+E Transcription factors KO
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Transcription Factors - Devosia sp. H5989
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D XM25_19825 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XM25_07940 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D XM25_03695 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D XM25_06517 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D XM25_00325 Melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D XM25_22235 Melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D XM25_12130 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D XM25_22395 ygiV; Uncharacterized protein ygiV K13652 K13652; AraC family transcriptional regulator
D XM25_09720 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D XM25_00065 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D XM25_17755 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D XM25_14175 GcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XM25_20915 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XM25_02240 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XM25_06570 YdcI; LysR family transcriptional regulator YdcI K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D XM25_04465 MetR; Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D XM25_03215 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D XM25_13530 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D XM25_21270 GcvA; Glycine cleavage system transcriptional activator GcvA K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D XM25_18635 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D XM25_20445 Glycine cleavage system transcriptional activator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D XM25_03220 CbbR; RuBisCO operon transcriptional regulator CbbR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
C DeoR family
D XM25_05170 GlpR; Glycerol-3-phosphate regulon repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D XM25_02500 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D XM25_13000 MalR; Maltose operon transcriptional repressor MalR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_13040 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_13395 Transcriptional regulator of beta-glucosides utilization, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_13525 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_20245 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_17935 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_18175 Xylose regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_17055 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_03150 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_04315 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_04355 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_06300 AglR; Transcriptional regulator AglR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_06440 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_00235 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_00495 Transcriptional regulator AglR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XM25_11590 CytR; Transcriptional (co)regulator CytR, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D XM25_07705 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D XM25_05380 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D XM25_11785 PhnF; Transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D XM25_08855 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D XM25_05400 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D XM25_13205 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D XM25_22150 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K03710 K03710; GntR family transcriptional regulator
D XM25_12815 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XM25_15830 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XM25_18538 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XM25_02085 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XM25_02155 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XM25_05273 NanR; Transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D XM25_21610 GntR family transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D XM25_01080 GntR family transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D XM25_18020 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D XM25_10250 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D XM25_21855 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
C Lrp/AsnC family
D XM25_13950 PutR; PutR, transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XM25_06445 PutR; PutR, transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XM25_11320 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XM25_03015 ArsR family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D XM25_16795 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D XM25_22435 LuxR; Transcriptional activator protein LuxR K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
C MarR family
D XM25_01890 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XM25_02970 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XM25_05365 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XM25_11920 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D XM25_03335 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D XM25_14470 SoxR; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D XM25_18110 FUR; Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D XM25_20585 ZUR; Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D XM25_18305 Irr; Iron-responsive regulator Irr K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D XM25_03540 Transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D XM25_08785 Transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D XM25_05320 Transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D XM25_02095 Transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D XM25_20415 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XM25_04565 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XM25_04445 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XM25_09680 Fnr-type transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D XM25_08570 Transcriptional regulator, CrP/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D XM25_20580 hypothetical protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D XM25_04885 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D XM25_03110 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D XM25_02010 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D XM25_02425 Transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D XM25_04350 Sialic acid utilization regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D XM25_06340 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D XM25_06925 Biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D XM25_14805 ModE; DNA-binding domain of ModE K02019 modE; molybdate transport system regulatory protein
D XM25_18470 Transcriptional regulator, Cro/CI family K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D XM25_20420 putA; Proline dehydrogenase-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D XM25_15650 BolA; Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D XM25_17610 ParB; Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XM25_18885 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XM25_15715 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D XM25_17830 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D XM25_14807 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D XM25_14815 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D XM25_17430 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D XM25_10025 Transcriptional regulator K07734 paiB; transcriptional regulator
D XM25_01455 hypothetical protein K07735 algH; putative transcriptional regulator
D XM25_10430 DnaK; molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D XM25_05600 NrdR; Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D XM25_07365 hypothetical protein K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
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Classification taken and modified from TRANSFAC 7.0