+E Ribosome biogenesis KO
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Ribosome Biogenesis - Crocosphaera watsonii
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CwatDRAFT_2818 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CwatDRAFT_0585 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CwatDRAFT_3013 Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era K03595 era; GTPase
C CwatDRAFT_3325 Small GTP-binding protein domain K03595 era; GTPase
C CwatDRAFT_0702 GTP-binding protein, HSR1-related:GTP1/OBG subdomain K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CwatDRAFT_2698 Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C CwatDRAFT_4742 Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C CwatDRAFT_0860 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CwatDRAFT_6561 Pseudouridine synthase, Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CwatDRAFT_2971 RRNA 16S rRNA dimethylase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CwatDRAFT_1820 Fmu, rRNA SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CwatDRAFT_3528 Conserved hypothetical protein 95 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CwatDRAFT_1242 Conserved hypothetical protein 46 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CwatDRAFT_3242 Glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CwatDRAFT_0843 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CwatDRAFT_1029 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CwatDRAFT_0290 Hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D CwatDRAFT_2518 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CwatDRAFT_5324 Putative RNA methylase:THUMP K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D CwatDRAFT_5814 Conserved hypothetical protein 48 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CwatDRAFT_0290 Hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CwatDRAFT_2710 tRNA (uracil-5-)-methyltransferase/TrmA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CwatDRAFT_2289 Pseudouridine synthase, RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CwatDRAFT_6597 Pseudouridine synthase, RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C CwatDRAFT_1879 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C CwatDRAFT_2530 S6 modification enzyme RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C CwatDRAFT_2515 RimM protein:PRC-barrel K02860 rimM; 16S rRNA processing protein RimM
C CwatDRAFT_6256 Protein of unknown function UPF0004:Conserved hypothetical protein 1125 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CwatDRAFT_6396 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C CwatDRAFT_2818 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CwatDRAFT_0585 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CwatDRAFT_4186 Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12]
C CwatDRAFT_2320 Conserved hypothetical protein 250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C CwatDRAFT_2517 Ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C CwatDRAFT_6257 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C CwatDRAFT_3013 Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era K03595 era; GTPase
C CwatDRAFT_3325 Small GTP-binding protein domain K03595 era; GTPase
C CwatDRAFT_5601 Protein of unknown function DUF258 K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CwatDRAFT_4254 Small GTP-binding protein domain:GTP-binding K03977 engA; GTPase
C CwatDRAFT_0702 GTP-binding protein, HSR1-related:GTP1/OBG subdomain K03979 obgE; GTPase [EC:3.6.5.-]
C CwatDRAFT_5504 GTP-binding K14540 rbgA; ribosome biogenesis GTPase A
C CwatDRAFT_3747 GTP-binding protein, HSR1-related K03665 hflX; GTPase
B Other maturation factors
C CwatDRAFT_1572 SUA5/yciO/yrdC, N-terminal K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CwatDRAFT_4975 RelA/SpoT protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CwatDRAFT_3787 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CwatDRAFT_2697 Protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C CwatDRAFT_3045 RNA-binding S4 K14761 rlbA; ribosome-associated protein
C CwatDRAFT_4813 Iojap-related protein K09710 ybeB; ribosome-associated protein
C CwatDRAFT_6503 Protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C CwatDRAFT_3426 Conserved hypothetical protein 92:GTP-binding K06942 ychF; ribosome-binding ATPase
C CwatDRAFT_5317 Protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024