+E Transcription factors KO #

  Transcription Factors - Desulforamulus ruminis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Desru_2766 transcription activator effector binding protein K13653 K13653; AraC family transcriptional regulator D Desru_1500 helix-turn-helix-domain containing protein AraC type K13653 K13653; AraC family transcriptional regulator D Desru_3257 Ada metal-binding domain-containing protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C LysR family D Desru_2599 LysR substrate-binding protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D Desru_3141 regulatory protein DeoR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Desru_3683 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D Desru_1161 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D Desru_1460 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Desru_3825 regulatory protein LacI K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D Desru_0582 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator D Desru_0473 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator D Desru_3852 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator D Desru_1691 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Desru_1569 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Desru_1571 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Desru_2771 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Desru_3846 regulatory protein GntR HTH K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D Desru_0031 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Desru_2055 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Desru_2894 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Desru_2923 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Desru_2925 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Desru_2768 regulatory protein TetR K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D Desru_0430 regulatory protein TetR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D Desru_3894 Transcription regulator AsnC-type-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D Desru_0775 regulatory protein MarR K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D Desru_0505 regulatory protein MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Desru_2832 regulatory protein MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D Desru_1784 regulatory protein MerR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D Desru_1992 regulatory protein MerR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR C Fur family D Desru_1539 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Desru_3361 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Desru_2722 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Desru_0380 ferric-uptake regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D Desru_2418 Transcriptional regulator IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D Desru_1664 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Desru_3319 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Desru_1048 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Desru_0814 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Desru_0858 cyclic nucleotide-binding protein K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator C Rrf2 family D Desru_0611 transcriptional regulator, Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Desru_3172 transcriptional regulator, Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D Desru_2110 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Desru_2159 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family D Desru_0401 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D Desru_0579 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator D Desru_0806 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator D Desru_1446 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator C Other families D Desru_0891 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Desru_0142 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Desru_2639 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Desru_2917 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Desru_0246 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Desru_2135 helix-turn-helix domain protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D Desru_2886 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D Desru_3509 PAS sensor protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Desru_0484 sigma-54 factor interaction domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Desru_0754 regulatory protein LysR K02019 modE; molybdate transport system regulatory protein D Desru_1016 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D Desru_1868 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D Desru_0399 helix-turn-helix domain protein K07727 K07727; putative transcriptional regulator D Desru_2058 helix-turn-helix domain protein K07727 K07727; putative transcriptional regulator D Desru_2764 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D Desru_0735 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family C Others D Desru_2237 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Desru_2769 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Desru_0116 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Desru_0183 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D Desru_0720 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Desru_3747 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Desru_3892 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Desru_0267 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Desru_3838 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Desru_2150 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D Desru_3063 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D Desru_1134 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Desru_0260 Firmicute transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response D Desru_3359 PAS sensor protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Desru_2689 PspC domain protein K03973 pspC; phage shock protein C D Desru_2537 transcription elongation factor GreA/GreB domain-containing protein K06140 rnk; regulator of nucleoside diphosphate kinase D Desru_1350 tryptophan RNA-binding attenuator protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D Desru_2342 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Desru_3328 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Desru_3356 MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0