+F Repair protein KO #

  DNA Repair and Recombination Proteins - Brevibacillus laterosporus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BRLA_c007770 methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BRLA_c045170 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BRLA_c007250 yfhQ; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BRLA_c007530 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BRLA_c037720 rad25; DNA repair helicase Rad25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BRLA_c034580 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c036830 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c012290 nudE; adenosine nucleotide hydrolase NudE K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c040580 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c040720 diadenosine hexaphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c013130 NADH pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c022170 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c031330 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BRLA_c032460 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BRLA_c007770 methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRLA_c011850 methylphosphotriester-DNA--protein-cysteine S-methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BRLA_c021920 methylphosphotriester-DNA--protein-cysteine S-methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BRLA_c021930 methylated-DNA--protein-cysteine methyltransferase, inducible K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BRLA_c045170 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BRLA_c021910 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BRLA_c007250 yfhQ; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BRLA_c027760 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BRLA_c044920 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BRLA_c009250 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BRLA_c007530 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BRLA_c014990 putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E BRLA_c035360 putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BRLA_c012900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BRLA_c005100 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BRLA_c009240 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BRLA_c021970 uvrA_1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BRLA_c043380 uvrA_2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BRLA_c043390 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BRLA_c011660 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BRLA_c037540 yjcD; putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c029150 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c005090 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c027060 helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c009240 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BRLA_c005100 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BRLA_c001690 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BRLA_c001700 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BRLA_c002060 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BRLA_c044660 DNA-directed RNA polymerase K03048 rpoE; DNA-directed RNA polymerase subunit delta F BRLA_c034230 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BRLA_c000770 transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BRLA_c031770 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BRLA_c011130 mutS2; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BRLA_c031760 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BRLA_c016840 exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BRLA_c016850 exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BRLA_c009020 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BRLA_c032620 DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BRLA_c000020 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BRLA_c013670 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BRLA_c000540 DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BRLA_c000410 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BRLA_c005100 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BRLA_c037540 yjcD; putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c029150 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c005090 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c027060 helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRLA_c031440 ssb_1; helix-destabilizing protein K03111 ssb; single-strand DNA-binding protein E BRLA_c046430 ssb_2; helix-destabilizing protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BRLA_c013040 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BRLA_c032150 recA; recombinase A K03553 recA; recombination protein RecA E BRLA_c012770 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BRLA_c012780 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRLA_c012760 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BRLA_c034190 priA; replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BRLA_c042390 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BRLA_c041080 yhaO; putative metallophosphoesterase YhaO K03547 sbcD; DNA repair protein SbcD/Mre11 E BRLA_c042400 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BRLA_c032150 recA; recombinase A K03553 recA; recombination protein RecA E BRLA_c001470 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BRLA_c000040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BRLA_c033920 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRLA_c033190 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRLA_c012900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BRLA_c014240 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E BRLA_c000430 recR; recombination protein RecR K06187 recR; recombination protein RecR E BRLA_c016920 recN; recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) E BRLA_c012770 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BRLA_c012780 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRLA_c012760 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BRLA_c042370 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BRLA_c042380 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BRLA_c042390 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BRLA_c041080 yhaO; putative metallophosphoesterase YhaO K03547 sbcD; DNA repair protein SbcD/Mre11 E BRLA_c042400 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BRLA_c033570 ykoV; putative DNA repair protein YkoV K10979 ku; DNA end-binding protein Ku E BRLA_c033610 putative DNA ligase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E BRLA_c033620 ykoU; putative ATP-dependent DNA ligase YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BRLA_c000210 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BRLA_c000060 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BRLA_c033140 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BRLA_c012040 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BRLA_c018880 hup_2; bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BRLA_c012900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BRLA_c014240 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F BRLA_c000430 recR; recombination protein RecR K06187 recR; recombination protein RecR F BRLA_c005100 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BRLA_c045510 recQ_2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BRLA_c018590 recQ_1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BRLA_c021970 uvrA_1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BRLA_c043380 uvrA_2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BRLA_c043390 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BRLA_c013480 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BRLA_c032150 recA; recombinase A K03553 recA; recombination protein RecA D BRLA_c029420 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BRLA_c016920 recN; recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) D BRLA_c031440 ssb_1; helix-destabilizing protein K03111 ssb; single-strand DNA-binding protein D BRLA_c046430 ssb_2; helix-destabilizing protein K03111 ssb; single-strand DNA-binding protein D BRLA_c032140 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BRLA_c019560 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BRLA_c034580 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c036830 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c012290 nudE; adenosine nucleotide hydrolase NudE K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c040580 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c040720 diadenosine hexaphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c013130 NADH pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c022170 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRLA_c031330 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BRLA_c032460 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BRLA_c016050 nrdZ; ribonucleoside-diphosphate reductase NrdZ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BRLA_c024310 ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BRLA_c024300 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BRLA_c018100 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BRLA_c032530 nrnA_1; bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024