+F Repair protein KO
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DNA Repair and Recombination Proteins - Bacillus subtilis subsp. natto BEST195
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BSNT_07844 ogt; O6-methylguanine-DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BSNT_10457 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BSNT_10530 yxlJ; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BSNT_07248 yfhQ; hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BSNT_08628 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BSNT_09485 ytkD; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_10619 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_10105 yvcI; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_06774 mutT; mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_08339 yncF; hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BSNT_07844 ogt; O6-methylguanine-DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BSNT_06491 adaA; methylphosphotriester-DNA alkyltransferase/transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BSNT_06492 adaB; O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BSNT_10457 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BSNT_06490 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BSNT_07178 yfjP; hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BSNT_10530 yxlJ; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BSNT_07248 yfhQ; hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BSNT_09328 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BSNT_08628 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BSNT_10805 exoA; multifunctional DNA-repair enzyme K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BSNT_08954 yqfS; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E BSNT_10261 hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E BSNT_09162 yrvE; hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BSNT_07039 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BSNT_09329 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BSNT_10143 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BSNT_10144 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BSNT_09267 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BSNT_07628 yjcD; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_07038 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_09861 yvgS; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_09329 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BSNT_07039 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BSNT_06397 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BSNT_06398 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BSNT_06428 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BSNT_10373 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
F BSNT_08081 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BSNT_00094 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BSNT_08218 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E BSNT_09278 mutSB; recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E BSNT_08219 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BSNT_08864 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BSNT_08863 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BSNT_09346 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BSNT_08173 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E BSNT_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BSNT_09000 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BSNT_00063 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BSNT_06309 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BSNT_07039 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BSNT_07628 yjcD; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_07038 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_09861 yvgS; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BSNT_10806 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E BSNT_10279 ywpH; hypothetical protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BSNT_09147 yrrC; hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BSNT_08207 recA; multifunctional SOS repair regulator K03553 recA; recombination protein RecA
E BSNT_09175 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E BSNT_09174 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BSNT_08083 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BSNT_07511 yirY; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BSNT_07510 sbcD; exonuclease SbcD-like protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BSNT_08207 recA; multifunctional SOS repair regulator K03553 recA; recombination protein RecA
E BSNT_06378 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BSNT_00004 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E BSNT_08098 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BSNT_09162 yrvE; hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BSNT_08969 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BSNT_06311 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BSNT_08857 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BSNT_08625 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U
E BSNT_09175 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E BSNT_09174 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E BSNT_07509 addA; ATP-dependent deoxyribonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BSNT_07508 addB; ATP-dependent deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E BSNT_07511 yirY; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BSNT_07510 sbcD; exonuclease SbcD-like protein K03547 sbcD; DNA repair protein SbcD/Mre11
E BSNT_10727 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BSNT_07828 ykoV; hypothetical protein K10979 ku; DNA end-binding protein Ku
E BSNT_07827 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BSNT_00008 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BSNT_00006 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BSNT_08123 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BSNT_08676 hbs; non-specific DNA-binding protein HBsu K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BSNT_09162 yrvE; hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BSNT_08969 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BSNT_06311 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BSNT_07039 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BSNT_08704 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BSNT_08483 yocI; hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BSNT_10143 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BSNT_10144 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BSNT_08816 yqjH; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BSNT_08207 recA; multifunctional SOS repair regulator K03553 recA; recombination protein RecA
D BSNT_08366 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BSNT_08857 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BSNT_10806 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BSNT_10279 ywpH; hypothetical protein K03111 ssb; single-strand DNA-binding protein
D BSNT_07235 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D BSNT_09279 yshC; hypothetical protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D BSNT_08609 ypvA; hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BSNT_08634 dinG; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D BSNT_09485 ytkD; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_10619 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_10105 yvcI; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_06774 mutT; mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BSNT_08339 yncF; hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BSNT_08257 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BSNT_08258 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D BSNT_09350 ytqI; hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024