+F Repair protein KO
#
DNA Repair and Recombination Proteins - Caballeronia insecticola
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BRPE64_BCDS02590 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ACDS22600 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ECDS03040 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ACDS22100 phr; deoxyribodipyrimidine photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BRPE64_ACDS24490 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BRPE64_BCDS10510 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BRPE64_ACDS02470 mutY; A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BRPE64_ACDS09030 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E BRPE64_BCDS10030 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BRPE64_ACDS24050 mutT; 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_CCDS07850 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_CCDS08510 nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_ACDS05750 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BRPE64_BCDS02590 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ACDS22600 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ECDS03040 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BRPE64_ACDS28270 ada; transcriptional regulator AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BRPE64_ACDS22100 phr; deoxyribodipyrimidine photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BRPE64_ACDS24490 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BRPE64_DCDS08970 uracil-DNA glycosylase superfamily K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E BRPE64_ACDS11600 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BRPE64_DCDS02910 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BRPE64_BCDS03100 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BRPE64_ACDS17840 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BRPE64_DCDS03970 alkA; AlkA domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BRPE64_BCDS10510 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BRPE64_ACDS02470 mutY; A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BRPE64_ACDS01130 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BRPE64_ECDS03230 putative uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BRPE64_ACDS02460 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BRPE64_ACDS09030 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BRPE64_ACDS00500 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BRPE64_ACDS10060 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BRPE64_BCDS02340 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BRPE64_ACDS18270 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BRPE64_ACDS11820 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BRPE64_BCDS12210 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BRPE64_ACDS02660 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E BRPE64_DCDS07750 excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A
E BRPE64_BCDS10280 UvrA family protein K03701 uvrA; excinuclease ABC subunit A
E BRPE64_ACDS10330 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E BRPE64_ACDS19560 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E BRPE64_ACDS18750 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BRPE64_ACDS20140 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BRPE64_BCDS12210 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BRPE64_ACDS11820 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BRPE64_ACDS25940 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BRPE64_ACDS25930 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BRPE64_ACDS25590 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BRPE64_ACDS07550 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BRPE64_ACDS13430 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BRPE64_ACDS17980 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BRPE64_ACDS04520 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BRPE64_ACDS22420 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BRPE64_BCDS12150 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BRPE64_ACDS09240 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BRPE64_ACDS00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BRPE64_ACDS06370 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BRPE64_ACDS23190 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BRPE64_ACDS13930 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BRPE64_BCDS11360 ydjQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BRPE64_ACDS19440 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BRPE64_ACDS07620 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BRPE64_ACDS16080 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BRPE64_ACDS11820 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BRPE64_ACDS18750 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BRPE64_ACDS20140 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BRPE64_ACDS02680 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BRPE64_ACDS09590 recB; exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BRPE64_ACDS09580 recC; exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BRPE64_ACDS09600 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BRPE64_ACDS04710 recA; protein RecA K03553 recA; recombination protein RecA
E BRPE64_ACDS03430 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BRPE64_ACDS03420 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BRPE64_ACDS03440 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BRPE64_ACDS27530 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BRPE64_ACDS13070 putative primosomal replication protein N PriB K02686 priB; primosomal replication protein N
D RecFOR pathway proteins
E BRPE64_ACDS04710 recA; protein RecA K03553 recA; recombination protein RecA
E BRPE64_ACDS11670 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
E BRPE64_ACDS03740 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BRPE64_ACDS18270 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BRPE64_ACDS19640 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BRPE64_ACDS16060 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BRPE64_ACDS03960 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BRPE64_ACDS14660 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E BRPE64_ACDS03430 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BRPE64_ACDS03420 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BRPE64_ACDS03440 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BRPE64_ACDS15540 probable DNA repair protein BC1003_1568 K10979 ku; DNA end-binding protein Ku
E BRPE64_ACDS15530 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BRPE64_ACDS20730 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BRPE64_ACDS00030 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BRPE64_BCDS12430 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BRPE64_ACDS28030 DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
F BRPE64_ACDS13640 hupB; histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BRPE64_ACDS18270 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BRPE64_ACDS19640 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BRPE64_ACDS16060 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BRPE64_ACDS11820 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BRPE64_ACDS03460 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BRPE64_ACDS11260 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F BRPE64_ACDS20650 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F BRPE64_ACDS25920 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BRPE64_ACDS02660 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F BRPE64_DCDS07750 excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A
F BRPE64_BCDS10280 UvrA family protein K03701 uvrA; excinuclease ABC subunit A
F BRPE64_ACDS10330 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F BRPE64_CCDS02360 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BRPE64_BCDS07680 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BRPE64_BCDS05810 putative uncharacterized protein K03746 hns; DNA-binding protein H-NS
F BRPE64_ACDS28690 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BRPE64_DCDS03750 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BRPE64_BCDS02240 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BRPE64_ACDS04710 recA; protein RecA K03553 recA; recombination protein RecA
D BRPE64_ACDS12940 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BRPE64_ACDS03960 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BRPE64_BCDS07120 DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7]
D BRPE64_ECDS03200 polB; DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7]
D BRPE64_ACDS17180 putative uncharacterized protein K14160 imuA; protein ImuA
D BRPE64_ACDS17170 putative uncharacterized protein K14161 imuB; protein ImuB
D BRPE64_ACDS17160 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BRPE64_ACDS02680 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BRPE64_ACDS28580 dinD; DNA-damage-inducible protein K14623 dinD; DNA-damage-inducible protein D
D BRPE64_ACDS04720 regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BRPE64_ACDS27390 rep; UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BRPE64_ACDS15710 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BRPE64_ACDS05500 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BRPE64_BCDS06440 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BRPE64_ACDS24050 mutT; 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_CCDS07850 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_CCDS08510 nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BRPE64_ACDS05750 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BRPE64_BCDS09400 ribonucleoside-diphosphate reductase adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BRPE64_ACDS23810 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BRPE64_ACDS23770 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024