09125 yhhQ; queuosine precursor transporter D D560_3466 VIT family protein K22736 VIT; vacuolar iron transporter family protein D D560_3506 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D D560_3402 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D D560_2171 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D D560_0890 hypothetical protein K23242 mntP; manganese efflux pump family protein D D560_2440 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter D D560_2438 fe2+ transport family protein K07230 p19; periplasmic iron binding protein D D560_1269 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D D560_1974 tonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB D D560_2677 tonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB D D560_2122 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D D560_2124 tolA; protein TolA K03646 tolA; colicin import membrane protein D D560_2123 tolB; tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D D560_0016 efflux transporter, RND family, MFP subunit K03543 emrA; membrane fusion protein, multidrug efflux system D D560_0786 type I secretion membrane fusion, HlyD family protein K12542 lapC; membrane fusion protein, adhesin transport system D D560_2089 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2962 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_3348 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D D560_1925 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D D560_1111 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D D560_0991 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D D560_3161 entericidin EcnA/B family protein K16348 ecnB; entericidin B D D560_3414 putative mg(2+) transport ATPase protein c K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D D560_0926 mltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:bho02044] D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_0787 ABC transporter family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D D560_0786 type I secretion membrane fusion, HlyD family protein K12542 lapC; membrane fusion protein, adhesin transport system D D560_0788 outer membrane efflux family protein K12543 lapE; outer membrane protein, adhesin transport system D D560_1922 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D D560_3194 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D D560_3227 fimV domain protein K08086 fimV; pilus assembly protein FimV D D560_0834 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D D560_3198 cpaB; flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D D560_0830 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D D560_0829 AAA domain protein K02282 cpaE; pilus assembly protein CpaE D D560_0828 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D D560_0827 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D D560_3203 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D D560_0826 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D D560_3204 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D D560_0825 tetratricopeptide repeat family protein K27079 tadD; tight adherence protein D D D560_0836 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D D560_1993 YGGT family protein K02221 yggT; YggT family protein D D560_3889 metallo-beta-lactamase superfamily protein K02238 comEC; competence protein ComEC D D560_3890 comEC/Rec2-related domain protein K02238 comEC; competence protein ComEC D D560_0710 type II/IV secretion system family protein K02243 comGA; competence protein ComGA D D560_3526 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D D560_3528 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D D560_3530 ATPase FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D D560_3535 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D D560_3536 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D D560_3537 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D D560_3538 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D D560_3539 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D D560_1735 disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D D560_0137 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D D560_1081 autotransporter beta-domain protein K12688 sphB1; autotransporter serine protease [EC:3.4.21.-] D D560_1929 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_1930 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_0529 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_3680 type VII secretion system (T7SS), usher family protein K07347 fimD; outer membrane usher protein D D560_3679 hypothetical protein K07347 fimD; outer membrane usher protein D D560_2183 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D560_1150 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D D560_3015 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D D560_1397 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D D560_3014 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D D560_0163 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D D560_1448 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D D560_0613 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D560_0396 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D560_3017 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D D560_1365 membrane protein insertase, YidC/Oxa1 K03217 yidC; YidC/Oxa1 family membrane protein insertase D D560_1566 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D D560_1563 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:bho02042] D D560_2266 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_2267 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D D560_3305 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:bho02022] D D560_1862 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D560_1863 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D D560_1407 his Kinase A domain protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D D560_3213 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D D560_2241 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_0316 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D D560_2243 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D D560_0315 response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D D560_0215 kdpD; sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D D560_0216 kdpE; KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D D560_1326 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_1380 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_2131 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D D560_1327 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_1379 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_2130 response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D D560_3169 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D D560_2680 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D D560_1134 putative transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator D D560_0527 putative transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator D D560_3244 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D D560_3577 bvgS; virulence sensor protein BvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D D560_3576 bacterial regulatory s, luxR family protein K07690 evgA; two-component system, NarL family, response regulator EvgA D D560_1190 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D D560_3651 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D D560_3650 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D D560_1161 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D D560_1160 response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D D560_0038 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D D560_0039 dctD; C4-dicarboxylate transport transcriptional regulatory protein dctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D D560_1412 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D D560_3338 styR; response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D D560_0345 bacterial regulatory s, luxR family protein K14987 fixJ; two-component system, LuxR family, response regulator FixJ D D560_2846 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D D560_2847 bacterial regulatory, Fis family protein K15012 regA; two-component system, response regulator RegA C 02035 Bacterial motility proteins [BR:bho02035] D D560_1903 cheD chemotactic sensory transduction family protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D D560_3658 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D D560_2858 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein D D560_3542 methyl-accepting chemotaxis (MCP) signaling domain protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D D560_3540 methyl-accepting chemotaxis (MCP) signaling domain protein K03776 aer; aerotaxis receptor D D560_3528 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D D560_3530 ATPase FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D D560_3531 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D D560_3536 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D D560_3537 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D D560_3538 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D D560_3539 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D D560_3527 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D D560_3534 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D D560_3535 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D D560_3526 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D D560_3533 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D D560_3525 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D D560_3532 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D D560_3546 bacterial flagellin family protein K02406 fliC; flagellin D D560_3520 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D D560_3521 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D D560_3522 flagellar FliT family protein K02423 fliT; flagellar protein FliT D D560_3544 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D D560_3543 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D D560_3545 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D D560_2255 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D D560_3518 flaG family protein K06603 flaG; flagellar protein FlaG D D560_3194 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D D560_1922 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D D560_0836 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D D560_0834 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D D560_3198 cpaB; flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D D560_0830 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D D560_0829 AAA domain protein K02282 cpaE; pilus assembly protein CpaE D D560_0828 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D D560_1929 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_1930 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_0529 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D D560_3680 type VII secretion system (T7SS), usher family protein K07347 fimD; outer membrane usher protein D D560_3679 hypothetical protein K07347 fimD; outer membrane usher protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:bho04812] D D560_1802 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D D560_2178 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D560_2177 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D D560_0320 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D D560_0321 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D D560_0880 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D D560_0322 septum formation topological specificity factor MinE family protein K03608 minE; cell division topological specificity factor D D560_0881 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D D560_1389 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D D560_1390 parB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:bho04147] D D560_0626 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D D560_2366 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D560_3040 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D560_3041 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D D560_1046 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D560_0374 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D560_0230 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D D560_0471 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D D560_3846 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D D560_1395 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1417 translation elongation factor Tu K02358 tuf; elongation factor Tu D D560_1457 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D D560_1567 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D D560_1807 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D D560_2603 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D D560_0669 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1214 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_2804 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D560_1501 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_2811 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_0758 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D560_1257 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D560_2713 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D D560_1847 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D D560_0172 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2066 lyase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2473 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D D560_2687 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D D560_0458 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D560_2613 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D560_1461 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D D560_2146 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D560_1058 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D D560_1861 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_3903 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D560_0307 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D560_2520 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D D560_3333 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2415 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_3692 putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D560_2499 electron transfer flavodomain protein K03522 fixB; electron transfer flavoprotein alpha subunit D D560_3447 glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D560_0164 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D560_1147 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:bho02048] D D560_3911 restriction endonuclease family protein K07448 mrr; restriction system protein D D560_2467 yhaV; toxin YhaV K19155 yhaV; toxin YhaV [EC:3.1.-.-] D D560_2466 htrA suppressor protein K19156 prlF; antitoxin PrlF D D560_2178 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D560_1802 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D D560_0733 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D560_0735 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D560_2004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D560_2314 hypothetical protein K19168 cptA; toxin CptA D D560_2391 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB D D560_3942 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:bho04090] C 01504 Antimicrobial resistance genes [BR:bho01504] D D560_3154 beta-lactamase family protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D D560_1992 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D D560_1990 MBOAT, membrane-bound O-acyltransferase family protein K03739 dltB; membrane protein involved in D-alanine export D D560_1986 phosphopantetheine attachment site family protein K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D D560_2758 hypothetical protein K03740 dltD; D-alanine transfer protein D D560_1987 dltD domain protein K03740 dltD; D-alanine transfer protein D D560_3213 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D D560_2089 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2962 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D560_3348 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D D560_2964 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D D560_3347 mexB; multidrug resistance protein MexB K18138 acrB; multidrug efflux pump D D560_2965 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3346 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3424 outer membrane protein oprM K18139 oprM; outer membrane protein, multidrug efflux system D D560_3696 cueR; cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D D560_1888 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D D560_3576 bacterial regulatory s, luxR family protein K07690 evgA; two-component system, NarL family, response regulator EvgA D D560_3349 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:bho00536] D D560_3684 filamentous hemagglutinin family N-terminal domain protein K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:bho03100] D D560_0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_0794 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_2151 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_3298 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D560_0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_0052 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_1783 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_3094 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_0118 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D560_1552 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D560_2927 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D560_3001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D560_3013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D560_0266 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D D560_0444 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D D560_3002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D560_3012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D560_0246 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0594 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_1393 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D560_0110 tRNA-His K14226 tRNA-His; tRNA His D D560_0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_0795 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_2150 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D560_0151 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_2669 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_2671 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_3289 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_0628 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D560_0660 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D560_0633 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D560_2655 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_2931 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_3159 tRNA-Met K14230 tRNA-Met; tRNA Met D D560_1107 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D D560_2760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_1128 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_3146 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D560_2055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_0166 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_0062 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_3388 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D560_2926 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1554 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1394 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D560_1396 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D D560_1392 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D D560_2096 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_2676 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_3234 tRNA-Val K14237 tRNA-Val; tRNA Val D D560_1719 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D D560_2149 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0796 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D560_2152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0793 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_0001 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D560_2153 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_0792 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D560_3979 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D D560_1344 short chain dehydrogenase family protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D D560_0587 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D D560_3923 short chain dehydrogenase family protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320] D D560_0921 GMC oxidoreductase family protein K23273 fdhL; fructose 5-dehydrogenase large subunit [EC:1.1.5.14] D D560_0920 membrane bound FAD containing D-sorbitol dehydrogenase family protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14] D D560_3602 glucose / Sorbosone dehydrogenase family protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D D560_2786 aldo/keto reductase family protein K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D D560_0962 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D D560_0961 pyruvate ferredoxin/flavodoxin oxidoreductase family protein K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D D560_1901 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D D560_1902 pyruvate ferredoxin/flavodoxin oxidoreductase family protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D D560_1999 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D D560_3750 zinc-binding dehydrogenase family protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D D560_2351 FAD binding domain protein K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D D560_0165 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D D560_2579 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D D560_2145 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D D560_2258 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D D560_0917 glutathione S-transferase, C-terminal domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D D560_0562 glutathione S-transferase, C-terminal domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D D560_2300 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D D560_2606 ahpC/TSA family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D D560_3433 ahpC/TSA family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D D560_2502 ahpC/TSA family protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D D560_3254 peroxiredoxin, OsmC subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D560_2978 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D560_2239 alkylhydroperoxidase AhpD family core domain protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D D560_2240 ahpC/TSA family protein K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D D560_2878 4Fe-4S binding domain protein K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D D560_3648 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D D560_1649 cysteine dioxygenase type I family protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D D560_1437 aspartyl/Asparaginyl beta-hydroxylase family protein K22616 olsC; ornithine lipid ester-linked acyl 2-hydroxylase [EC:1.14.11.58] D D560_2403 2OG-Fe(II) oxygenase superfamily protein K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D D560_2798 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D D560_3389 pyridine nucleotide-disulfide oxidoreductase family protein K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252] D D560_0950 FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein K24116 scmK; N-acetyl-S-(2-succino)cysteine monooxygenase [EC:1.14.-.-] D D560_2907 pyridine nucleotide-disulfide oxidoreductase family protein K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1] D D560_2282 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D D560_3643 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D D560_3435 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D D560_3704 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D D560_1889 methyltransferase domain protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D D560_0764 methyltransferase domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D D560_1092 tam; trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D D560_3009 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D D560_3314 acetyltransferase family protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D D560_0967 putative antibiotic resistance K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D D560_0272 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D D560_0274 putative arginine-tRNA-transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D D560_2670 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D D560_2143 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D D560_2901 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D D560_3483 kinase/pyrophosphorylase family protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D D560_1228 pap; AMP phosphotransferase K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33] D D560_0741 glnD PII-uridylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D D560_2650 diguanylate cyclase domain protein K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65] D D560_3551 putative diguanylate cyclase YeaP K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65] D D560_3212 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D D560_1824 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D D560_0415 alpha/beta hydrolase fold family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D D560_2127 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D560_2352 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D560_3881 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D D560_3569 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D D560_1507 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D D560_0420 type I phosphodiesterase / nucleotide pyrophosphatase family protein K01133 betC; choline-sulfatase [EC:3.1.6.6] D D560_1642 type I phosphodiesterase / nucleotide pyrophosphatase family protein K01133 betC; choline-sulfatase [EC:3.1.6.6] D D560_3916 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D D560_3457 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D D560_1661 glycosyl Hydrolase Family 88 family protein K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] D D560_1041 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D D560_1185 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D D560_3311 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D D560_1706 polysaccharide deacetylase family protein K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D D560_0395 CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D D560_2304 maf-like family protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D D560_3622 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D D560_1774 phosphomethylpyrimidine kinase family protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136] D D560_0040 serine racemase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D D560_2522 yjeF-related family protein K17759 NAXE; NAD(P)H-hydrate epimerase [EC:5.1.99.6] D D560_2518 xylose isomerase-like TIM barrel family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D D560_1665 AMP-binding enzyme family protein K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D D560_2449 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D D560_2451 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D D560_1977 mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D D560_2280 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D D560_0176 copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D D560_2876 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D D560_3937 putative ferredoxin, 2Fe-2S K04755 fdx; ferredoxin, 2Fe-2S D D560_3941 nifU; nifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins D D560_1039 putative citrate utilization protein B K13795 citB; citrate/tricarballylate utilization protein D D560_1037 FAD binding domain protein K13796 cobZ; tricarballylate dehydrogenase D D560_2498 electron transfer flavodomain protein K03521 fixA; electron transfer flavoprotein beta subunit D D560_0093 dodecin family protein K09165 K09165; dodecin D D560_0922 cytochrome c family protein K23275 fdhC; fructose 5-dehydrogenase cytochrome subunit C 99983 Lipid metabolism D D560_2558 acyl-CoA dehydrogenase, C-terminal domain protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D D560_0565 alanine racemase, N-terminal domain protein K06997 yggS; PLP dependent protein D D560_1198 alanine racemase, N-terminal domain protein K06997 yggS; PLP dependent protein D D560_0020 hypothetical protein K21700 bauB; beta-alanine degradation protein BauB C 99986 Glycan metabolism D D560_2490 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D D560_2491 TPR repeat family protein K19804 lapB; lipopolysaccharide assembly protein B C 99987 Cofactor metabolism D D560_3187 hemY family protein K02498 hemY; HemY protein D D560_1882 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D D560_1881 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D D560_2748 membrane fusogenic activity family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK C 99988 Secondary metabolism D D560_0092 NADPH-dependent FMN reductase family protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D D560_3904 hpcH/HpaI aldolase/citrate lyase family protein K23376 sbnG; staphyloferrin B biosynthesis citrate synthase C 99999 Others D D560_3431 doxX family protein K15977 K15977; putative oxidoreductase D D560_1250 doxX family protein K15977 K15977; putative oxidoreductase D D560_0269 doxX-like family protein K15977 K15977; putative oxidoreductase D D560_2023 phospholipase/Carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase D D560_2006 acetyltransferase family protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D D560_2768 putative cold shock protein A K03704 cspA; cold shock protein D D560_1385 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D D560_3972 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D D560_2724 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D D560_2744 nitrogen regulatory P-II family protein K04752 glnK; nitrogen regulatory protein P-II 2 D D560_2429 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation D D560_3426 heme ABC exporter, ATP-binding protein CcmA K13926 rbbA; ribosome-dependent ATPase D D560_2100 heme ABC exporter, ATP-binding protein CcmA K13926 rbbA; ribosome-dependent ATPase C 99975 Protein processing D D560_0525 META domain protein K03668 hslJ; heat shock protein HslJ D D560_2725 ATP-dependent Clp protease adaptor ClpS family protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D D560_3964 tig; trigger factor K03545 tig; trigger factor D D560_2301 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D D560_1716 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D D560_3473 smpB; ssrA-binding protein K03664 smpB; SsrA-binding protein D D560_2749 AAA domain family protein K07391 comM; magnesium chelatase family protein D D560_1248 proteasome A-type/B-type family protein K07395 K07395; putative proteasome-type protease D D560_0485 osmC-like family protein K07397 yhfA; putative redox protein D D560_1465 resB-like family protein K07399 resB; cytochrome c biogenesis protein D D560_2203 hypothetical protein K07401 K07401; selenoprotein W-related protein C 99976 Replication and repair D D560_2922 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D D560_2556 rmuC family protein K09760 rmuC; DNA recombination protein RmuC D D560_1817 hypothetical protein K07460 yraN; putative endonuclease D D560_1192 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D D560_0199 sigma-54 interaction domain protein K07478 ycaJ; putative ATPase D D560_3702 putative 3'-5' exonuclease related to the exonuclease domain of PolB family protein K07501 K07501; 3'-5' exonuclease D D560_3974 transposase family protein K07483 K07483; transposase D D560_3975 putative transposase K07484 K07484; transposase D D560_3976 transposase IS66 family protein K07484 K07484; transposase D D560_0045 transposase family protein K07485 K07485; transposase D D560_3960 transposase family protein K07485 K07485; transposase D D560_0483 transposase family protein K07485 K07485; transposase D D560_0608 transposase family protein K07485 K07485; transposase D D560_0685 transposase family protein K07485 K07485; transposase D D560_0763 transposase family protein K07485 K07485; transposase D D560_0882 transposase family protein K07485 K07485; transposase D D560_1139 transposase family protein K07485 K07485; transposase D D560_1166 transposase family protein K07485 K07485; transposase D D560_1239 transposase family protein K07485 K07485; transposase D D560_1353 transposase family protein K07485 K07485; transposase D D560_1592 transposase family protein K07485 K07485; transposase D D560_1598 transposase family protein K07485 K07485; transposase D D560_1682 transposase family protein K07485 K07485; transposase D D560_1686 transposase family protein K07485 K07485; transposase D D560_1959 transposase family protein K07485 K07485; transposase D D560_2091 transposase family protein K07485 K07485; transposase D D560_2186 transposase family protein K07485 K07485; transposase D D560_2327 transposase family protein K07485 K07485; transposase D D560_2339 transposase family protein K07485 K07485; transposase D D560_2347 transposase family protein K07485 K07485; transposase D D560_2445 transposase family protein K07485 K07485; transposase D D560_2471 transposase family protein K07485 K07485; transposase D D560_2516 transposase family protein K07485 K07485; transposase D D560_2532 transposase family protein K07485 K07485; transposase D D560_2576 transposase family protein K07485 K07485; transposase D D560_2695 transposase family protein K07485 K07485; transposase D D560_2746 transposase family protein K07485 K07485; transposase D D560_2795 transposase family protein K07485 K07485; transposase D D560_2803 transposase family protein K07485 K07485; transposase D D560_3029 transposase family protein K07485 K07485; transposase D D560_3131 transposase family protein K07485 K07485; transposase D D560_3177 transposase family protein K07485 K07485; transposase D D560_0168 transposase family protein K07485 K07485; transposase D D560_0281 transposase family protein K07485 K07485; transposase D D560_2061 transposase family protein K07485 K07485; transposase D D560_2134 transposase family protein K07485 K07485; transposase D D560_2137 transposase family protein K07485 K07485; transposase D D560_2747 transposase family protein K07485 K07485; transposase D D560_3224 transposase family protein K07485 K07485; transposase D D560_3307 transposase family protein K07485 K07485; transposase D D560_3355 transposase family protein K07485 K07485; transposase D D560_3464 transposase family protein K07485 K07485; transposase D D560_3620 transposase family protein K07485 K07485; transposase D D560_3642 transposase family protein K07485 K07485; transposase D D560_3884 transposase family protein K07485 K07485; transposase D D560_3358 transposase family protein K07485 K07485; transposase D D560_0621 transposase family protein K07485 K07485; transposase D D560_0700 transposase family protein K07485 K07485; transposase D D560_0770 transposase family protein K07485 K07485; transposase D D560_0053 transposase family protein K07485 K07485; transposase D D560_0238 transposase family protein K07485 K07485; transposase D D560_1097 transposase family protein K07485 K07485; transposase D D560_1868 transposase family protein K07485 K07485; transposase D D560_2583 transposase family protein K07485 K07485; transposase D D560_0276 transposase family protein K07485 K07485; transposase D D560_1646 transposase family protein K07485 K07485; transposase D D560_2238 transposase family protein K07485 K07485; transposase D D560_2619 transposase family protein K07485 K07485; transposase D D560_2633 transposase family protein K07485 K07485; transposase D D560_0323 transposase family protein K07485 K07485; transposase D D560_1340 transposase family protein K07485 K07485; transposase D D560_2318 transposase family protein K07485 K07485; transposase D D560_2707 transposase family protein K07485 K07485; transposase D D560_3605 transposase family protein K07485 K07485; transposase D D560_0408 transposase family protein K07485 K07485; transposase D D560_2097 transposase family protein K07485 K07485; transposase D D560_2377 transposase family protein K07485 K07485; transposase D D560_2393 transposase family protein K07485 K07485; transposase D D560_2406 transposase family protein K07485 K07485; transposase D D560_3659 transposase family protein K07485 K07485; transposase D D560_3683 transposase family protein K07485 K07485; transposase D D560_2469 transposase family protein K07485 K07485; transposase D D560_3745 transposase family protein K07485 K07485; transposase D D560_3302 transposase family protein K07485 K07485; transposase D D560_3767 transposase family protein K07485 K07485; transposase D D560_3777 transposase family protein K07485 K07485; transposase D D560_1593 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D D560_0010 integrase core domain protein K07497 K07497; putative transposase D D560_0278 integrase core domain protein K07497 K07497; putative transposase D D560_0605 integrase core domain protein K07497 K07497; putative transposase D D560_0715 integrase core domain protein K07497 K07497; putative transposase D D560_0791 integrase core domain protein K07497 K07497; putative transposase D D560_1016 integrase core domain protein K07497 K07497; putative transposase D D560_1065 integrase core domain protein K07497 K07497; putative transposase D D560_1100 integrase core domain protein K07497 K07497; putative transposase D D560_1604 integrase core domain protein K07497 K07497; putative transposase D D560_2624 integrase core domain protein K07497 K07497; putative transposase D D560_2643 integrase core domain protein K07497 K07497; putative transposase D D560_2652 integrase core domain protein K07497 K07497; putative transposase D D560_2686 integrase core domain protein K07497 K07497; putative transposase D D560_2720 integrase core domain protein K07497 K07497; putative transposase D D560_3201 integrase core domain protein K07497 K07497; putative transposase D D560_3582 integrase core domain protein K07497 K07497; putative transposase D D560_3699 integrase core domain protein K07497 K07497; putative transposase D D560_3958 integrase core domain protein K07497 K07497; putative transposase D D560_2784 integrase core domain protein K07497 K07497; putative transposase D D560_3153 integrase core domain protein K07497 K07497; putative transposase D D560_3280 integrase core domain protein K07497 K07497; putative transposase D D560_3599 integrase core domain protein K07497 K07497; putative transposase D D560_3970 integrase core domain protein K07497 K07497; putative transposase D D560_3291 transposase family protein K07497 K07497; putative transposase D D560_3152 integrase core domain protein K07497 K07497; putative transposase D D560_3292 integrase core domain protein K07497 K07497; putative transposase D D560_2116 integrase core domain protein K07497 K07497; putative transposase D D560_2154 integrase core domain protein K07497 K07497; putative transposase D D560_2470 integrase core domain protein K07497 K07497; putative transposase D D560_2854 integrase core domain protein K07497 K07497; putative transposase D D560_3236 integrase core domain protein K07497 K07497; putative transposase D D560_3237 integrase core domain protein K07497 K07497; putative transposase D D560_3238 HTH-like domain protein K07497 K07497; putative transposase D D560_3270 integrase core domain protein K07497 K07497; putative transposase D D560_3297 integrase core domain protein K07497 K07497; putative transposase D D560_3301 integrase core domain protein K07497 K07497; putative transposase D D560_3801 integrase core domain protein K07497 K07497; putative transposase D D560_3361 integrase core domain protein K07497 K07497; putative transposase D D560_3855 integrase core domain protein K07497 K07497; putative transposase D D560_0683 integrase core domain protein K07497 K07497; putative transposase D D560_3931 integrase core domain protein K07497 K07497; putative transposase D D560_3967 putative transposase K07497 K07497; putative transposase D D560_0631 integrase core domain protein K07497 K07497; putative transposase D D560_0632 transposase family protein K07497 K07497; putative transposase D D560_0655 integrase core domain protein K07497 K07497; putative transposase D D560_3405 integrase core domain protein K07497 K07497; putative transposase D D560_3876 integrase core domain protein K07497 K07497; putative transposase D D560_3906 integrase core domain protein K07497 K07497; putative transposase D D560_0240 integrase core domain protein K07497 K07497; putative transposase D D560_0247 integrase core domain protein K07497 K07497; putative transposase D D560_1607 integrase core domain protein K07497 K07497; putative transposase D D560_1866 integrase core domain protein K07497 K07497; putative transposase D D560_1884 integrase core domain protein K07497 K07497; putative transposase D D560_2194 integrase core domain protein K07497 K07497; putative transposase D D560_3476 integrase core domain protein K07497 K07497; putative transposase D D560_3978 integrase core domain protein K07497 K07497; putative transposase D D560_0248 integrase core domain protein K07497 K07497; putative transposase D D560_0299 integrase core domain protein K07497 K07497; putative transposase D D560_1645 integrase core domain protein K07497 K07497; putative transposase D D560_1658 integrase core domain protein K07497 K07497; putative transposase D D560_2245 integrase core domain protein K07497 K07497; putative transposase D D560_2612 integrase core domain protein K07497 K07497; putative transposase D D560_3067 integrase core domain protein K07497 K07497; putative transposase D D560_3548 integrase core domain protein K07497 K07497; putative transposase D D560_1346 integrase core domain protein K07497 K07497; putative transposase D D560_1356 integrase core domain protein K07497 K07497; putative transposase D D560_1479 integrase core domain protein K07497 K07497; putative transposase D D560_2270 integrase core domain protein K07497 K07497; putative transposase D D560_2277 integrase core domain protein K07497 K07497; putative transposase D D560_2295 integrase core domain protein K07497 K07497; putative transposase D D560_0372 integrase core domain protein K07497 K07497; putative transposase D D560_1754 integrase core domain protein K07497 K07497; putative transposase D D560_2320 integrase core domain protein K07497 K07497; putative transposase D D560_2706 integrase core domain protein K07497 K07497; putative transposase D D560_3148 integrase core domain protein K07497 K07497; putative transposase D D560_3151 transposase family protein K07497 K07497; putative transposase D D560_2010 integrase core domain protein K07497 K07497; putative transposase D D560_0428 integrase core domain protein K07497 K07497; putative transposase D D560_2376 integrase core domain protein K07497 K07497; putative transposase D D560_3220 integrase core domain protein K07497 K07497; putative transposase D D560_0822 integrase core domain protein K07497 K07497; putative transposase D D560_0006 integrase core domain protein K07497 K07497; putative transposase D D560_0055 integrase core domain protein K07497 K07497; putative transposase D D560_0116 integrase core domain protein K07497 K07497; putative transposase D D560_0148 integrase core domain protein K07497 K07497; putative transposase D D560_0191 integrase core domain protein K07497 K07497; putative transposase D D560_3404 integrase core domain protein K07497 K07497; putative transposase D D560_0682 integrase core domain protein K07497 K07497; putative transposase D D560_3930 integrase core domain protein K07497 K07497; putative transposase D D560_0054 integrase core domain protein K07497 K07497; putative transposase D D560_0190 integrase core domain protein K07497 K07497; putative transposase D D560_0239 integrase core domain protein K07497 K07497; putative transposase D D560_3066 integrase core domain protein K07497 K07497; putative transposase D D560_3547 integrase core domain protein K07497 K07497; putative transposase D D560_1355 integrase core domain protein K07497 K07497; putative transposase D D560_2276 integrase core domain protein K07497 K07497; putative transposase D D560_2296 integrase core domain protein K07497 K07497; putative transposase D D560_2705 integrase core domain protein K07497 K07497; putative transposase D D560_2855 integrase core domain protein K07497 K07497; putative transposase D D560_3271 integrase core domain protein K07497 K07497; putative transposase D D560_3802 integrase core domain protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D D560_3103 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D D560_1849 outer membrane porin protein K03285 TC.GBP; general bacterial porin, GBP family D D560_2216 outer membrane porin protein K03285 TC.GBP; general bacterial porin, GBP family D D560_1681 outer membrane porin protein K03285 TC.GBP; general bacterial porin, GBP family D D560_3584 aspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein D D560_2500 aspT; aspartate-alanine antiporter K07085 K07085; putative transport protein D D560_3240 hypothetical protein K23243 rcnB; nickel/cobalt homeostasis protein C 99978 Cell growth D D560_2257 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein D D560_0122 putative exported protein K27311 dcrB; inner membrane lipoprotein DcrB D D560_1856 hypothetical protein K06350 kipA; antagonist of KipI D D560_1857 allophanate hydrolase subunit 1 family protein K06351 kipI; inhibitor of KinA D D560_2049 spoVR like family protein K06415 spoVR; stage V sporulation protein R D D560_1146 peptidase M23 family protein K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D D560_1189 carbon starvation CstA family protein K06200 cstA; carbon starvation protein D D560_2938 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D D560_0893 CBS domain protein K07168 K07168; CBS domain-containing membrane protein D D560_3006 AAA domain protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D D560_2605 AAA domain protein K07175 phoH2; PhoH-like ATPase D D560_2047 prkA serine kinase C-terminal domain protein K07180 prkA; serine protein kinase D D560_2862 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D D560_0200 lolA; outer membrane lipocarrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D D560_0446 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D D560_1582 vacJ like lipofamily protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D D560_1985 glycine zipper 2TM domain protein K06077 slyB; outer membrane lipoprotein SlyB D D560_3491 outer membrane family protein K06142 hlpA; outer membrane protein D D560_3703 lysM domain protein K06194 nlpD; lipoprotein NlpD D D560_0652 capsule polysaccharide biosynthesis family protein K07265 kpsS; capsular polysaccharide export protein D D560_0653 capsule polysaccharide biosynthesis family protein K07266 kpsC; capsular polysaccharide export protein D D560_1589 ompW; outer membrane protein W K07275 ompW; outer membrane protein D D560_0402 asmA family protein K07289 asmA; AsmA protein D D560_0634 asmA family protein K07290 yhjG; AsmA family protein D D560_3425 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein D D560_2099 hlyD secretion family protein K01993 ABC-2.TX; HlyD family secretion protein D D560_3752 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein D D560_0324 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB D D560_0696 helix-turn-helix domain protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D D560_2560 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D D560_1518 putative bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D D560_1141 integral membrane, TerC family protein K05794 terC; tellurite resistance protein TerC D D560_1458 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D D560_1732 apaG; protein ApaG K06195 apaG; ApaG protein D D560_1468 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D D560_2882 PBP superfamily domain protein K07219 K07219; putative molybdopterin biosynthesis protein D D560_1700 hemin-degrading HemS.ChuX domain protein K07225 hmuS; putative hemin transport protein D D560_0083 imelysin family protein K07231 K07231; putative iron-regulated protein B B 09194 Poorly characterized C 99996 General function prediction only D D560_3509 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production D D560_2735 mce related family protein K06192 pqiB; paraquat-inducible protein B D D560_2444 BON domain protein K04065 osmY; hyperosmotically inducible periplasmic protein D D560_3664 bacterial-like globin family protein K06886 glbN; hemoglobin D D560_2546 bacterial-like globin family protein K06886 glbN; hemoglobin D D560_3036 patatin-like phospholipase family protein K07001 K07001; NTE family protein D D560_2960 patatin-like phospholipase family protein K07001 K07001; NTE family protein D D560_1810 HAD hydrolase, IA, variant 3 family protein K07025 K07025; putative hydrolase of the HAD superfamily D D560_2033 iron-sulfur cluster assembly accessory family protein K15724 erpA; iron-sulfur cluster insertion protein D D560_3264 hypothetical protein K07038 K07038; inner membrane protein D D560_3265 putative membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D D560_3209 yihY family inner membrane domain protein K07058 K07058; membrane protein D D560_0375 yihY family inner membrane domain protein K07058 K07058; membrane protein D D560_0524 rhodanese-like domain protein K07146 K07146; UPF0176 protein D D560_2344 hypothetical protein K11477 glcG; glc operon protein GlcG D D560_0296 cytochrome c oxidase caa3 assembly factor family protein K02351 K02351; putative membrane protein D D560_1548 lemA family protein K03744 lemA; LemA protein D D560_3312 slyX family protein K03745 slyX; SlyX protein D D560_1490 hypothetical protein K03747 smg; Smg protein D D560_3510 sporulation related domain protein K03749 dedD; DedD protein D D560_1007 hypothetical protein K03975 dedA; membrane-associated protein D D560_2733 paraquat-inducible A family protein K03808 pqiA; paraquat-inducible protein A D D560_1256 hypothetical protein K08972 K08972; putative membrane protein D D560_2402 hypothetical protein K08983 K08983; putative membrane protein D D560_0123 hypothetical protein K08995 K08995; putative membrane protein D D560_0785 hypothetical protein K09858 K09858; SEC-C motif domain protein C 99997 Function unknown D D560_3456 ankyrin repeat family protein K06867 K06867; uncharacterized protein D D560_0865 ankyrin repeat family protein K06867 K06867; uncharacterized protein D D560_2109 alpha/beta hydrolase fold family protein K06889 K06889; uncharacterized protein D D560_1932 hypothetical protein K06923 K06923; uncharacterized protein D D560_1259 hypothetical protein K06938 K06938; uncharacterized protein D D560_0615 putative membrane protein K06950 K06950; uncharacterized protein D D560_0784 hypothetical protein K06975 K06975; uncharacterized protein D D560_1859 hypothetical protein K06991 K06991; uncharacterized protein D D560_2068 cupin domain protein K06995 K06995; uncharacterized protein D D560_1976 alpha/beta hydrolase family protein K07000 K07000; uncharacterized protein D D560_1182 pyridoxamine 5'-phosphate oxidase, FMN-binding family protein K07006 K07006; uncharacterized protein D D560_0916 alpha/beta hydrolase family protein K07018 K07018; uncharacterized protein D D560_1288 alpha/beta hydrolase family protein K07018 K07018; uncharacterized protein D D560_0292 alpha/beta hydrolase fold family protein K07019 K07019; uncharacterized protein D D560_0105 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein D D560_0918 nitroreductase family protein K07078 K07078; uncharacterized protein D D560_1494 TRAP transporter solute receptor, TAXI family protein K07080 K07080; uncharacterized protein D D560_0641 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_2996 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_2914 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_3239 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_0802 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_2638 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D560_1015 hypothetical protein K07093 K07093; uncharacterized protein D D560_0560 calcineurin-like phosphoesterase family protein K07098 K07098; uncharacterized protein D D560_0857 calcineurin-like phosphoesterase family protein K07098 K07098; uncharacterized protein D D560_2189 phosphoribosyl transferase domain protein K07101 K07101; uncharacterized protein D D560_2665 sulfur transport family protein K07112 K07112; uncharacterized protein D D560_1222 sulfur transport family protein K07112 K07112; uncharacterized protein D D560_1223 sulfur transport family protein K07112 K07112; uncharacterized protein D D560_1352 SET domain protein K07117 K07117; uncharacterized protein D D560_0722 MOSC domain protein K07140 K07140; MOSC domain-containing protein D D560_0732 hypothetical protein K07148 K07148; uncharacterized protein D D560_3788 ATP-dependent protease La domain protein K07157 K07157; uncharacterized protein D D560_2723 hypothetical protein K09005 K09005; uncharacterized protein D D560_2797 yqey-like family protein K09117 K09117; uncharacterized protein D D560_1285 hypothetical protein K09158 K09158; uncharacterized protein D D560_1302 carbon monoxide dehydrogenase subunit G family protein K09386 K09386; uncharacterized protein D D560_0848 hypothetical protein K09705 K09705; uncharacterized protein D D560_2199 putative lipoprotein K09712 K09712; uncharacterized protein D D560_1958 hypothetical protein K09749 K09749; uncharacterized protein D D560_1680 hypothetical protein K09768 K09768; uncharacterized protein D D560_1074 YCII-related domain protein K09780 K09780; uncharacterized protein D D560_2048 hypothetical protein K09786 K09786; uncharacterized protein D D560_0342 hypothetical protein K09790 K09790; uncharacterized protein D D560_2988 hypothetical protein K09794 K09794; uncharacterized protein D D560_3471 rnfH Ubiquitin family protein K09801 K09801; uncharacterized protein D D560_2736 hypothetical protein K09857 K09857; uncharacterized protein D D560_3383 hypothetical protein K09861 K09861; uncharacterized protein D D560_2454 acetyltransferase domain protein K09919 K09919; uncharacterized protein D D560_1266 hypothetical protein K09921 K09921; uncharacterized protein D D560_1252 hypothetical protein K09930 K09930; uncharacterized protein D D560_0090 antibiotic biosynthesis monooxygenase family protein K09932 K09932; uncharacterized protein D D560_2904 pepSY-associated TM helix family protein K09939 K09939; uncharacterized protein D D560_3868 hypothetical protein K09941 K09941; uncharacterized protein D D560_0079 hypothetical protein K09947 K09947; uncharacterized protein D D560_2994 hypothetical protein K09954 K09954; uncharacterized protein D D560_0061 hypothetical protein K09958 K09958; uncharacterized protein D D560_3847 hypothetical protein K09965 K09965; uncharacterized protein D D560_0642 hutD family protein K09975 K09975; uncharacterized protein D D560_0681 hypothetical protein K09983 K09983; uncharacterized protein D D560_3147 hypothetical protein K09983 K09983; uncharacterized protein D D560_0225 VWA domain containing CoxE-like family protein K09989 K09989; uncharacterized protein D D560_1687 hypothetical protein K09990 K09990; uncharacterized protein D D560_1690 hypothetical protein K09990 K09990; uncharacterized protein D D560_0081 imelysin family protein K07338 K07338; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024