+E Transcription factors KO
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Transcription Factors - Desulforamulus ruminis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Desru_2766 transcription activator effector binding protein K13653 K13653; AraC family transcriptional regulator
D Desru_1500 helix-turn-helix-domain containing protein AraC type K13653 K13653; AraC family transcriptional regulator
D Desru_3257 Ada metal-binding domain-containing protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D Desru_2599 LysR substrate-binding protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D Desru_3141 regulatory protein DeoR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Desru_3683 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Desru_1161 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D Desru_1460 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Desru_3825 regulatory protein LacI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D Desru_0582 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator
D Desru_0473 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator
D Desru_3852 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator
D Desru_1691 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Desru_1569 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Desru_1571 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Desru_2771 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Desru_3846 regulatory protein GntR HTH K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D Desru_0031 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D Desru_2055 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D Desru_2894 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D Desru_2923 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D Desru_2925 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D Desru_2768 regulatory protein TetR K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D Desru_0430 regulatory protein TetR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D Desru_3894 Transcription regulator AsnC-type-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D Desru_0775 regulatory protein MarR K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Desru_0505 regulatory protein MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Desru_2832 regulatory protein MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Desru_1784 regulatory protein MerR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D Desru_1992 regulatory protein MerR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D Desru_1539 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Desru_3361 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Desru_2722 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Desru_0380 ferric-uptake regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D Desru_2418 Transcriptional regulator IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D Desru_1664 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Desru_3319 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Desru_1048 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Desru_0814 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Desru_0858 cyclic nucleotide-binding protein K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
C Rrf2 family
D Desru_0611 transcriptional regulator, Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Desru_3172 transcriptional regulator, Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D Desru_2110 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Desru_2159 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D Desru_0401 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D Desru_0579 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator
D Desru_0806 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator
D Desru_1446 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator
C Other families
D Desru_0891 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Desru_0142 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Desru_2639 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Desru_2917 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Desru_0246 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Desru_2135 helix-turn-helix domain protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D Desru_2886 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D Desru_3509 PAS sensor protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Desru_0484 sigma-54 factor interaction domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Desru_0754 regulatory protein LysR K02019 modE; molybdate transport system regulatory protein
D Desru_1016 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Desru_1868 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Desru_0399 helix-turn-helix domain protein K07727 K07727; putative transcriptional regulator
D Desru_2058 helix-turn-helix domain protein K07727 K07727; putative transcriptional regulator
D Desru_2764 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D Desru_0735 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D Desru_2237 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Desru_2769 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Desru_0116 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Desru_0183 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Desru_0720 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Desru_3747 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Desru_3892 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Desru_0267 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Desru_3838 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Desru_2150 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D Desru_3063 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D Desru_1134 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Desru_0260 Firmicute transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response
D Desru_3359 PAS sensor protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D Desru_2689 PspC domain protein K03973 pspC; phage shock protein C
D Desru_2537 transcription elongation factor GreA/GreB domain-containing protein K06140 rnk; regulator of nucleoside diphosphate kinase
D Desru_1350 tryptophan RNA-binding attenuator protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D Desru_2342 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Desru_3328 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Desru_3356 MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0