+D GENES KO #

  KEGG Orthology (KO) - Dinoroseobacter shibae

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:dsh00010] D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dshi_1682 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dshi_1621 putative 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Dshi_2274 glpX; fructose-1,6-bisphosphatase class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_1266 fbaA; ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dshi_2078 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dshi_1740 gap2; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_1742 gap1; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_2685 gap3; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_2155 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dshi_0089 ipgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dshi_0228 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dshi_2401 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Dshi_1968 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Dshi_2158 pdhA1; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Dshi_2159 pdhB2; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Dshi_1967 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_2160 pdhC1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_2673 exaA; quinoprotein ethanol dehydrogenase precursor K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1095 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_2683 mro; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_0213 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:dsh00020] D Dshi_1806 gltA2; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Dshi_1851 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Dshi_2060 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Dshi_1986 icd; monomeric isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dshi_2883 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Dshi_2884 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2882 sucD1; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dshi_2878 sucC1; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Dshi_2865 sdhA; succinate dehydrogenas flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dshi_2861 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dshi_2867 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dshi_2866 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Dshi_1426 hydro-lyase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Dshi_2334 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Dshi_2876 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dshi_2485 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Dshi_0213 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Dshi_1968 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Dshi_2158 pdhA1; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Dshi_2159 pdhB2; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Dshi_1967 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_2160 pdhC1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:dsh00030] D Dshi_1682 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dshi_1684 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Dshi_1683 putative 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Dshi_3006 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dshi_1738 tktA; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Dshi_1927 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Dshi_2738 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Dshi_0552 sugar isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Dshi_3016 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Dshi_1976 putative ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Dshi_0829 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_2931 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dshi_1769 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Dshi_1768 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Dshi_3895 gluconate 2-dehydrogenase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D Dshi_3896 conserved hypothetical protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D Dshi_3046 ttuD; Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_1266 fbaA; ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dshi_2274 glpX; fructose-1,6-bisphosphatase class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Dshi_1621 putative 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:dsh00040] D Dshi_3861 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dshi_3577 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dshi_3006 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dshi_1235 xylB1; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Dshi_1997 xylB2; xylose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Dshi_1996 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Dshi_2025 conserved hypothetical protein DUF1498 K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D Dshi_0551 xylD; D-xylulose reductase K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9] D Dshi_2442 aldH1; NADP-dependent fatty aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Dshi_0577 aldH2; aldehyde dehydrogenase K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D Dshi_0555 araB; ribulokinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D Dshi_0554 rbtD; ribitol 2-dehydrogenase K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56] D Dshi_0523 fucA; L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:dsh00051] D Dshi_2797 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Dshi_4146 manA; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_1897 algA; alginate biosynthesis protein K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_1900 algC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dshi_4139 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dshi_4142 wcaG; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dshi_0523 fucA; L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Dshi_2437 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D Dshi_1820 putative mannosyl-3-phosphoglycerate phosphatase K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70] D Dshi_1621 putative 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Dshi_2274 glpX; fructose-1,6-bisphosphatase class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Dshi_1996 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Dshi_0969 mtlK; mannitol dehydrogenase domain protein K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67] D Dshi_1896 algD; GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Dshi_1898 putative glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_1266 fbaA; ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dshi_2078 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dshi_0208 ptsL; PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:dsh00052] D Dshi_2683 mro; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Dshi_3868 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dshi_3577 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dshi_1239 lacZ; beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D Dshi_1245 melA; glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] D Dshi_0970 short-chain dehydrogenase/reductase SDR K21620 sorbD; galactitol 2-dehydrogenase [EC:1.1.1.16] D Dshi_1621 putative 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Dshi_1243 short-chain dehydrogenase/reductase SDR K22215 galD; galactose dehydrogenase [EC:1.1.1.48 1.1.1.120] D Dshi_1242 dgoK; 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D Dshi_1241 dgoA; KDPG and KHG aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D Dshi_3898 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Dshi_1649 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:dsh00053] D Dshi_3861 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2446 putative dihydrodipicolinate synthetase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43] D Dshi_2447 putative mandelate racemase/muconate lactonizing protein K25260 lxyD; L-lyxonate dehydratase [EC:4.2.1.176] D Dshi_2442 aldH1; NADP-dependent fatty aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:dsh00500] D Dshi_3898 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Dshi_1649 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Dshi_1824 putative sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7] D Dshi_3577 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dshi_1654 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dshi_1682 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dshi_2797 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:dsh00520] D Dshi_1726 nagZ; beta-hexosamidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Dshi_2797 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Dshi_1293 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dshi_2397 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Dshi_1294 glmU; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Dshi_2150 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Dshi_3435 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Dshi_3436 nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Dshi_0977 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dshi_2420 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_3577 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dshi_3861 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dshi_3868 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dshi_0208 ptsL; PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dshi_1682 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dshi_1900 algC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dshi_4146 manA; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_1897 algA; alginate biosynthesis protein K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_4139 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dshi_4142 wcaG; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dshi_1896 algD; GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] C 00620 Pyruvate metabolism [PATH:dsh00620] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1968 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Dshi_2158 pdhA1; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Dshi_2159 pdhB2; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Dshi_1967 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_2160 pdhC1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_2673 exaA; quinoprotein ethanol dehydrogenase precursor K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Dshi_0632 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_5006 hypothetical protein K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_1825 pta1; phosphate acetyl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dshi_0228 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dshi_3146 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dshi_1396 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Dshi_1395 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dshi_0131 accD; acetyl-CoA carboxylase K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1095 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Dshi_0709 atoDA; acyl CoA:acetate/3-ketoacid CoA transferase, alpha and beta subunit K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Dshi_0948 lldD2; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D Dshi_2484 lldD1; cytochrome containing L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D Dshi_5004 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D Dshi_1361 dld1; D-lactate dehydrogenase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D Dshi_0767 glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Dshi_2070 hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Dshi_2691 putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Dshi_0590 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Dshi_3467 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Dshi_0826 malic protein NAD-binding K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Dshi_2485 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Dshi_2876 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dshi_1426 hydro-lyase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Dshi_2334 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Dshi_0213 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Dshi_2401 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Dshi_1227 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_1696 alpha-IPM synthetase/homocitrate synthase family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dshi_0596 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:dsh00630] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1227 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Dshi_2876 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dshi_1806 gltA2; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Dshi_1851 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Dshi_2060 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Dshi_2492 sucD2; ADP-forming succinyl-CoA ligase K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9] D Dshi_2491 sucC2; succinyl-CoA synthetase K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3067 fabG1; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Dshi_2926 putative MaoC-like dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Dshi_2853 alcohol dehydrogenase K14446 ccr; crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] D Dshi_2630 putative glyoxalase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Dshi_2855 mutB; methylmalonyl-CoA mutase K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63] D Dshi_0204 mmgC; acyl-CoA dehydrogenase K14448 mcd; (2S)-methylsuccinyl-CoA dehydrogenase [EC:1.3.8.12] D Dshi_2871 putative thiol ester dehydrase/isomerase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D Dshi_3050 citE2; citrate lyase subunit beta K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Dshi_2874 putative citrate lyase subunit beta K14451 mcl2; (3S)-malyl-CoA thioesterase [EC:3.1.2.30] D Dshi_0723 pccA; carbamoyl-phosphate synthase L chain ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D Dshi_0718 pccB; carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D Dshi_0726 bhbA; methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Dshi_2896 FAD-binding oxidoreductase/transferase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Dshi_2895 hypothetical protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D Dshi_2894 hypothetical protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Dshi_2970 gyaR; glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D Dshi_0590 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Dshi_0316 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dshi_2760 putative phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dshi_2818 HAD-like hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dshi_1295 HAD-superfamily hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dshi_0887 sgaA2; serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2090 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2489 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3325 sgaA1; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_0821 glyA2; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2113 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2680 gcvP; decarboxylating glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Dshi_2682 gcvT2; aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2681 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dshi_3046 ttuD; Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dshi_0775 ttuC; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D Dshi_1768 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Dshi_1282 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dshi_0504 fdnG; formate dehydrogenase alpha chain K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dshi_1281 fdhB; respiratory-chain NADH dehydrogenase domain 51 kDa subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9] D Dshi_0505 fdnH; formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dshi_0506 fdnI; formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Dshi_2888 putative alpha/beta hydrolase K01432 AFMID; arylformamidase [EC:3.5.1.9] D Dshi_2111 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Dshi_4177 acetamidase/formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00640 Propanoate metabolism [PATH:dsh00640] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_0825 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Dshi_0709 atoDA; acyl CoA:acetate/3-ketoacid CoA transferase, alpha and beta subunit K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Dshi_0632 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_5006 hypothetical protein K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_1825 pta1; phosphate acetyl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dshi_2566 putative bifunctional enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2319 putative quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3146 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dshi_1396 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Dshi_1395 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dshi_0131 accD; acetyl-CoA carboxylase K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dshi_3000 mcd; malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D Dshi_1366 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Dshi_0723 pccA; carbamoyl-phosphate synthase L chain ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D Dshi_0718 pccB; carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D Dshi_2630 putative glyoxalase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Dshi_0726 bhbA; methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Dshi_2878 sucC1; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Dshi_2882 sucD1; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dshi_1747 mmsA; acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Dshi_2060 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] C 00650 Butanoate metabolism [PATH:dsh00650] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0214 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dshi_3826 paaF; enoyl-CoA hydratase (PaaF) and 3-hydroxyacyl-CoA dehydrogenase (PaaH) fusion protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3370 enoyl-CoA hydratase/isomerase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Dshi_0633 pta2; phosphate acetyltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D Dshi_2926 putative MaoC-like dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Dshi_0428 phaC; poly(3-hydroxyalkanoate) polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Dshi_2233 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Dshi_2234 putative polyhydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D Dshi_3067 fabG1; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Dshi_0775 ttuC; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D Dshi_1038 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Dshi_2865 sdhA; succinate dehydrogenas flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dshi_2861 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dshi_2867 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dshi_2866 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Dshi_2887 gabD; NADP(+) dependentsuccinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Dshi_1303 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Dshi_1136 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Dshi_1134 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Dshi_1544 short-chain dehydrogenase/reductase family protein K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Dshi_2283 pamO; phenylacetone monooxygenase K18371 acmA; acetone monooxygenase (methyl acetate-forming) [EC:1.14.13.226] D Dshi_2284 hypothetical protein K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114] D Dshi_1779 ilvI; acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_3840 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_1781 ilvH; acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dshi_4159 alcohol dehydrogenase GroES domain protein K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D Dshi_4158 acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] D Dshi_0620 fabG2; 3-oxoacyl-[acyl-carrier-protein] reductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:dsh00660] D Dshi_1779 ilvI; acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_3840 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_1781 ilvH; acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dshi_2878 sucC1; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Dshi_2882 sucD1; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dshi_3050 citE2; citrate lyase subunit beta K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Dshi_2871 putative thiol ester dehydrase/isomerase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D Dshi_0695 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0085 ipmi1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0696 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0083 ipmi2; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dshi_3393 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Dshi_0081 imdh; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:dsh00562] D Dshi_1199 suhB1; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dshi_0063 suhB2; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dshi_1265 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Dshi_2759 putative oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Dshi_1271 xylose isomerase domain protein TIM barrel K03335 iolE; inosose dehydratase [EC:4.2.1.44] D Dshi_1269 iolD; thiamine pyrophosphate protein central region K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D Dshi_1279 iolB2; myo-inositol catabolism IolB domain protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D Dshi_1267 iolB; conserved hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D Dshi_1268 iolC; PfkB domain protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D Dshi_1747 mmsA; acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Dshi_2078 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:dsh00190] D Dshi_1307 nuoA; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Dshi_1308 nuoB; NADH-quinone oxidoreductase K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Dshi_1309 nuoC; NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Dshi_1311 nuoD; NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Dshi_1313 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Dshi_1316 nuoF; NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Dshi_1320 nuoG; NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Dshi_1321 nuoH; quinone dependent NADH dehydrogenase K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Dshi_1322 nuoI; NADH-quinone oxidoreductase K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Dshi_1324 nuoJ; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Dshi_1326 nuoK; NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Dshi_1327 nuoL; proton-translocating NADH-quinone oxidoreductase K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Dshi_1328 nuoM; proton-translocating NADH-quinone oxidoreductase K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Dshi_1329 nuoN; proton-translocating NADH-quinone oxidoreductase K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Dshi_2865 sdhA; succinate dehydrogenas flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dshi_2861 sdhB; succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dshi_2867 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dshi_2866 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Dshi_3278 petA; ubiquinol-cytochrome c reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Dshi_3277 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Dshi_3276 petC; cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Dshi_1141 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dshi_1144 ctaE; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Dshi_2383 ctaD; cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Dshi_3891 ccoN; cytochrome c oxidase subunit I K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9] D Dshi_1140 ctaC; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Dshi_3892 ccoO; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Dshi_1143 ctaG; cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Dshi_1512 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Dshi_0661 fixN; cytochrome c oxidase K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Dshi_0662 fixO; cytochrome c oxidase K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Dshi_0663 fixQ; cytochrome c oxidase K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Dshi_0664 fixP; cytochrome c oxidase K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Dshi_2688 appC; cytochrome bd-II oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dshi_2689 cydB; cytochrome bd-I oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dshi_0654 cycM; cytochrome c552 K08738 CYC; cytochrome c D Dshi_2672 hypothetical protein K08738 CYC; cytochrome c D Dshi_3169 cycA1; cytochrome c2 K08738 CYC; cytochrome c D Dshi_2800 cytochrome c K08738 CYC; cytochrome c D Dshi_0475 cytC; cytochrome c class I K08738 CYC; cytochrome c D Dshi_3547 cycA2; cytochrome c2 K08738 CYC; cytochrome c D Dshi_0508 cytochrome c class I K08738 CYC; cytochrome c D Dshi_2936 atpA1; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dshi_0442 atpA2; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dshi_0435 atpD1; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dshi_2934 atpD2; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dshi_0443 atpG1; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dshi_2935 atpG2; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dshi_2937 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dshi_0436 atpC2; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dshi_2933 atpC1; ATP synhtase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dshi_0439 atpB2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_3030 atpB1; ATP synthase F0 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_0441 atpF1; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_3027 atpF2; ATP synthase F0 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_3028 atpX; ATP synthase F0 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_0440 atpE1; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dshi_3029 atpE2; ATP synthase F0 K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dshi_2924 ppaC; pyrophosphate phospho-hydrolase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Dshi_0740 ppk1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Dshi_0751 ppk2; protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Dshi_1595 putative polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:dsh00680] D Dshi_0476 gcd; quinoprotein glucose dehydrogenase K23995 xoxF; lanthanide-dependent methanol dehydrogenase [EC:1.1.2.10] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0474 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Dshi_1282 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dshi_0504 fdnG; formate dehydrogenase alpha chain K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dshi_1281 fdhB; respiratory-chain NADH dehydrogenase domain 51 kDa subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9] D Dshi_0505 fdnH; formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dshi_0506 fdnI; formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Dshi_0821 glyA2; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2113 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_0887 sgaA2; serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2090 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2489 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3325 sgaA1; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3046 ttuD; Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dshi_2876 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dshi_2492 sucD2; ADP-forming succinyl-CoA ligase K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9] D Dshi_2491 sucC2; succinyl-CoA synthetase K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9] D Dshi_3050 citE2; citrate lyase subunit beta K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_1266 fbaA; ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dshi_2274 glpX; fructose-1,6-bisphosphatase class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Dshi_1621 putative 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Dshi_0552 sugar isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Dshi_2278 dmsA1; dimethyl sulfoxide reductase precursor K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Dshi_1870 putative glutamine amidotransferase K22081 mgsA; methylamine---glutamate N-methyltransferase subunit A [EC:2.1.1.21] D Dshi_1869 putative glutamate synthase K22082 mgsB; methylamine---glutamate N-methyltransferase subunit B [EC:2.1.1.21] D Dshi_1868 putative glutamate synthase large subunit-like protein K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D Dshi_2266 putative sarcosine oxidase, beta subunit K22084 mgdA; methylglutamate dehydrogenase subunit A [EC:1.5.99.5] D Dshi_2265 putative sarcosine oxidase K22085 mgdB; methylglutamate dehydrogenase subunit B [EC:1.5.99.5] D Dshi_2264 putative sarcosine oxidase K22086 mgdC; methylglutamate dehydrogenase subunit C [EC:1.5.99.5] D Dshi_2263 putative sarcosine oxidase K22087 mgdD; methylglutamate dehydrogenase subunit D [EC:1.5.99.5] D Dshi_3268 putative coenzyme F420 hydrogenase K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D Dshi_4135 coenzyme F420 hydrogenase/dehydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D Dshi_0632 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_5006 hypothetical protein K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_1825 pta1; phosphate acetyl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_0089 ipgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dshi_3318 serA1; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dshi_3317 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Dshi_3316 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Dshi_1586 mttb; trimethylamine methyltransferase K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250] D Dshi_2817 trimethylamine methyltransferase K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250] C 00910 Nitrogen metabolism [PATH:dsh00910] D Dshi_4177 acetamidase/formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D Dshi_1663 periplasmic binding protein-like II K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Dshi_1664 putative ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D Dshi_1665 ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Dshi_3165 napA; periplasmic nitrate reductase NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Dshi_3162 napB; cytochrome c-type protein NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Dshi_1669 nasA; nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D Dshi_1667 nasD; nitrite reductase [NAD(P)H], large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D Dshi_1668 nasE; assimilatory nitrite reductase [NAD(P)H], small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D Dshi_3180 nirS; nitrite reductase precursor K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1] D Dshi_3184 norB; nitric oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Dshi_3183 norC; nitric-oxide reductase subunit C K02305 norC; nitric oxide reductase subunit C D Dshi_3194 nosZ; nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D Dshi_3841 gdhA; NADP(+) dependent glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_0002 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dshi_0001 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dshi_0434 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Dshi_3236 cynT; carbonate anhydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:dsh00920] D Dshi_2656 putative bifunctional SAT/APS kinase: sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dshi_3574 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Dshi_1152 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Dshi_1238 dmsA2; molybdopterin oxidoreductase Fe4S4 region K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6] D Dshi_1237 dmsB; 4Fe-4S ferredoxin iron-sulfur binding domain protein K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB D Dshi_1236 dmsC; DMSO reductase anchor subunit K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC D Dshi_2804 soxA1; diheme cytochrome c K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Dshi_2807 cytochrome c K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Dshi_0470 soxZ; sulphur oxidation protein SoxZ K17226 soxY; sulfur-oxidizing protein SoxY D Dshi_2806 putative sulfur oxidation protein K17226 soxY; sulfur-oxidizing protein SoxY D Dshi_4155 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY D Dshi_0481 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY D Dshi_2805 putative sulphur oxidation protein K17227 soxZ; sulfur-oxidizing protein SoxZ D Dshi_2803 putative 5'-nucleotidase K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20] D Dshi_3212 oxidoreductase molybdopterin binding K17225 soxC; sulfane dehydrogenase subunit SoxC D Dshi_2802 oxidoreductase K17225 soxC; sulfane dehydrogenase subunit SoxC D Dshi_3211 putative sulfite oxidase cytochrome subunit K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D Dshi_2801 cytochrome c K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D Dshi_1153 cysI; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Dshi_2526 putative sulfide quinone-rductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D Dshi_2799 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D Dshi_0146 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Dshi_2161 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dshi_2314 putative cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_0891 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_2951 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_1593 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Dshi_1002 metB1; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Dshi_2410 trans-sulfuration enzyme family protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Dshi_0757 selenium-binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] D Dshi_3313 conserved hypothetical protein K16953 dddL; dimethylpropiothetin dethiomethylase [EC:4.4.1.3] D Dshi_2320 gcvT1; aminomethyltransferase K17486 dmdA; dimethylsulfoniopropionate demethylase [EC:2.1.1.269] D Dshi_0833 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Dshi_0839 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Dshi_3085 putative acyl-CoA dehydrogenase family protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Dshi_3401 hypothetical protein K21310 mddA; methanethiol S-methyltransferase [EC:2.1.1.334] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:dsh00061] D Dshi_3146 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dshi_1396 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Dshi_1395 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dshi_0131 accD; acetyl-CoA carboxylase K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dshi_1617 acyl carrier protein K02078 acpP; acyl carrier protein D Dshi_2181 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D Dshi_1961 hypothetical protein K02078 acpP; acyl carrier protein D Dshi_2183 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dshi_1720 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dshi_1009 fabB; beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Dshi_2180 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dshi_2891 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1339 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_2182 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1429 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1049 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_3903 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1010 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Dshi_1501 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dshi_1790 fabI2; NADH dependent enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1008 fabI1; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1000 fadD4; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0373 fadD3; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:dsh00071] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3826 paaF; enoyl-CoA hydratase (PaaF) and 3-hydroxyacyl-CoA dehydrogenase (PaaH) fusion protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dshi_1004 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Dshi_1058 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Dshi_0838 acyl-CoA dehydrogenase domain protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D Dshi_2357 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Dshi_1000 fadD4; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0373 fadD3; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0027 alkB1; alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Dshi_0114 pyridine nucleotide-disulphide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:dsh00121] D Dshi_0672 short-chain dehydrogenase/reductase SDR K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:dsh00561] D Dshi_3046 ttuD; Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_0527 dahK; PTS-dependent dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D Dshi_0526 dahL; PTS-dependent dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D Dshi_3420 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dshi_2854 putative glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Dshi_1719 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dshi_3095 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dshi_3054 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dshi_2914 putative alpha/beta hydrolase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D Dshi_1245 melA; glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:dsh00564] D Dshi_3830 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Dshi_3414 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Dshi_0630 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Dshi_2854 putative glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Dshi_3095 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dshi_3054 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dshi_0780 alpha/beta hydrolase fold protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D Dshi_4209 ugpQ; glycerophosphoryl diester phosphodiesterase, cytosolic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Dshi_3549 glpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Dshi_2712 putative phosphatidylethanolamine N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D Dshi_0185 cdsA2; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Dshi_1496 cdsA1; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Dshi_2713 putative CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dshi_2714 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Dshi_1578 putative phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Dshi_0421 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D Dshi_3210 ymdC; putative phospholipase D protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D Dshi_3105 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:dsh00600] D Dshi_1245 melA; glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:dsh01040] D Dshi_2677 lipolytic protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Dshi_0603 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Dshi_2218 putative Acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:dsh00230] D Dshi_2315 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Dshi_0829 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_2931 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dshi_2132 purF; amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dshi_2728 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Dshi_1888 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dshi_1713 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D Dshi_1077 purS; phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D Dshi_1079 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dshi_1889 purM; phosphoribosylformylglycinamidine cyclo ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Dshi_0680 purK; phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Dshi_0681 purE; phosphoribosylaminoimidazole carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Dshi_1076 purC; phosphoribosylaminoimidazole-succinocarboxamidesynthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Dshi_1842 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dshi_0358 purH; bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dshi_2074 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dshi_0849 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Dshi_2136 surE; 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dshi_2858 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Dshi_2651 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dshi_1581 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Dshi_1646 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dshi_1350 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dshi_3462 ham1; nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Dshi_1793 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Dshi_2958 xghB; putative xanthine dehydrogenase K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D Dshi_2959 xdhA; xanthine dehydrogenase molybdenum-binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D Dshi_1289 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dshi_1587 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dshi_2771 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Dshi_1529 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Dshi_1785 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dshi_2949 putative Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dshi_1729 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Dshi_3429 metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Dshi_0194 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dshi_0739 ppx; Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Dshi_1673 phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Dshi_2742 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dshi_0830 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D Dshi_3289 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D Dshi_0998 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Dshi_2189 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Dshi_2768 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dshi_0306 adk2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_3554 adk1; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_1160 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dshi_2656 putative bifunctional SAT/APS kinase: sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dshi_2684 putative transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Dshi_3205 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Dshi_0955 hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D Dshi_3204 polysaccharide deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5] D Dshi_3200 protein of unknown function DUF861 cupin_3 K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D Dshi_3203 allA; ureidoglycolatehydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D Dshi_2365 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Dshi_2368 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D Dshi_2369 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Dshi_0434 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:dsh00240] D Dshi_2639 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dshi_2387 carA; carbamoyl-phosphate synthase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dshi_3091 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dshi_2371 pyrC2; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Dshi_3094 pyrC1; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Dshi_0847 pyrD2; dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Dshi_2372 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Dshi_0615 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Dshi_1493 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Dshi_1350 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dshi_1160 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dshi_0983 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Dshi_3451 maf; septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Dshi_2744 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Dshi_1023 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Dshi_0849 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Dshi_2136 surE; 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dshi_0831 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Dshi_2189 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Dshi_2768 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dshi_2110 indigoidine synthase A-like protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D Dshi_0827 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Dshi_1381 amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Dshi_1943 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Dshi_1723 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Dshi_1785 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dshi_2949 putative Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dshi_3429 metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Dshi_0922 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Dshi_2975 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dshi_0828 deoA; pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Dshi_2641 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Dshi_0768 thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dshi_1362 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D Dshi_1363 pyrD1; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D Dshi_1370 dht; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dshi_1367 amaB; amidase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Dshi_0690 entB; isochorismatase K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:dsh00250] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_2199 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D Dshi_0887 sgaA2; serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2090 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2489 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3325 sgaA1; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_0244 adh; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dshi_3472 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dshi_3062 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dshi_2742 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dshi_1842 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dshi_3091 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dshi_2887 gabD; NADP(+) dependentsuccinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Dshi_0002 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dshi_0001 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dshi_3841 gdhA; NADP(+) dependent glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Dshi_2311 putA; bifunctional protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2639 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dshi_2387 carA; carbamoyl-phosphate synthase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dshi_1079 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dshi_1293 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dshi_2132 purF; amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:dsh00260] D Dshi_2061 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dshi_3240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dshi_2273 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dshi_1146 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dshi_2144 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Dshi_0821 glyA2; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2113 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_0887 sgaA2; serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2090 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2489 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3325 sgaA1; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_0590 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Dshi_3046 ttuD; Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dshi_0089 ipgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dshi_3318 serA1; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dshi_3317 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Dshi_3316 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Dshi_1182 hemA2; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3190 hemA3; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3546 hemA1; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_2680 gcvP; decarboxylating glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Dshi_2682 gcvT2; aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2681 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dshi_2126 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Dshi_2713 putative CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dshi_3717 aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D Dshi_1485 FAD dependent oxidoreductase K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4] D Dshi_2967 bifunctional enzyme involved in glycine degradation K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4] D Dshi_2115 soxA2; sarcosine oxidase subunit alpha K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D Dshi_2117 soxB; sarcosine oxidase subunit beta K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D Dshi_2114 putative sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D Dshi_2116 putative sarcosine oxidase K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D Dshi_5008 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dshi_0888 pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_2702 putative threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_3473 ilvA; threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_0952 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dshi_1031 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:dsh00270] D Dshi_2161 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dshi_2314 putative cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_0891 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_2951 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dshi_0178 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dshi_1073 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1074 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1677 putative dehypteroate synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_2235 putative methionine synthase vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dshi_1012 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Dshi_0312 luxI; N-acyl-L-homoserine lactone synthetase-like protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_2851 autoinducer synthetase K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_4152 autoinducer synthesis protein K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_0520 mtnK; 5-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] D Dshi_2068 phosphorylase family 2 K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D Dshi_2651 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dshi_0521 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Dshi_3426 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dshi_2061 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dshi_3240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dshi_2273 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dshi_1593 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Dshi_1002 metB1; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Dshi_0793 metB2; O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Dshi_2410 trans-sulfuration enzyme family protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Dshi_2837 aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3301 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_4206 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3097 gsh; glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Dshi_2829 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_0146 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Dshi_1001 serA2; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K16843 slcC; (S)-sulfolactate dehydrogenase [EC:1.1.1.310] D Dshi_2876 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dshi_2039 malate/L-lactate dehydrogenase family protein K16844 comC; (2R)-3-sulfolactate dehydrogenase (NADP+) [EC:1.1.1.338] D Dshi_2037 conserved hypothetical protein K16845 suyA; (2R)-sulfolactate sulfo-lyase subunit alpha [EC:4.4.1.24] D Dshi_2038 putative altronate hydrolase K16846 suyB; (2R)-sulfolactate sulfo-lyase subunit beta [EC:4.4.1.24] D Dshi_1439 pyridoxal phosphate-dependent enzyme K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25] D Dshi_5008 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dshi_3318 serA1; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dshi_3317 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:dsh00280] D Dshi_2837 aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3301 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_4206 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_2566 putative bifunctional enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1004 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Dshi_1058 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Dshi_1297 ivd; acyl-CoA dehydrogenase domain protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_0723 pccA; carbamoyl-phosphate synthase L chain ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D Dshi_0718 pccB; carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D Dshi_2630 putative glyoxalase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Dshi_0726 bhbA; methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Dshi_3047 glxR; 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Dshi_1752 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Dshi_1747 mmsA; acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2999 fadD1; long-chain-fatty-acid--CoA ligase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D Dshi_1366 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Dshi_1301 mccA; carbamoyl-phosphate synthase L chain ATP-binding K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Dshi_1300 mccB; propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Dshi_1304 mvaA; enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Dshi_1303 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Dshi_1136 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Dshi_1134 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:dsh00290] D Dshi_0888 pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_2702 putative threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_3473 ilvA; threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dshi_0695 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0085 ipmi1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0696 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dshi_0083 ipmi2; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dshi_3393 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Dshi_0081 imdh; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Dshi_1779 ilvI; acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_3840 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_1781 ilvH; acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dshi_2396 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dshi_0129 ilvD1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dshi_2837 aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3301 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_4206 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_1696 alpha-IPM synthetase/homocitrate synthase family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dshi_0596 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:dsh00300] D Dshi_2273 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dshi_2061 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dshi_3240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dshi_0149 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dshi_3040 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Dshi_0006 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Dshi_0798 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dshi_3020 dapE2; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dshi_0012 dapE1; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dshi_3228 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dshi_3059 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dshi_2471 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dshi_2470 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:dsh00310] D Dshi_2884 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2357 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_2887 gabD; NADP(+) dependentsuccinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Dshi_3269 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D Dshi_0339 protein of unknown function DUF849 K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D Dshi_3475 protein of unknown function DUF849 K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D Dshi_3150 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:dsh00220] D Dshi_0433 arcB; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Dshi_0796 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Dshi_3472 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dshi_3062 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dshi_2309 arginase K01476 rocF; arginase [EC:3.5.3.1] D Dshi_2365 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Dshi_2368 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D Dshi_2369 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Dshi_0432 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Dshi_1079 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_3841 gdhA; NADP(+) dependent glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Dshi_0434 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_3565 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Dshi_0324 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Dshi_1759 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Dshi_0798 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:dsh00330] D Dshi_1376 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Dshi_2124 hypothetical protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Dshi_1381 amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Dshi_1943 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Dshi_0691 hyuA; hydantoin utilization protein A K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Dshi_0692 hyuB; hydantoin utilization protein B K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Dshi_2126 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Dshi_1735 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Dshi_1375 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2227 putative FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Dshi_2309 arginase K01476 rocF; arginase [EC:3.5.3.1] D Dshi_2645 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Dshi_2311 putA; bifunctional protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dshi_2310 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12] D Dshi_1467 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dshi_1469 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Dshi_3551 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_3150 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:dsh00340] D Dshi_2953 putative ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Dshi_2954 hypothetical protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Dshi_2575 hisE; phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Dshi_1515 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Dshi_2578 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Dshi_0795 hisH; imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Dshi_2576 hisF; imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Dshi_0794 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_0979 hisD1; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:dsh00350] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Dshi_3812 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Dshi_3811 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_1647 hpcH; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Dshi_3145 garL; 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Dshi_2887 gabD; NADP(+) dependentsuccinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Dshi_2538 conserved hypothetical protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:dsh00360] D Dshi_3824 paaK; paaK phenylacetate-CoA ligase PaaK K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Dshi_3825 paaI; phenylacetic acid degradation protein PaaI K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D Dshi_3818 paaA; phenylacetate-CoA oxygenase K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D Dshi_3819 paaB; phenylacetate-CoA oxygenase K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D Dshi_3820 paaC; phenylacetate-CoA oxygenase K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D Dshi_3821 paaD; phenylacetate-CoA oxygenase K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D Dshi_3822 paaE; phenylacetate-CoA oxygenase/reductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D Dshi_1753 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D Dshi_3827 paaZ; phenylacetic acid degradation protein PaaZ K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91] D Dshi_0214 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Dshi_0558 dadA; D-amino-acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Dshi_3150 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Dshi_3801 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Dshi_0114 pyridine nucleotide-disulphide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Dshi_3815 monooxygenase FAD-binding K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D Dshi_1039 monooxygenase FAD-binding K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D Dshi_0880 hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00380 Tryptophan metabolism [PATH:dsh00380] D Dshi_2888 putative alpha/beta hydrolase K01432 AFMID; arylformamidase [EC:3.5.1.9] D Dshi_1230 kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D Dshi_2884 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2357 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1849 nthA; nitrile hydratse subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D Dshi_1847 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_1848 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_3801 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dsh00400] D Dshi_1526 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Dshi_1608 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Dshi_1551 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Dshi_3450 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Dshi_2294 PQQ dehydrogenase family protein K05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8] D Dshi_1609 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Dshi_1022 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Dshi_3275 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Dshi_1796 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dshi_1798 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dshi_1799 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Dshi_1029 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Dshi_1800 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Dshi_0952 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dshi_1031 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dshi_0349 pheA1; chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D Dshi_2945 tyrC; arogenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D Dshi_0653 pheA2; bifunctional chorismate mutase/prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:dsh00410] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2952 panC; pantothenate synthase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dshi_1362 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D Dshi_1363 pyrD1; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D Dshi_1370 dht; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dshi_1367 amaB; amidase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Dshi_1366 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3000 mcd; malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D Dshi_1747 mmsA; acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:dsh00430] D Dshi_0071 ggt1; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0675 ggt2; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_4194 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_2042 tpa; taurin--pyruvate aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D Dshi_0244 adh; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dshi_1830 conserved hypothetical protein K07255 tauX; taurine dehydrogenase small subunit [EC:1.4.2.-] D Dshi_1829 putative FAD-dependent oxidoreductase K07256 tauY; taurine dehydrogenase large subunit [EC:1.4.2.-] D Dshi_0805 thiamine pyrophosphate protein central region K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Dshi_1828 xcs; sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Dshi_2045 xsc; sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Dshi_1825 pta1; phosphate acetyl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dshi_0632 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dshi_5006 hypothetical protein K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:dsh00440] D Dshi_2917 hypothetical protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D Dshi_0919 beta-lactamase domain protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:dsh00450] D Dshi_1002 metB1; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Dshi_0178 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dshi_1073 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1074 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1677 putative dehypteroate synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_2235 putative methionine synthase vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dshi_1623 sufS; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Dshi_1280 aminotransferase class V K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Dshi_1935 putative thioredoxin reductase trxB with an additional cyclic nucleotide-monophosphate binding domain K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dshi_2654 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dshi_2656 putative bifunctional SAT/APS kinase: sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dshi_3350 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dshi_2707 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:dsh00460] D Dshi_1654 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Dshi_0071 ggt1; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0675 ggt2; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_4194 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0821 glyA2; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2113 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_4177 acetamidase/formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:dsh00470] D Dshi_2378 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dshi_3150 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Dshi_2419 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dshi_1079 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dshi_1760 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dshi_2451 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dshi_2199 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D Dshi_3228 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dshi_3059 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dshi_2298 putative amino acid racemase K21898 orr; ornithine racemase [EC:5.1.1.12] D Dshi_2442 aldH1; NADP-dependent fatty aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Dshi_0558 dadA; D-amino-acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:dsh00480] D Dshi_0071 ggt1; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0675 ggt2; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_4194 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_2942 putative cation transport protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D Dshi_2026 UPF0271 (lamB) family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Dshi_2027 putative allophanate hydrolase subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D Dshi_1749 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D Dshi_3097 gsh; glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Dshi_2829 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Dshi_1191 pepA1; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dshi_3234 pepA2; leucine aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dshi_1223 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Dshi_0837 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_3308 gst1; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_1302 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_0054 gst2; glutathione S-transferase like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_2984 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_3279 putative glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_2737 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Dshi_1986 icd; monomeric isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dshi_1684 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Dshi_2055 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Dshi_0113 ahpC; redoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D Dshi_1375 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:dsh00511] D Dshi_3007 ybgG; alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] C 00540 Lipopolysaccharide biosynthesis [PATH:dsh00540] D Dshi_1502 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Dshi_2415 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Dshi_1618 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Dshi_1503 conserved hypothetical protein DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Dshi_1504 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Dshi_0031 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Dshi_3588 yrbH; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Dshi_0583 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Dshi_3575 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dshi_0032 kdtA; three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Dshi_0079 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:dsh00541] D Dshi_3577 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dshi_3868 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dshi_3861 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dshi_4118 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dshi_4115 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dshi_4114 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dshi_4117 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Dshi_4146 manA; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_1897 algA; alginate biosynthesis protein K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dshi_1900 algC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dshi_4139 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dshi_4142 wcaG; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dshi_1294 glmU; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:dsh00550] D Dshi_0977 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dshi_2420 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dshi_2422 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dshi_2451 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dshi_2471 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dshi_2419 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dshi_2470 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dshi_1495 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dshi_3593 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dshi_2469 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dshi_2423 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dshi_3309 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dshi_1171 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dshi_0592 ftsI1; division-specific transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dshi_2472 ftsI2; peptidoglycan synthetase ftsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Dshi_0923 dacC1; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dshi_2208 putative D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:dsh00552] D Dshi_3593 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:dsh00543] D Dshi_1898 putative glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Dshi_1902 putative poly(beta-D-mannuronate) O-acetylase K19294 algI; alginate O-acetyltransferase complex protein AlgI D Dshi_1903 putative alginate biosynthesis protein algJ K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D Dshi_1901 hypothetical protein K19296 algF; alginate O-acetyltransferase complex protein AlgF D Dshi_1904 hypothetical protein K19293 algX; alginate biosynthesis protein AlgX D Dshi_2161 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dshi_4133 oligosaccharide biosynthesis protein Alg14 like protein K25903 pssD; exopolysaccharide biosynthesis glucuronosyltransferase PssD D Dshi_4134 glycosyltransferase 28 domain K25904 pssE; exopolysaccharide biosynthesis glucuronosyltransferase PssE B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:dsh00730] D Dshi_3681 thiC; thiamine biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Dshi_4080 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Dshi_3877 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Dshi_0915 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Dshi_1632 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dshi_0914 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D Dshi_3294 dxs1; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dshi_3526 dxs2; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dshi_0912 thiG; thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Dshi_0911 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dshi_1514 putative thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dshi_2739 putative thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Dshi_0306 adk2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_3554 adk1; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_0908 transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:dsh00740] D Dshi_0039 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Dshi_2251 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dshi_2256 ribD; riboflavin biosynthesis protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dshi_2250 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Dshi_2252 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Dshi_2927 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Dshi_0347 bluB; cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D Dshi_2315 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Dshi_3714 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:dsh00750] D Dshi_1789 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Dshi_3317 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Dshi_1186 pdxA1; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Dshi_2444 pdxA2; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Dshi_0196 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Dshi_1146 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:dsh00760] D Dshi_0239 nadX; aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D Dshi_3345 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Dshi_2858 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Dshi_0849 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Dshi_2136 surE; 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dshi_2203 conserved hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Dshi_1160 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dshi_0651 NUDIX hydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D Dshi_0601 nadE; glutamine-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Dshi_1579 CinA-like protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Dshi_3347 pncA; nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D Dshi_2612 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Dshi_0822 ppnK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Dshi_1233 pntA; NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Dshi_1234 pntB; NAD(P)(+) transhydrogenase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Dshi_1038 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Dshi_2887 gabD; NADP(+) dependentsuccinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:dsh00770] D Dshi_1779 ilvI; acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_3840 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dshi_1781 ilvH; acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dshi_2396 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dshi_0129 ilvD1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dshi_2966 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Dshi_1216 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Dshi_2952 panC; pantothenate synthase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dshi_1331 putative transcriptional acitvator K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Dshi_2976 coaBC; coenzyme A biosynthesis bifunctional protein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Dshi_1160 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dshi_1744 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Dshi_3449 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Dshi_0198 acpS; holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Dshi_2837 aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3301 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_4206 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_1362 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D Dshi_1363 pyrD1; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D Dshi_1370 dht; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dshi_1367 amaB; amidase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:dsh00780] D Dshi_1009 fabB; beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Dshi_2180 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dshi_2891 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1339 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_2182 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1429 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1049 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_3903 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1501 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dshi_1790 fabI2; NADH dependent enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1008 fabI1; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1330 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:dsh00785] D Dshi_2381 lipB; lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Dshi_1583 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1968 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Dshi_2158 pdhA1; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Dshi_2159 pdhB2; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Dshi_1967 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_2160 pdhC1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Dshi_2883 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Dshi_2884 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Dshi_2566 putative bifunctional enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Dshi_2680 gcvP; decarboxylating glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Dshi_2682 gcvT2; aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dshi_2681 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:dsh00790] D Dshi_2411 conserved hypothetical protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Dshi_2399 putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Dshi_0192 hppk; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Dshi_2398 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Dshi_0132 folC; folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Dshi_0039 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Dshi_2251 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dshi_0134 pcd; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Dshi_1290 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dshi_1801 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dshi_3103 moaE; molybdopterin-converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Dshi_3089 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Dshi_1802 moeA1; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dshi_2277 moeA2; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dshi_3284 moeA3; putative molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dshi_2350 putative molybdopterin biosynthesis protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Dshi_1484 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Dshi_3283 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:dsh00670] D Dshi_1283 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Dshi_1285 folD; NADP(+) dependent methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Dshi_0821 glyA2; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_2113 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dshi_1888 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dshi_0358 purH; bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dshi_0181 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dshi_2682 gcvT2; aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dshi_1073 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1074 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1677 putative dehypteroate synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_0768 thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dshi_2111 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Dshi_1675 hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Dshi_2080 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Dshi_2769 hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:dsh00860] D Dshi_1182 hemA2; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3190 hemA3; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3546 hemA1; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_2748 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1805 gltX2; glutamyl-tRNA synthase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1563 hemB1; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dshi_2704 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Dshi_3416 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Dshi_2705 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Dshi_0674 hemF; coproporphyrinogen 3 oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Dshi_0659 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Dshi_0541 hemN1; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Dshi_3452 UPF0093 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Dshi_3498 hemH; Protoheme ferro-lyase ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Dshi_1671 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D Dshi_1155 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D Dshi_1692 cobA1; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Dshi_3179 nirE; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Dshi_3175 nirG; nitrite reductase heme biosynthesis G K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dshi_3176 nirD; nitrite reductase heme biosynthesis D protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dshi_3174 nirH; putative nitrite reductase heme biosynthesis H protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dshi_3172 nirN; nitrite reductase protein N K24867 nirN; dihydro-heme d1 dehydrogenase D Dshi_1141 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dshi_1512 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Dshi_0171 cbiX2; sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Dshi_0174 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D Dshi_0175 cbiG; precorrin-3B C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D Dshi_0176 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D Dshi_1690 cobK; precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D Dshi_1691 cbiD; cobalamin (vitamin B12) biosynthesis CbiD protein K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D Dshi_0173 cobL; decarboxylating precorrin-6Y C(5,15)-methyltransferase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D Dshi_0172 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D Dshi_1693 cobB; cobyrinic acid A,C-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Dshi_0158 cobN; cobaltochelatase K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D Dshi_2711 cobS2; aerobic cobaltochelatase subunit cobS K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D Dshi_2719 cobT1; aerobic cobaltochelatase subunit cobT K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D Dshi_0218 putative ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dshi_0157 cobA2; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dshi_2096 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Dshi_0165 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Dshi_0166 cobC; threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D Dshi_2979 putative bifunctional adenosylcobalamin biosynthesis protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Dshi_0787 cobS1; cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Dshi_0788 cobT2; nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Dshi_2980 hypothetical protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Dshi_3536 bchH; magnesium-chelatase subunit H K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1] D Dshi_3503 bchD; magnesium-chelatase 60 kDa subunit K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] D Dshi_3502 bchI; magnesium-chelatase 38 kDa subunit K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D Dshi_3538 bchM; magnesium-protoporphyrin O-methyltransferase K03428 bchM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11] D Dshi_2637 putative anaerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3] D Dshi_3544 acsF; aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase K04035 E1.14.13.81; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81] D Dshi_2636 putative bacteriochlorophyll synthase 23 kDa chain K04036 bchJ; divinyl protochlorophyllide a 8-vinyl-reductase [EC:1.-.-.-] D Dshi_4160 light-dependent protochlorophyllide reductase K00218 por; protochlorophyllide reductase [EC:1.3.1.33] D Dshi_3537 bchL; light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein K04037 chlL; light-independent protochlorophyllide reductase subunit L [EC:1.3.7.7] D Dshi_3534 bchN; light-independent protochlorophyllide reductase subunit N K04038 chlN; light-independent protochlorophyllide reductase subunit N [EC:1.3.7.7] D Dshi_3535 bchB; light-independent protochlorophyllide reductase subunit B K04039 chlB; light-independent protochlorophyllide reductase subunit B [EC:1.3.7.7] D Dshi_3530 bchG; bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133] D Dshi_3517 bchX; bacteriachlorophyllide reductase iron protein subunit X K11333 bchX; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit X [EC:1.3.7.14 1.3.7.15] D Dshi_3518 bchY; bacteriachlorophyllide reductase iron protein subunit Y K11334 bchY; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Y [EC:1.3.7.14 1.3.7.15] D Dshi_3519 bchZ; bacteriachlorophyllide reductase iron protein subunit Z K11335 bchZ; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Z [EC:1.3.7.14 1.3.7.15] D Dshi_3533 bchF; 2-vinyl bacteriochlorophyllide hydratase K11336 bchF; 3-vinyl bacteriochlorophyllide hydratase [EC:4.2.1.165] D Dshi_3516 bchC; 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase K11337 bchC; bacteriochlorophyllide a dehydrogenase [EC:1.1.1.396] D Dshi_3528 bchP; geranylgeranyl reductase K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] D Dshi_2212 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dsh00130] D Dshi_3100 ubiA; para-hydroxybenzoate--polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Dshi_3714 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dshi_3400 ubiG2; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Dshi_3550 ubiG1; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Dshi_0062 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Dshi_2392 putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Dshi_3368 ubiE; 2-polyprenylmethoxybenozoquinol methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Dshi_1378 quinone dependent NAD(P)H dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Dshi_1379 quinone dependent NADH dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:dsh00900] D Dshi_3294 dxs1; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dshi_3526 dxs2; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dshi_1497 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Dshi_1577 ispDF; bifunctional enzyme ispD/ispF K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D Dshi_3073 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Dshi_1184 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Dshi_0188 lytB; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3714 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dshi_3527 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Dshi_3295 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Dshi_3514 crtE; geranylgeranyl pyrophosphate synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dshi_3072 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dshi_1495 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dshi_3528 bchP; geranylgeranyl reductase K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:dsh00906] D Dshi_3509 crtB; phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Dshi_1695 conserved hypothetical protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Dshi_3508 crtI; phytoene dehydrogenase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] D Dshi_3512 crtC; hydroxyneurosporene dehydrogenase K09844 crtC; carotenoid 1,2-hydratase [EC:4.2.1.131] D Dshi_3513 crtD; methoxyneurosporene dehydrogenase K09845 crtD; 1-hydroxycarotenoid 3,4-desaturase [EC:1.3.99.27] D Dshi_3515 crtF; hydroxyneurosporene methyltransferase K09846 crtF; demethylspheroidene O-methyltransferase [EC:2.1.1.210] D Dshi_3501 crtA; spheroidene monooxygenase K09847 crtA; spheroidene monooxygenase [EC:1.14.15.9] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:dsh00903] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2588 putative esterase/lipase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:dsh00907] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_1303 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Dshi_1738 tktA; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics D Dshi_2002 hypothetical protein K21162 sgcE4; enediyne biosynthesis protein E4 C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:dsh00523] D Dshi_4118 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dshi_4115 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dshi_4114 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dshi_4117 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures [PATH:dsh01054] D Dshi_2199 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides D Dshi_1284 chorismate mutase related enzyme K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21] C 01055 Biosynthesis of vancomycin group antibiotics D Dshi_4115 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:dsh00946] D Dshi_1654 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Dshi_1565 acylase precursor K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:dsh00332] D Dshi_1467 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dshi_1469 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:dsh00261] D Dshi_2656 putative bifunctional SAT/APS kinase: sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dshi_2061 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dshi_3240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dshi_0149 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dshi_3040 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:dsh00521] D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dshi_2020 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dshi_1199 suhB1; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dshi_0063 suhB2; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dshi_1265 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Dshi_2759 putative oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Dshi_4118 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dshi_4115 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dshi_4114 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dshi_4117 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Dshi_1655 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:dsh00525] D Dshi_4118 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dshi_4115 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:dsh00401] D Dshi_2945 tyrC; arogenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:dsh00405] D Dshi_2745 uncharacterized isomerase K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D Dshi_1796 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dshi_1798 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Dshi_2183 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dshi_2891 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1339 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_2182 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1429 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1049 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_3903 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1790 fabI2; NADH dependent enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1008 fabI1; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Dshi_1617 acyl carrier protein K02078 acpP; acyl carrier protein D Dshi_2181 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D Dshi_1961 hypothetical protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:dsh00999] D Dshi_1012 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Dshi_3450 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Dshi_1654 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D Dshi_2298 putative amino acid racemase K21898 orr; ornithine racemase [EC:5.1.1.12] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:dsh00362] D Dshi_1007 catD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Dshi_3817 paaJ; beta-ketoadipyl CoA thiolase PaaJ K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D Dshi_0880 hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D Dshi_0961 catechol dioxygenase domain protein K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37] D Dshi_3476 pcaG; protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Dshi_3477 pcaH; protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D Dshi_3474 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D Dshi_2361 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Dshi_3478 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Dshi_1323 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Dshi_3479 pobA; P-hydroxybenzoate hydroxylase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Dshi_3826 paaF; enoyl-CoA hydratase (PaaF) and 3-hydroxyacyl-CoA dehydrogenase (PaaH) fusion protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dshi_2357 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Dshi_0214 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:dsh00627] D Dshi_1849 nthA; nitrile hydratse subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D Dshi_1847 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_1848 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_3714 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation D Dshi_1849 nthA; nitrile hydratse subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D Dshi_1847 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_1848 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] C 00625 Chloroalkane and chloroalkene degradation [PATH:dsh00625] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_3017 ald; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_3021 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_1430 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dshi_2673 exaA; quinoprotein ethanol dehydrogenase precursor K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Dshi_2992 dehH; Haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D Dshi_2700 dhlB; (S)-2-haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:dsh00361] D Dshi_0961 catechol dioxygenase domain protein K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37] D Dshi_2700 dhlB; (S)-2-haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D Dshi_2992 dehH; Haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation C 00622 Xylene degradation D Dshi_0880 hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:dsh00643] D Dshi_3812 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Dshi_3811 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Dshi_1849 nthA; nitrile hydratse subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D Dshi_1847 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_1848 hypothetical protein K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D Dshi_0709 atoDA; acyl CoA:acetate/3-ketoacid CoA transferase, alpha and beta subunit K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation D Dshi_2365 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Dshi_2368 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D Dshi_2369 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:dsh00930] D Dshi_0027 alkB1; alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Dshi_2588 putative esterase/lipase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D Dshi_0835 fadJ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D Dshi_0880 hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00626 Naphthalene degradation [PATH:dsh00626] D Dshi_0931 adhA; alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Dshi_1078 alcohol dehydrogenase zinc-binding domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dshi_0103 adhI; alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Dshi_0473 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D Dshi_3476 pcaG; protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Dshi_3477 pcaH; protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation [PATH:dsh00365] D Dshi_3716 UbiD family decarboxylase K16874 hmfF; 2,5-furandicarboxylate decarboxylase 1 D Dshi_3722 AMP-dependent synthetase and ligase K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31] D Dshi_3719 coxL; coxL&coxG: carbon monoxide dehydrogenase large chain (CoxL) fused with carbon monoxide dehydrogenase subunit G (CoxG) K16877 hmfA; 2-furoyl-CoA dehydrogenase large subunit [EC:1.3.99.8] D Dshi_3720 coxM; carbon monoxide dehydrogenase medium chain K16878 hmfB; 2-furoyl-CoA dehydrogenase FAD binding subunit [EC:1.3.99.8] D Dshi_3721 coxS; carbon monoxide dehydrogenase small chain K16879 hmfC; 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit [EC:1.3.99.8] D Dshi_3723 enoyl-CoA hydratase/isomerase K16880 hmfE; 2-oxoglutaroyl-CoA hydrolase C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:dsh03020] D Dshi_0268 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dshi_0269 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dshi_0309 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dshi_0193 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:dsh03010] D Dshi_1025 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Dshi_1548 rbsB1; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Dshi_0288 rpsC; ribosomal protein S3 RpsC K02982 RP-S3; small subunit ribosomal protein S3 D Dshi_2948 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Dshi_0302 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Dshi_2186 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Dshi_0272 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Dshi_0299 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Dshi_1601 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Dshi_0275 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Dshi_0308 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Dshi_0271 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Dshi_0307 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Dshi_0298 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Dshi_2994 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Dshi_0348 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Dshi_0294 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Dshi_2187 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Dshi_0286 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Dshi_3371 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Dshi_0246 putative ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Dshi_0261 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Dshi_0285 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Dshi_0276 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Dshi_0277 rplD; 50S ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Dshi_0297 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Dshi_0300 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Dshi_0266 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dshi_2188 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Dshi_0265 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Dshi_0260 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Dshi_1602 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Dshi_0295 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Dshi_0304 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Dshi_0289 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Dshi_0310 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Dshi_0301 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Dshi_0341 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Dshi_0231 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Dshi_1460 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Dshi_0287 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Dshi_0278 rplW; 50S Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Dshi_0296 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Dshi_0950 rplY; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Dshi_1461 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Dshi_2583 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Dshi_0293 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Dshi_0303 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Dshi_0340 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Dshi_1718 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Dshi_2781 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Dshi_0333 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Dshi_0230 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Dshi_0387 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Dshi_6006 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6013 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6009 23SrRNA K01980 23SrRNA; 23S ribosomal RNA D Dshi_6016 23SrRNA K01980 23SrRNA; 23S ribosomal RNA D Dshi_6010 5SrRNA K01985 5SrRNA; 5S ribosomal RNA D Dshi_6017 5SrRNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:dsh00970] D Dshi_6015 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6008 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6038 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dshi_6033 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dshi_6034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dshi_6040 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dshi_6012 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dshi_6041 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dshi_6044 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6018 tRNA-His K14226 tRNA-His; tRNA His D Dshi_6007 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dshi_6014 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dshi_6024 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6050 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dshi_6046 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6011 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6037 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6022 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dshi_6001 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6003 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6002 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dshi_6045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dshi_6035 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_6031 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_6005 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_2748 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1805 gltX2; glutamyl-tRNA synthase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_0061 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dshi_2785 gatA; glutamyl-tRNA(Gln) amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dshi_1207 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dshi_2786 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dshi_1642 alaS; alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dshi_2633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dshi_2404 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dshi_2402 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dshi_0777 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dshi_1863 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dshi_1698 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dshi_2707 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dshi_0181 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dshi_2087 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dshi_0057 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dshi_1933 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dshi_2206 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Dshi_1728 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dshi_0744 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dshi_2955 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dshi_0235 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dshi_0237 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dshi_2151 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dshi_2836 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:dsh03060] D Dshi_0305 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dshi_0258 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dshi_2743 putative preprotein translocase K03075 secG; preprotein translocase subunit SecG D Dshi_1065 hypothetical protein K03075 secG; preprotein translocase subunit SecG D Dshi_1859 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dshi_1858 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D Dshi_0249 efflux transporter K03074 secF; preprotein translocase subunit SecF D Dshi_1860 yajC; preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D Dshi_0328 yidC; preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dshi_3567 secA; preprotein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dshi_3447 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Dshi_0353 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dshi_2725 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D Dshi_1343 Sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dshi_1344 tatB; twin-arginine translocation protein K03117 tatB; sec-independent protein translocase protein TatB D Dshi_1345 tatC; sec-independent protein translocase K03118 tatC; sec-independent protein translocase protein TatC D Dshi_0199 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dshi_0359 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dshi_3952 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dshi_3614 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:dsh04122] D Dshi_1632 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dshi_0146 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Dshi_2339 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Dshi_1506 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dshi_3103 moaE; molybdopterin-converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Dshi_1290 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dshi_3104 moaD; molybdopterin-converting factor subunit 1 K03636 moaD; sulfur-carrier protein D Dshi_0910 thiF; UBA/THIF-type NAD/FAD binding protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D Dshi_1801 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dshi_3089 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Dshi_0913 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:dsh03018] D Dshi_0092 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Dshi_2340 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dshi_2997 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dshi_2715 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Dshi_0015 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dshi_0850 deaD; DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dshi_3334 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dshi_3453 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dshi_1332 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dshi_3571 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Dshi_2919 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dshi_1567 hfq; putative protein Hfq K03666 hfq; host factor-I protein D Dshi_0740 ppk1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Dshi_0751 ppk2; protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Dshi_1595 putative polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Dshi_3489 cca; CCA-adding enzyme K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:dsh03030] D Dshi_3559 dnaQ2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_3448 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_2957 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0102 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0650 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dshi_0921 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dshi_0055 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dshi_1192 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Dshi_3374 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dshi_2373 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dshi_2262 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_0182 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dshi_0023 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:dsh03410] D Dshi_3023 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dshi_0028 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Dshi_3369 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dshi_1689 DNA-glycosylase family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Dshi_3064 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Dshi_3090 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Dshi_0036 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dshi_1886 putative Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_2275 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:dsh03420] D Dshi_1561 mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dshi_1809 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D Dshi_2192 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D Dshi_0644 uvrC; excinuclease ABC K03703 uvrC; excinuclease ABC subunit C D Dshi_2483 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:dsh03430] D Dshi_3466 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dshi_0363 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dshi_2483 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dshi_2727 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dshi_3296 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dshi_2275 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_2957 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0102 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_3374 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dshi_0650 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dshi_0055 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dshi_0921 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dshi_3559 dnaQ2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_3448 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_1192 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:dsh03440] D Dshi_2275 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_3375 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Dshi_0203 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dshi_0648 recR; recombination protein RecR K06187 recR; recombination protein RecR D Dshi_1643 recA; bacterial DNA recombination K03553 recA; recombination protein RecA D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_1104 rufA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dshi_1105 rufB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dshi_1103 rufC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dshi_1510 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Dshi_2957 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0102 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_3374 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dshi_0650 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dshi_0055 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dshi_0921 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dshi_3559 dnaQ2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_3448 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_1192 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Dshi_1926 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:dsh02010] D Dshi_0628 basic organic compound ABC-transporter K05772 tupA; tungstate transport system substrate-binding protein D Dshi_0626 basic organic compound ABC-transporter K05773 tupB; tungstate transport system permease protein D Dshi_0627 basic organic compound ABC-transporter K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dshi_1663 periplasmic binding protein-like II K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Dshi_1664 putative ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D Dshi_1665 ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Dshi_0909 NMT1/THI5 like domain protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D Dshi_0906 binding-protein-dependent transport systems inner membrane component K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D Dshi_0907 ABC transporter related K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D Dshi_3481 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D Dshi_2540 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein D Dshi_3482 modB; molybdenum transport system permease protein modB K02018 modB; molybdate transport system permease protein D Dshi_3483 modC; molybdenum import ATP-binding protein modC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Dshi_2021 putative binding protein component of ABC iron transporter K02012 afuA; iron(III) transport system substrate-binding protein D Dshi_3126 putative periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Dshi_2023 putative ABC transporter permease component K02011 afuB; iron(III) transport system permease protein D Dshi_1341 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Dshi_2325 putative periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dshi_2123 hypothetical protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dshi_1598 inner membrane ABC-transporter permease protein K11070 potC; spermidine/putrescine transport system permease protein D Dshi_1054 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Dshi_2121 putative spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein D Dshi_1599 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein D Dshi_2122 putative spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein D Dshi_2120 potA2; spermidine/putrescine import ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1597 potA1; spermidine/putrescine import ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1055 ABC transporter related K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1438 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dshi_1436 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Dshi_1437 glycine betaine/L-proline ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dshi_0971 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1357 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_0546 ugpC2; ABC-type sugar / sn-glycerol-3-phosphate import ATP-binding protein ugpC K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1250 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_3141 ugpC3; sugar ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1416 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_0974 extracellular solute-binding protein family 1 K10227 smoE; polyol transport system substrate-binding protein D Dshi_0973 binding-protein-dependent transport systems inner membrane component K10228 smoF; polyol transport system permease protein D Dshi_0972 binding-protein-dependent transport systems inner membrane component K10229 smoG; polyol transport system permease protein D Dshi_1652 putative bacterial solute-binding protein 1 family K10232 aglE; alpha-glucoside transport system substrate-binding protein D Dshi_1651 inner membrane ABC transporter permease protein K10233 aglF; alpha-glucoside transport system permease protein D Dshi_1650 inner membrane ABC transporter permease protein K10234 aglG; alpha-glucoside transport system permease protein D Dshi_1648 malK; maltose/maltodextrin import ATP-binding protein K10235 aglK; alpha-glucoside transport system ATP-binding protein D Dshi_0141 ttg2D; toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Dshi_2048 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dshi_1391 mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dshi_2379 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dshi_2050 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dshi_2380 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dshi_2049 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dshi_2842 putative lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dshi_1948 putative basic membrane protein K07335 bmpA; basic membrane protein A and related proteins D Dshi_2964 putative basic membrane protein K07335 bmpA; basic membrane protein A and related proteins D Dshi_2844 integral inner-membrane protein K23535 nupB; general nucleoside transport system permease protein D Dshi_1946 permease component of branched-chain amino acid transport system K23535 nupB; general nucleoside transport system permease protein D Dshi_2962 putative ABC type branched chain amino acid transport system K23535 nupB; general nucleoside transport system permease protein D Dshi_2963 putative ABC type branched chain amino acid transport system K23536 nupC; general nucleoside transport system permease protein D Dshi_1945 putative permease component of branched-chain amino acid transport system K23536 nupC; general nucleoside transport system permease protein D Dshi_2846 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Dshi_1947 rbsA4; ribose import ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_2843 rbsA2; ribose import ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_2961 ABC transporter ATP binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_1421 ribose ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D Dshi_1424 rbsC1; inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Dshi_1423 rbsB2; inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Dshi_1422 rbsA3; ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Dshi_2000 D-xylose-binding periplasmic protein xylF K10543 xylF; D-xylose transport system substrate-binding protein D Dshi_1999 xylH; xylose transport system permease protein K10544 xylH; D-xylose transport system permease protein D Dshi_1998 ABC transporter ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Dshi_0390 rbsB3; D-ribose-binding periplasmic protein precursor K10552 frcB; fructose transport system substrate-binding protein D Dshi_0389 rbsC2; ribose transport system permease protein rbsC K10553 frcC; fructose transport system permease protein D Dshi_0388 rbsA5; ribose import ATP-binding protein rbsA K10554 frcA; fructose transport system ATP-binding protein D Dshi_2434 putative periplasmic binding abc transporter protein K10559 rhaS; rhamnose transport system substrate-binding protein D Dshi_2432 putative binding-protein-dependent transport system permease K10560 rhaP; rhamnose transport system permease protein D Dshi_2431 (monosaccharide) transport system permease protein K10561 rhaQ; rhamnose transport system permease protein D Dshi_2433 rbsA1; ribose import ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D Dshi_3127 ugpB2; sugar ABC transporter K17321 glpV; glycerol transport system substrate-binding protein D Dshi_3130 ugpA2; sugar ABC transporter K17322 glpP; glycerol transport system permease protein D Dshi_3131 ugpE1; sugar ABC transporter K17323 glpQ; glycerol transport system permease protein D Dshi_3128 ugpC5; sugar ABC transporter K17324 glpS; glycerol transport system ATP-binding protein D Dshi_3129 ugpC1; sugar ABC transporter K17325 glpT; glycerol transport system ATP-binding protein D Dshi_2014 ugpB1; sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Dshi_2015 ugpA4; sn-glycerol-3-phosphate transport system permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Dshi_2016 ugpE3; sn-glycerol-3-phosphate transport system permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Dshi_2017 ugpC4; sn-glycerol-3-phosphate import ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Dshi_1533 periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_3568 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_1534 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D Dshi_1535 pstA; phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein D Dshi_1536 pstB; phosphate import ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dshi_2009 putative phosphonates-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein D Dshi_2011 putative ABC transporter inner membrane component K02042 phnE; phosphonate transport system permease protein D Dshi_2012 putative ABC transporter inner membrane component K02042 phnE; phosphonate transport system permease protein D Dshi_2010 phnC1; phosphonates import ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dshi_0318 bztA; glutamate/glutamine/aspartate/asparagine ABC transporter K09969 aapJ; general L-amino acid transport system substrate-binding protein D Dshi_0319 bztB; glutamate/glutamine/aspartate/asparagine ABC transport system permease K09970 aapQ; general L-amino acid transport system permease protein D Dshi_0320 bztC; glutamate/glutamine/aspartate/asparagine ABC transport system permease K09971 aapM; general L-amino acid transport system permease protein D Dshi_0321 bztD; glutamate/glutamine/aspartate/asparagine ABC transport ATP-binding K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dshi_0862 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1522 putative periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0380 livK; high-affinity branched-chain amino acid transport system periplasmic binding protein livK K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_3724 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1977 periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1404 branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0861 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1518 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0376 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1979 putative branched-chain amino acid transport system / permease component K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1403 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_3725 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0379 livM; high-affinity branched-chain amino acid transport system permease protein livM K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0860 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1517 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1978 putative branched-chain amino acid transport system / permease component K01998 livM; branched-chain amino acid transport system permease protein D Dshi_3726 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0859 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1521 putative high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0375 livG; high-affinity branched-chain amino acid transport ATP-binding protein livG K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1981 putative branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1401 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_3727 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0381 livF1; high-affinity branched-chain amino acid transport ATP-binding protein livF K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_0858 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1520 livF2; high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1400 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1980 putative high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_3728 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_2695 putative aliphatic amidase expression-regulating protein K11959 urtA; urea transport system substrate-binding protein D Dshi_2696 inner-membrane translocator K11960 urtB; urea transport system permease protein D Dshi_2697 putative high-affinity branched-chain amino acid transport system K11961 urtC; urea transport system permease protein D Dshi_2698 putative high-affinity branched-chain amino acid transport ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D Dshi_2699 putative high-affinity branched-chain amino acid transport ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D Dshi_0655 oppA; ABC peptide transporter K13893 yejA; microcin C transport system substrate-binding protein D Dshi_0656 oppBC1; ABC peptide transporter K13894 yejB; microcin C transport system permease protein D Dshi_0657 oppBC2; ABC peptide transporter K13895 yejE; microcin C transport system permease protein D Dshi_0658 oppDF; ABC peptide transporter K13896 yejF; microcin C transport system ATP-binding protein D Dshi_1704 putative high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D Dshi_1701 putative high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D Dshi_1702 znuC; zinc import ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dshi_1659 metal ABC transporter substrate-binding lipoprotein K11604 sitA; manganese/iron transport system substrate-binding protein D Dshi_1657 ABC-3 metal transporter K11605 sitC; manganese/iron transport system permease protein D Dshi_1656 ABC-3 metal transporter K11606 sitD; manganese/iron transport system permease protein D Dshi_1658 metal transport system ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D Dshi_2134 putative BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3685 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3688 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3687 cobalt transport protein K16783 bioN; biotin transport system permease protein D Dshi_3686 ATPase K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Dshi_0584 kpsE; capsule polysaccharide export K10107 kpsE; capsular polysaccharide transport system permease protein D Dshi_4076 capsule polysaccharide export protein K10107 kpsE; capsular polysaccharide transport system permease protein D Dshi_4148 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Dshi_0585 kpsT; capsule polysaccharide export K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Dshi_4077 ATPase K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Dshi_0747 lolC; lipoprotein releasing system K09808 lolC_E; lipoprotein-releasing system permease protein D Dshi_0748 lolD; ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Dshi_1853 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C D Dshi_1854 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D Dshi_1855 ccmA; cytochrome c biogenesis ATP-binding export protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Dshi_1190 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Dshi_1189 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Dshi_3585 ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Dshi_3197 nosY; nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein D Dshi_3196 nosF; copper transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein D Dshi_3055 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dshi_3056 ftsE; ABC transporter related K09812 ftsE; cell division transport system ATP-binding protein D Dshi_1765 putative multidrug export ATP-binding/permease protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Dshi_3490 ATPase K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Dshi_2501 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Dshi_0139 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase C 02060 Phosphotransferase system (PTS) [PATH:dsh02060] D Dshi_0207 ptsH; phosphotransferase system K02784 ptsH; phosphocarrier protein HPr D Dshi_0208 ptsL; PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dshi_2062 ptsI; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Dshi_3582 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:dsh03070] D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_1859 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dshi_1858 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D Dshi_0249 efflux transporter K03074 secF; preprotein translocase subunit SecF D Dshi_0258 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dshi_2743 putative preprotein translocase K03075 secG; preprotein translocase subunit SecG D Dshi_1065 hypothetical protein K03075 secG; preprotein translocase subunit SecG D Dshi_0305 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dshi_1860 yajC; preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D Dshi_0328 yidC; preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dshi_3567 secA; preprotein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dshi_2725 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D Dshi_3447 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Dshi_0353 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dshi_1343 Sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dshi_1344 tatB; twin-arginine translocation protein K03117 tatB; sec-independent protein translocase protein TatB D Dshi_1345 tatC; sec-independent protein translocase K03118 tatC; sec-independent protein translocase protein TatC D Dshi_3639 virB1; conjugal transfer (TrbC) or type IV secretory pathway (VirB2) protein K03197 virB2; type IV secretion system protein VirB2 D Dshi_3974 virB1; conjugal transfer (TrbC) or type IV secretory pathway (VirB2) protein K03197 virB2; type IV secretion system protein VirB2 D Dshi_3640 virB2; type IV secretory pathway VirB3 family protein K03198 virB3; type IV secretion system protein VirB3 D Dshi_3975 virB2; type IV secretory pathway VirB3 family protein K03198 virB3; type IV secretion system protein VirB3 D Dshi_3644 virB4; type IV secretion system protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D Dshi_3979 virB4; type IV secretion system protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D Dshi_3646 virB6; conjugal transfer protein TrbG/VirB9/CagX K03204 virB9; type IV secretion system protein VirB9 D Dshi_3981 virB6; conjugal transfer protein TrbG/VirB9/CagX K03204 virB9; type IV secretion system protein VirB9 D Dshi_3985 virB9; TrbL/VirB6 plasmid conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6 D Dshi_3651 virB9; TrbL/VirB6 plasmid conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6 D Dshi_3645 virB5; VirB8 family protein K03203 virB8; type IV secretion system protein VirB8 D Dshi_3980 virB5; VirB8 family protein K03203 virB8; type IV secretion system protein VirB8 D Dshi_3647 virB7; conjugation TrbI family protein K03195 virB10; type IV secretion system protein VirB10 D Dshi_3982 virB7; conjugation TrbI family protein K03195 virB10; type IV secretion system protein VirB10 D Dshi_3641 virB3; CagE TrbE VirB component of type IV transporter system K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D Dshi_3976 virB3; CagE TrbE VirB component of type IV transporter system K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D Dshi_3648 virB8; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D Dshi_3983 virB8; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D Dshi_3655 virD1; TraG family protein/type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dshi_3988 virD1; TraG family protein/type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dshi_0900 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] B B 09132 Signal transduction C 02020 Two-component system [PATH:dsh02020] D Dshi_1532 phoR; histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dshi_1538 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Dshi_1533 periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_3568 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_1921 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Dshi_3299 petR; DNA-binding response regulator PetR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Dshi_3911 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_2733 degP; protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_3037 efflux transporter K07799 mdtA; membrane fusion protein, multidrug efflux system D Dshi_0928 conserved hypothetical protein K07798 cusB; membrane fusion protein, copper/silver efflux system D Dshi_3361 fliC; flagellin K02406 fliC; flagellin D Dshi_3260 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Dshi_2280 signal transduction histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Dshi_2279 two component transcriptional regulator K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Dshi_0824 histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D Dshi_3125 qseC; sensor protein QseC K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Dshi_3124 qseB; transcriptional regulatory protein QseB K07774 tctD; two-component system, OmpR family, response regulator TctD D Dshi_4195 hypothetical membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_2448 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_3121 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_1218 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_2439 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_4220 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_3122 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_1219 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_2440 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_4196 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_4219 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_3123 uncharacterized protein conserved in bacteria K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_1220 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_2450 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_2441 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_4197 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_1512 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Dshi_3373 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D Dshi_0449 two component transcriptional regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D Dshi_0211 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Dshi_0212 two component transcriptional regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D Dshi_3149 ddpX; putative D-alanyl-d-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dshi_1045 HpcH/HpaI aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D Dshi_2490 citE1; citrate lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D Dshi_1427 citF; citrate CoA-transferase K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D Dshi_1896 algD; GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Dshi_2565 response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Dshi_2345 two component transcriptional regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Dshi_1819 putative transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_0311 luxR1; transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_1130 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dshi_1129 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dshi_1127 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dshi_1126 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dshi_1125 type II secretion system protein K12510 tadB; tight adherence protein B D Dshi_1124 type II secretion system protein K12511 tadC; tight adherence protein C D Dshi_2833 glnD; [Protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Dshi_0143 glnK; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Dshi_1838 putative nitrogen regulation protein PII K04751 glnB; nitrogen regulatory protein P-II 1 D Dshi_1575 ntrB; nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Dshi_1574 ntrC; nitrogen assimilation regulator receiver protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_1573 ntrY; histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dshi_1572 ntrX; nitrogen assimilation regulator receiver protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_1197 dctB; integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1080 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1196 dctD; two component, sigma54 specific, transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Dshi_3584 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D Dshi_2820 response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D Dshi_1644 histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_1893 LOV-regulator, Blue-light sensing K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_1470 conserved hypothetical protein K13588 chpT; histidine phosphotransferase ChpT D Dshi_1508 ctrA; cell cycle transcriptional regulator ctrA K13584 ctrA; two-component system, cell cycle response regulator CtrA D Dshi_1089 TRAP dicarboxylate transporter-DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Dshi_4203 dctP2; TRAP transporter - DctP subunit precursor K11688 dctP; C4-dicarboxylate-binding protein DctP D Dshi_1090 tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dshi_1833 putative TRAP transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dshi_1037 TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_1091 TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_0605 dctM5; TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_0801 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_2033 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_3001 dctM2; TRAP transporter - DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_3159 TRAP transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_4205 dctM2; TRAP transporter - DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_2567 multi-sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D Dshi_3110 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dshi_3432 regB; sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Dshi_3430 regA; photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA D Dshi_2899 putative light-harvesting protein B-800/850 alpha chain K08930 pucA; light-harvesting protein B-800-850 alpha chain D Dshi_2900 pucB; light-harvesting protein B-800/850 beta chain K08939 pucB; light-harvesting protein B-800-850 beta chain D Dshi_3524 pufM; reaction center protein M chain K08929 pufM; photosynthetic reaction center M subunit D Dshi_3523 pufL; reaction center protein L chain K08928 pufL; photosynthetic reaction center L subunit D Dshi_3522 pufA; light-harvesting protein B-870 alpha chain K08926 pufA; light-harvesting complex 1 alpha chain D Dshi_3521 pufB; light-harvesting protein B-870 beta chain K08927 pufB; light-harvesting complex 1 beta chain D Dshi_3540 puhA; reaction center protein H chain K13991 puhA; photosynthetic reaction center H subunit D Dshi_3278 petA; ubiquinol-cytochrome c reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Dshi_3277 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Dshi_3276 petC; cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Dshi_0654 cycM; cytochrome c552 K08738 CYC; cytochrome c D Dshi_2672 hypothetical protein K08738 CYC; cytochrome c D Dshi_3169 cycA1; cytochrome c2 K08738 CYC; cytochrome c D Dshi_2800 cytochrome c K08738 CYC; cytochrome c D Dshi_0475 cytC; cytochrome c class I K08738 CYC; cytochrome c D Dshi_3547 cycA2; cytochrome c2 K08738 CYC; cytochrome c D Dshi_0508 cytochrome c class I K08738 CYC; cytochrome c D Dshi_0661 fixN; cytochrome c oxidase K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Dshi_0662 fixO; cytochrome c oxidase K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Dshi_0663 fixQ; cytochrome c oxidase K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Dshi_0664 fixP; cytochrome c oxidase K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Dshi_2688 appC; cytochrome bd-II oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dshi_2689 cydB; cytochrome bd-I oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_2254 putative polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Dshi_2613 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Dshi_0312 luxI; N-acyl-L-homoserine lactone synthetase-like protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_0467 sensor histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:dsh04148] D Dshi_2309 arginase K01476 rocF; arginase [EC:3.5.3.1] D Dshi_1375 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Dshi_3278 petA; ubiquinol-cytochrome c reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:dsh02024] D Dshi_1567 hfq; putative protein Hfq K03666 hfq; host factor-I protein D Dshi_1796 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dshi_1798 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dshi_0312 luxI; N-acyl-L-homoserine lactone synthetase-like protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_1526 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Dshi_2745 uncharacterized isomerase K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D Dshi_1819 putative transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_0311 luxR1; transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_2851 autoinducer synthetase K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_4152 autoinducer synthesis protein K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184] D Dshi_2852 transcriptional regulator K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR D Dshi_1052 spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Dshi_0862 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1522 putative periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0380 livK; high-affinity branched-chain amino acid transport system periplasmic binding protein livK K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_3724 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1977 periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1404 branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0861 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1518 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0376 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1979 putative branched-chain amino acid transport system / permease component K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1403 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_3725 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0379 livM; high-affinity branched-chain amino acid transport system permease protein livM K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0860 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1517 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1978 putative branched-chain amino acid transport system / permease component K01998 livM; branched-chain amino acid transport system permease protein D Dshi_3726 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0859 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1521 putative high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0375 livG; high-affinity branched-chain amino acid transport ATP-binding protein livG K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1981 putative branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1401 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_3727 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0381 livF1; high-affinity branched-chain amino acid transport ATP-binding protein livF K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_0858 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1520 livF2; high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1400 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1980 putative high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_3728 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1815 putative transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D Dshi_2503 hypothetical protein K20276 bapA; large repetitive protein D Dshi_1000 fadD4; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0373 fadD3; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_3110 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dshi_1703 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Dshi_0039 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Dshi_2256 ribD; riboflavin biosynthesis protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dshi_3013 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dshi_2693 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dshi_0872 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_0877 4-phytase K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_1490 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_1545 putative extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_2595 putative extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3011 ABC transporter related K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3792 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3552 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_0881 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_1489 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_3793 inner-membrane translocator K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_2598 binding-protein-dependent transport system permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_3010 ABC transporter related K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_0882 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_1488 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_3794 inner-membrane translocator K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_2599 binding-protein-dependent transport system permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_3009 ABC transporter related K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_1487 oligopeptide/dipeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_3796 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_2596 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_3008 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_0884 oligopeptide/dipeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_2597 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dshi_3795 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dshi_0328 yidC; preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dshi_0258 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dshi_2743 putative preprotein translocase K03075 secG; preprotein translocase subunit SecG D Dshi_1065 hypothetical protein K03075 secG; preprotein translocase subunit SecG D Dshi_0305 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dshi_1860 yajC; preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D Dshi_3567 secA; preprotein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dshi_2725 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D Dshi_3447 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Dshi_0353 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:dsh02030] D Dshi_1421 ribose ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D Dshi_1845 putative flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG D Dshi_1409 hypothetical protein K02416 fliM; flagellar motor switch protein FliM D Dshi_3266 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dshi_3260 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Dshi_3380 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D Dshi_2940 conserved hypothetical protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:dsh02040] D Dshi_3249 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dshi_3264 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dshi_1845 putative flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG D Dshi_3246 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dshi_3263 fliL2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dshi_3255 fliL1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dshi_1409 hypothetical protein K02416 fliM; flagellar motor switch protein FliM D Dshi_3266 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dshi_3267 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dshi_3250 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dshi_3257 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dshi_3258 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dshi_3256 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dshi_3253 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Dshi_3247 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dshi_3248 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dshi_3365 flgD; flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D Dshi_3379 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D Dshi_3251 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Dshi_3252 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Dshi_3254 flgH; flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Dshi_3376 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D Dshi_3363 putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Dshi_3378 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dshi_3377 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D Dshi_3361 fliC; flagellin K02406 fliC; flagellin D Dshi_3260 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Dshi_3380 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D Dshi_2940 conserved hypothetical protein K02557 motB; chemotaxis protein MotB D Dshi_2261 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D Dshi_3584 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:dsh04980] D Dshi_0218 putative ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dshi_2582 LAO/AO transport system kinase K07588 MMAA; GTPase [EC:3.6.5.-] D Dshi_0726 bhbA; methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Dshi_1073 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1074 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dshi_1677 putative dehypteroate synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:dsh01501] D Dshi_0043 porin K08720 ompU; outer membrane protein OmpU D Dshi_1726 nagZ; beta-hexosamidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Dshi_3133 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_1171 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dshi_0592 ftsI1; division-specific transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dshi_2472 ftsI2; peptidoglycan synthetase ftsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:dsh01502] D Dshi_3149 ddpX; putative D-alanyl-d-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dshi_2419 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dshi_2378 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dshi_2470 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dshi_2469 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dshi_2423 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:dsh01503] D Dshi_3402 neutral zinc metallopeptidase K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_0412 fas; beta-Ig-H3/fasciclin K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_1895 hypothetical protein K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_1169 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dshi_3911 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_2733 degP; protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_1502 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:dsh01000] C 01001 Protein kinases [BR:dsh01001] D Dshi_0900 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Dshi_0072 rsbW; serine-protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Dshi_3389 ATPase involved in chromosome partitioning K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dshi_1532 phoR; histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dshi_1921 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Dshi_2280 signal transduction histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Dshi_0824 histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D Dshi_3125 qseC; sensor protein QseC K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Dshi_0211 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Dshi_2344 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Dshi_1575 ntrB; nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Dshi_1573 ntrY; histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dshi_1197 dctB; integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1080 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1644 histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_1893 LOV-regulator, Blue-light sensing K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_2567 multi-sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D Dshi_3432 regB; sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Dshi_0467 sensor histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D Dshi_3834 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:dsh01009] D Dshi_3426 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dshi_3316 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:dsh01002] D Dshi_0359 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dshi_3952 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dshi_3614 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dshi_1121 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dshi_1289 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dshi_1587 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dshi_1229 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Dshi_3925 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Dshi_2132 purF; amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dshi_0002 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dshi_1293 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dshi_0124 intracellular protease K05520 yhbO; deglycase [EC:3.5.1.124] D Dshi_3496 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D Dshi_1619 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D Dshi_0943 abortive infection protein K07052 K07052; CAAX protease family protein D Dshi_0130 abi; abortive infection protein K07052 K07052; CAAX protease family protein D Dshi_1223 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Dshi_2973 dcp; peptidyl-dipeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Dshi_2603 oligoendopeptidase K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D Dshi_3402 neutral zinc metallopeptidase K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_0412 fas; beta-Ig-H3/fasciclin K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_1895 hypothetical protein K01406 prtC; serralysin [EC:3.4.24.40] D Dshi_3149 ddpX; putative D-alanyl-d-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dshi_0361 pqqL2; peptidase M16 protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Dshi_0362 pqqL1; peptidase M16 protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Dshi_1191 pepA1; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dshi_3234 pepA2; leucine aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dshi_0578 rDP; peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Dshi_3020 dapE2; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dshi_0012 dapE1; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dshi_0117 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Dshi_2721 putative metallopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Dshi_1511 carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Dshi_1115 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dshi_1498 ecfE; putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Dshi_3338 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Dshi_3870 peptidase S1 and S6 chymotrypsin/Hap K04775 ydgD; protease YdgD [EC:3.4.21.-] D Dshi_3911 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_2733 degP; protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_0257 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62] D Dshi_0923 dacC1; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dshi_2208 putative D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Dshi_1388 clpP; endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Dshi_1777 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Dshi_1803 lexA; lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dshi_0199 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dshi_3551 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Dshi_0091 prc; carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Dshi_1565 acylase precursor K01434 pac; penicillin G amidase [EC:3.5.1.11] D Dshi_1200 rhomboid family protein K07059 K07059; rhomboid family protein D Dshi_2175 putative phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease D Dshi_3440 hslV; ATP-dependent HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Dshi_0071 ggt1; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0675 ggt2; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_4194 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dshi_0064 pmbA; peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Dshi_1139 tldD; peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D Dshi_2735 hflC; protein hflC K04087 hflC; modulator of FtsH protease HflC D Dshi_2736 hflK; Protein HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:dsh01003] D Dshi_3309 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dshi_1171 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dshi_1898 putative glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Dshi_4170 periplasmic glucan biosynthesis protein K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D Dshi_1821 conserved hypothetical protein K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266] C 01005 Lipopolysaccharide biosynthesis proteins [BR:dsh01005] D Dshi_1502 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Dshi_1504 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Dshi_2415 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Dshi_1618 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Dshi_1503 conserved hypothetical protein DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Dshi_0031 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Dshi_0079 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Dshi_0032 kdtA; three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Dshi_0583 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Dshi_3575 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dshi_3588 yrbH; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Dshi_3241 lpcC; lipopolysaccharide core biosynthesis mannosyltransferase K12989 lpcC; mannosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:dsh01011] D Dshi_0977 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dshi_2420 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dshi_2422 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dshi_2451 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dshi_2471 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dshi_2419 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dshi_2378 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dshi_1760 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dshi_2469 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dshi_2423 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dshi_3593 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dshi_2834 putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D Dshi_1171 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dshi_0592 ftsI1; division-specific transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dshi_2472 ftsI2; peptidoglycan synthetase ftsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Dshi_0923 dacC1; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dshi_2208 putative D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Dshi_3309 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dshi_3496 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D Dshi_1619 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D Dshi_3149 ddpX; putative D-alanyl-d-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dshi_3338 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Dshi_0150 putative lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dshi_3444 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D Dshi_0016 mltB2; lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Dshi_1864 putative membrane-bound lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Dshi_2179 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Dshi_1169 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:dsh01004] D Dshi_2183 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dshi_1720 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dshi_1009 fabB; beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Dshi_2180 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dshi_2891 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1339 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_2182 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1429 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1049 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_3903 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dshi_1010 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Dshi_1501 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dshi_1790 fabI2; NADH dependent enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_1008 fabI1; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dshi_2677 lipolytic protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Dshi_0603 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Dshi_2218 putative Acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Dshi_3553 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_1399 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dshi_0825 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Dshi_1000 fadD4; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0373 fadD3; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0853 fadD2; AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Dshi_3403 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Dshi_2854 putative glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Dshi_1719 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dshi_3095 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dshi_3054 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:dsh01008] D Dshi_2002 hypothetical protein K21162 sgcE4; enediyne biosynthesis protein E4 D Dshi_2199 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:dsh01006] D Dshi_3295 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Dshi_3514 crtE; geranylgeranyl pyrophosphate synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dshi_3072 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dshi_1495 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dshi_3509 crtB; phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Dshi_1695 conserved hypothetical protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Dshi_1492 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dshi_3100 ubiA; para-hydroxybenzoate--polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Dshi_1141 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dshi_3530 bchG; bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133] C 01007 Amino acid related enzymes [BR:dsh01007] D Dshi_2206 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Dshi_2748 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1805 gltX2; glutamyl-tRNA synthase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1474 glutamyl-tRNA synthetase class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Dshi_2151 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dshi_2836 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dshi_1698 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dshi_1728 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dshi_2707 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dshi_1933 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dshi_2087 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dshi_0057 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dshi_2633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dshi_2955 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dshi_2404 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dshi_2402 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dshi_1863 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dshi_0744 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dshi_0777 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dshi_1642 alaS; alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dshi_0235 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dshi_0237 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dshi_0762 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dshi_0145 amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Dshi_2088 putative histidinol aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_2946 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dshi_1182 hemA2; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3190 hemA3; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_3546 hemA1; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Dshi_0178 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dshi_1366 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Dshi_0798 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dshi_2042 tpa; taurin--pyruvate aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D Dshi_3150 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Dshi_2837 aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_3301 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_4206 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dshi_0887 sgaA2; serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2090 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_2489 putative serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3325 sgaA1; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Dshi_3317 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:dsh00194] D Dshi_0436 atpC2; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dshi_2933 atpC1; ATP synhtase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dshi_0435 atpD1; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dshi_2934 atpD2; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dshi_0443 atpG1; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dshi_2935 atpG2; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dshi_2936 atpA1; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dshi_0442 atpA2; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dshi_2937 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dshi_0441 atpF1; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_3027 atpF2; ATP synthase F0 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_3028 atpX; ATP synthase F0 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dshi_0440 atpE1; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dshi_3029 atpE2; ATP synthase F0 K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dshi_0439 atpB2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_3030 atpB1; ATP synthase F0 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_3031 atpI; ATP synthase F0 K02116 atpI; ATP synthase protein I D Dshi_0437 ATP synthase F0F1, subunit K02116 atpI; ATP synthase protein I D Dshi_3523 pufL; reaction center protein L chain K08928 pufL; photosynthetic reaction center L subunit D Dshi_3524 pufM; reaction center protein M chain K08929 pufM; photosynthetic reaction center M subunit D Dshi_3540 puhA; reaction center protein H chain K13991 puhA; photosynthetic reaction center H subunit D Dshi_3525 pufC; photosynthetic reaction center cytochrome c subunit precursor K13992 pufC; photosynthetic reaction center cytochrome c subunit D Dshi_3522 pufA; light-harvesting protein B-870 alpha chain K08926 pufA; light-harvesting complex 1 alpha chain D Dshi_3521 pufB; light-harvesting protein B-870 beta chain K08927 pufB; light-harvesting complex 1 beta chain D Dshi_2899 putative light-harvesting protein B-800/850 alpha chain K08930 pucA; light-harvesting protein B-800-850 alpha chain D Dshi_2900 pucB; light-harvesting protein B-800/850 beta chain K08939 pucB; light-harvesting protein B-800-850 beta chain B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:dsh03000] D Dshi_1491 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Dshi_4172 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Dshi_2282 putative transcriptional regulator K07506 K07506; AraC family transcriptional regulator D Dshi_3024 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Dshi_3631 transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D Dshi_1525 HTH-type transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D Dshi_3068 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Dshi_2079 HTH-type transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Dshi_0995 transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Dshi_0727 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Dshi_2523 putative hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Dshi_3802 hydrogen peroxide sensing transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Dshi_0711 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Dshi_1431 transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Dshi_3715 transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Dshi_1440 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D Dshi_2990 HTH-type transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D Dshi_0631 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Dshi_2008 putative glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Dshi_1653 HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Dshi_2029 HTH-type transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Dshi_4217 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Dshi_3322 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Dshi_0694 transcriptional regulator K03710 K03710; GntR family transcriptional regulator D Dshi_2758 transcriptional regulator K03710 K03710; GntR family transcriptional regulator D Dshi_3026 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dshi_1972 putative pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dshi_4185 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D Dshi_1835 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Dshi_2044 HTH-type transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Dshi_0609 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Dshi_0960 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D Dshi_1365 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D Dshi_1874 putative regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Dshi_0245 asnC; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_2477 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_2394 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_1156 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Dshi_2395 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Dshi_1819 putative transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_0311 luxR1; transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Dshi_1815 putative transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D Dshi_2852 transcriptional regulator K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR D Dshi_0758 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Dshi_3790 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_1260 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_4066 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_0776 cobalamin B12-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Dshi_3532 ppaA; regulatory protein PpaA K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Dshi_2142 putative ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dshi_1703 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Dshi_1011 ferric uptake regulator K09826 irr; Fur family transcriptional regulator, iron response regulator D Dshi_0886 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Dshi_0800 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Dshi_3110 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dshi_2521 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dshi_2528 putative transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dshi_0660 fixK; transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dshi_0447 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dshi_3764 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Dshi_4040 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Dshi_3189 transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Dshi_3191 dnr; transcriptional regulator Dnr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Dshi_1633 iscR; HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Dshi_2306 putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Dshi_0587 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Dshi_1253 transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D Dshi_0716 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D Dshi_1405 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D Dshi_2488 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D Dshi_1221 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D Dshi_3611 iron (metal) dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Dshi_3949 iron (metal) dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Dshi_3133 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Dshi_1330 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Dshi_0763 transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D Dshi_4156 acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Dshi_3480 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein D Dshi_2718 putative transcriptional regulator K07727 K07727; putative transcriptional regulator D Dshi_2311 putA; bifunctional protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dshi_3193 nosR3; nitrous oxide reductase regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Dshi_0686 nosR1; regulator of nitric oxide reductase transcription K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Dshi_3181 nosR2; nitrous oxide reductase regulatory protein NosR K19343 nirI; NosR/NirI family transcriptional regulator, nitrite reductase regulator D Dshi_1203 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Dshi_3458 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3847 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4022 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4103 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3733 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3744 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4212 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3856 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_0786 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Dshi_3464 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Dshi_0908 transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Dshi_3828 paaX; transcriptional regulator PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D Dshi_0414 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Dshi_0557 greA2; GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Dshi_3083 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Dshi_1884 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_2385 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_1411 transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D Dshi_2257 nrdR; transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR D Dshi_2475 protein mraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:dsh03021] D Dshi_0309 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dshi_0268 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dshi_0269 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dshi_0193 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dshi_2261 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D Dshi_3423 rpoE1; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Dshi_2609 rpoH2; RNA polymerase K03089 rpoH; RNA polymerase sigma-32 factor D Dshi_2978 rpoH1; RNA polymerase sigma 32 factor K03089 rpoH; RNA polymerase sigma-32 factor D Dshi_3584 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D Dshi_3561 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D Dshi_2249 nusB; N utilization substance protein B-like protein K03625 nusB; transcription antitermination protein NusB D Dshi_0259 nusG; NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Dshi_3485 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Dshi_0073 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist D Dshi_0072 rsbW; serine-protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Dshi_1884 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_2385 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_1411 transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D Dshi_3076 greA1; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Dshi_3453 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:dsh03019] D Dshi_2340 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D Dshi_0200 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dshi_1332 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dshi_0015 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dshi_2715 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Dshi_0850 deaD; DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dshi_3334 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dshi_2997 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dshi_3453 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dshi_3571 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Dshi_2919 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dshi_1567 hfq; putative protein Hfq K03666 hfq; host factor-I protein D Dshi_0740 ppk1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Dshi_0751 ppk2; protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Dshi_1595 putative polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Dshi_3489 cca; CCA-adding enzyme K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Dshi_0092 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Dshi_0209 uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ D Dshi_2580 hrpB; ATP-dependent RNA helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:dsh03011] D Dshi_1025 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Dshi_1548 rbsB1; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Dshi_0288 rpsC; ribosomal protein S3 RpsC K02982 RP-S3; small subunit ribosomal protein S3 D Dshi_2948 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Dshi_0302 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Dshi_2186 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Dshi_0272 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Dshi_0299 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Dshi_1601 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Dshi_0275 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Dshi_0308 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Dshi_0271 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Dshi_0307 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Dshi_0298 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Dshi_2994 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Dshi_0348 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Dshi_0294 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Dshi_2187 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Dshi_0286 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Dshi_3371 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Dshi_0246 putative ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Dshi_0261 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Dshi_0285 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Dshi_0276 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Dshi_0277 rplD; 50S ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Dshi_0297 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Dshi_0300 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Dshi_2188 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Dshi_0265 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Dshi_0260 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Dshi_0266 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dshi_1602 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Dshi_0295 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Dshi_0304 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Dshi_0289 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Dshi_0310 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Dshi_0301 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Dshi_0341 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Dshi_0231 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Dshi_1460 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Dshi_0287 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Dshi_0278 rplW; 50S Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Dshi_0296 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Dshi_1461 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Dshi_2583 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Dshi_0293 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Dshi_0303 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Dshi_0340 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Dshi_1718 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Dshi_2781 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Dshi_0333 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Dshi_0230 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Dshi_0387 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Dshi_0950 rplY; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Dshi_6010 5SrRNA K01985 5SrRNA; 5S ribosomal RNA D Dshi_6017 5SrRNA K01985 5SrRNA; 5S ribosomal RNA D Dshi_6006 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6013 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6009 23SrRNA K01980 23SrRNA; 23S ribosomal RNA D Dshi_6016 23SrRNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:dsh03009] D Dshi_0200 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dshi_0201 era; GTP-binding protein Era K03595 era; GTPase D Dshi_1466 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Dshi_1884 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_2385 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D Dshi_1411 transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D Dshi_3561 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D Dshi_2249 nusB; N utilization substance protein B-like protein K03625 nusB; transcription antitermination protein NusB D Dshi_0259 nusG; NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Dshi_1185 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Dshi_3033 rsmB1; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Dshi_1645 rsmB2; rRNA (cytosine-C(5)-)-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Dshi_0671 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Dshi_0115 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Dshi_3099 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Dshi_3456 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dshi_2474 mraW; S-adenosyl-L-methionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Dshi_2831 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Dshi_2571 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Dshi_1672 ribosomal RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Dshi_0088 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Dshi_1771 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Dshi_3311 radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Dshi_3492 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Dshi_3106 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Dshi_2790 RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Dshi_0315 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Dshi_2610 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dshi_2908 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Dshi_2841 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Dshi_1148 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D Dshi_3341 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Dshi_0344 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Dshi_2618 UPF0004 protein yliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Dshi_1100 prmA; ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Dshi_2340 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D Dshi_1064 rufX; holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Dshi_0850 deaD; DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dshi_1166 engA; small GTP-binding protein K03977 engA; GTPase D Dshi_1566 hflX; GTP-binding protein K03665 hflX; GTPase D Dshi_3084 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dshi_0194 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dshi_3041 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Dshi_3560 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Dshi_0087 iojap-like protein K09710 ybeB; ribosome-associated protein D Dshi_1015 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Dshi_3583 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor D Dshi_0954 engD; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:dsh03016] D Dshi_0254 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D Dshi_2748 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1805 gltX2; glutamyl-tRNA synthase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_0744 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dshi_1933 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dshi_0057 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dshi_2707 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dshi_1728 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dshi_2633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dshi_1642 alaS; alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dshi_0777 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dshi_1863 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dshi_1698 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dshi_2087 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dshi_2955 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dshi_0235 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dshi_0237 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dshi_2151 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dshi_2836 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dshi_2798 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Dshi_2313 aminoacyl-tRNA synthetase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D Dshi_0679 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Dshi_1021 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Dshi_1938 truA; pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Dshi_3042 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Dshi_1632 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dshi_3084 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dshi_1492 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dshi_3454 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Dshi_3455 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dshi_3350 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dshi_3574 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Dshi_0332 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Dshi_3463 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Dshi_1887 putative ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Dshi_3589 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5] D Dshi_2206 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Dshi_2404 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dshi_2402 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dshi_1474 glutamyl-tRNA synthetase class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Dshi_2789 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Dshi_2512 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Dshi_1576 dus; tRNA-dihydrouidine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Dshi_1019 RNA modification enzyme K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Dshi_3229 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Dshi_1513 putative tRNA/rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D Dshi_1475 gid; gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dshi_0342 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Dshi_3070 methyltransferase type 11 K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Dshi_3106 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Dshi_1506 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dshi_0330 ydaO; PP-loop ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Dshi_2339 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Dshi_2349 putative iron-binding protein iscA K13628 iscA; iron-sulfur cluster assembly protein D Dshi_2092 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ D Dshi_1180 queA; queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Dshi_3307 putative 4Fe-4S binding domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Dshi_3349 ybbB; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Dshi_2346 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Dshi_1114 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Dshi_2840 peptidase M22 K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Dshi_3415 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Dshi_3434 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Dshi_0015 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dshi_2997 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:dsh03012] D Dshi_3563 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Dshi_1149 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Dshi_1349 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Dshi_1549 tsf; translation elongation factor K02357 tsf; elongation factor Ts D Dshi_0223 tufA2; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0274 tufA1; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0273 fusA; translation elongation factor G K02355 fusA; elongation factor G D Dshi_1733 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Dshi_1494 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D Dshi_1732 hemK; putative protein methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Dshi_0947 pthA; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Dshi_0982 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Dshi_2094 efp; translation elongation factor P K02356 efp; elongation factor P D Dshi_1172 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D Dshi_1336 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D Dshi_3342 class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:dsh03110] D Dshi_2939 clpA; ATP-dependent Clp protease ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Dshi_0617 clpB; chaperone protein clpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Dshi_1387 clpX; ATP-dependent Clp protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Dshi_3441 hslU; ATP-dependent HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Dshi_3571 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Dshi_2919 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dshi_3570 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dshi_0737 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Dshi_3487 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D Dshi_3465 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D Dshi_2796 heat shock protein K13993 HSP20; HSP20 family protein D Dshi_2892 putative small heat shock (HSP20) protein K04080 ibpA; molecular chaperone IbpA D Dshi_0784 RNA-binding S4 K04762 hslR; ribosome-associated heat shock protein Hsp15 D Dshi_2920 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D Dshi_3911 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_2733 degP; protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107] D Dshi_1115 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dshi_0439 atpB2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_3030 atpB1; ATP synthase F0 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dshi_3447 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Dshi_2585 conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A D Dshi_3619 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Dshi_3957 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Dshi_0257 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62] D Dshi_1795 putative peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Dshi_3566 ppiC; PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Dshi_1187 SurA domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Dshi_3439 trxA1; thioredoxin K03671 TXN; thioredoxin D Dshi_3285 trx; putative thioredoxin K03671 TXN; thioredoxin D Dshi_0035 trxA2; thioredoxin domain protein K05838 ybbN; putative thioredoxin D Dshi_1876 putative glutaredoxin 3 K03676 grxC; glutaredoxin 3 D Dshi_3507 grxC; glutaredoxin-3 K03676 grxC; glutaredoxin 3 D Dshi_1710 putative monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D Dshi_3597 disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Dshi_3935 disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Dshi_1852 putative thioredoxin K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Dshi_4052 ccmG; cytochrome c biogenesis protein CcmG K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Dshi_3776 ccmG; cytochrome c biogenesis protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Dshi_3410 dsbE; thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:dsh04131] D Dshi_1350 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dshi_3007 ybgG; alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_1740 gap2; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_1742 gap1; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_2685 gap3; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_0228 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dshi_3337 major facilitator superfamily (MFS) transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:dsh03032] D Dshi_0182 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dshi_3288 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D Dshi_1721 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Dshi_1027 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Dshi_3373 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D Dshi_2373 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dshi_2262 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dshi_4102 repC; replication protein C K18996 repC; replication initiation protein RepC D Dshi_4021 repC; replication protein C K18996 repC; replication initiation protein RepC D Dshi_3743 repC; replication protein C K18996 repC; replication initiation protein RepC D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_2957 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0102 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_3374 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dshi_1192 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Dshi_0055 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dshi_0921 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dshi_3559 dnaQ2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_3448 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_0650 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dshi_0023 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dshi_1476 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dshi_3355 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dshi_0221 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Dshi_0749 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Dshi_1137 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:dsh03036] D Dshi_0200 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_3699 putative methylase/helicase K26273 SBNO; protein strawberry notch D Dshi_4008 putative methylase/helicase K26273 SBNO; protein strawberry notch D Dshi_1024 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Dshi_3288 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D Dshi_1721 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Dshi_1027 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Dshi_0426 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM D Dshi_3373 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D Dshi_0070 yccV; hemimethylated DNA binding protein K11940 hspQ; heat shock protein HspQ D Dshi_3912 ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Dshi_3839 ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Dshi_4223 ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Dshi_1567 hfq; putative protein Hfq K03666 hfq; host factor-I protein D Dshi_0711 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Dshi_0245 asnC; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_2477 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_2394 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Dshi_0163 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Dshi_1725 putative Segregation and condensation protein A K05896 scpA; segregation and condensation protein A D Dshi_1724 putative segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Dshi_3753 scpB; chromosome segregation and condensation protein K06024 scpB; segregation and condensation protein B D Dshi_4029 scpB; chromosome segregation and condensation protein ScpB K06024 scpB; segregation and condensation protein B D Dshi_2417 ftsA; cell division protein K03590 ftsA; cell division protein FtsA D Dshi_3056 ftsE; ABC transporter related K09812 ftsE; cell division transport system ATP-binding protein D Dshi_2472 ftsI2; peptidoglycan synthetase ftsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Dshi_0059 ftsK; DNA translocase K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Dshi_2473 hypothetical protein K03586 ftsL; cell division protein FtsL D Dshi_2418 putative cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D Dshi_2424 putative cell division protein ftsW K03588 ftsW; cell division protein FtsW D Dshi_3055 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dshi_2416 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D Dshi_1736 putative cell division protein ZapA K09888 zapA; cell division protein ZapA D Dshi_0112 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Dshi_1169 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dshi_0595 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dshi_0594 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Dshi_0593 mreD2; putative rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Dshi_0591 mreD1; rod shape-determining protein MreD K05837 rodA; rod shape determining protein RodA D Dshi_0337 parA2; ATPases involved in chromosome partitioning-like protein K03496 parA; chromosome partitioning protein D Dshi_3457 parA1; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_2216 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Dshi_4023 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_4104 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_3745 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_3855 parA; partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_4213 parA; partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_3458 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3847 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4022 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4103 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3733 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3744 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4212 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3856 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_0221 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Dshi_0749 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Dshi_3455 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dshi_3456 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dshi_1475 gid; gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dshi_5002 hypothtical protein K03733 xerC; integrase/recombinase XerC D Dshi_1611 xerD; tyrosine recombinase K04763 xerD; integrase/recombinase XerD D Dshi_3629 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_3661 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_3696 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_3697 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_3700 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_4005 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_4006 phage integrase K04763 xerD; integrase/recombinase XerD D Dshi_2476 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_0507 MRP-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_3271 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_0326 engB; GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:dsh03400] D Dshi_2318 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Dshi_1225 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Dshi_1389 putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Dshi_0028 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Dshi_3023 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dshi_3564 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dshi_3486 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dshi_0384 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dshi_2915 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dshi_2975 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dshi_3024 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Dshi_0599 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D Dshi_3572 alkB2; alpha-ketoglutarate-dependent dioxygenase alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D Dshi_3090 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Dshi_1689 DNA-glycosylase family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Dshi_3064 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Dshi_3369 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dshi_0036 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dshi_1886 putative Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dshi_2275 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dshi_1509 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dshi_2909 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dshi_1809 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D Dshi_2192 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D Dshi_0644 uvrC; excinuclease ABC K03703 uvrC; excinuclease ABC subunit C D Dshi_2483 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dshi_0268 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dshi_0269 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dshi_0309 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dshi_0193 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dshi_1561 mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dshi_3466 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dshi_0363 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dshi_2727 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dshi_3296 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dshi_2957 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_0102 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dshi_3374 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dshi_1192 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Dshi_0055 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dshi_0921 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dshi_3559 dnaQ2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_3448 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dshi_0650 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_1643 recA; bacterial DNA recombination K03553 recA; recombination protein RecA D Dshi_1104 rufA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dshi_1105 rufB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dshi_1103 rufC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dshi_1926 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Dshi_2129 putative DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Dshi_3375 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Dshi_1510 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Dshi_0203 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dshi_0648 recR; recombination protein RecR K06187 recR; recombination protein RecR D Dshi_2413 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D Dshi_3438 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Dshi_0401 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Dshi_3220 cas1; cas1: CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Dshi_1614 yjgR; hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Dshi_1476 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dshi_3355 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dshi_1137 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Dshi_3288 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D Dshi_1721 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Dshi_1027 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Dshi_3334 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dshi_1024 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Dshi_0385 dinB; DNA-directed DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Dshi_1803 lexA; lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dshi_2826 conserved hypothetical protein K14160 imuA; protein ImuA D Dshi_3996 conserved hypothetical protein K14160 imuA; protein ImuA D Dshi_3231 putative DNA repair enzyme K14161 imuB; protein ImuB D Dshi_3997 putative DNA repair enzyme K14161 imuB; protein ImuB D Dshi_3998 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Dshi_1119 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Dshi_1785 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dshi_2949 putative Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:dsh03029] D Dshi_3277 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Dshi_3563 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Dshi_1149 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Dshi_1549 tsf; translation elongation factor K02357 tsf; elongation factor Ts D Dshi_0223 tufA2; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0274 tufA1; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0273 fusA; translation elongation factor G K02355 fusA; elongation factor G D Dshi_0783 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D Dshi_0201 era; GTP-binding protein Era K03595 era; GTPase D Dshi_2151 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dshi_0057 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dshi_2633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dshi_1728 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dshi_0061 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dshi_2785 gatA; glutamyl-tRNA(Gln) amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dshi_1207 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dshi_2786 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dshi_1606 ssb; single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dshi_1499 yaeT; hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D Dshi_3571 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Dshi_3465 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D Dshi_2919 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dshi_2920 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D Dshi_3570 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dshi_1632 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dshi_1710 putative monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D Dshi_3987 hypothetical protein K23504 SERAC1; protein SERAC1 D Dshi_2650 conserved hypothetical protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D Dshi_2476 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_0507 MRP-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_3271 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dshi_1141 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dshi_1143 ctaG; cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Dshi_1512 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Dshi_0328 yidC; preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dshi_1145 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein D Dshi_3956 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Dshi_3960 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Dshi_3618 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Dshi_3622 senC; electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Dshi_3431 senC; regulatory protein SenC K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:dsh02000] D Dshi_1765 putative multidrug export ATP-binding/permease protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Dshi_3490 ATPase K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Dshi_0852 msbA; lipid A ABC exporter family K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Dshi_3548 ATPase K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Dshi_1991 putative multidrug export ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Dshi_3491 ATPase K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Dshi_2501 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Dshi_0139 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Dshi_1714 ABC-transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D Dshi_3481 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D Dshi_2540 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein D Dshi_3482 modB; molybdenum transport system permease protein modB K02018 modB; molybdate transport system permease protein D Dshi_3483 modC; molybdenum import ATP-binding protein modC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Dshi_0628 basic organic compound ABC-transporter K05772 tupA; tungstate transport system substrate-binding protein D Dshi_0626 basic organic compound ABC-transporter K05773 tupB; tungstate transport system permease protein D Dshi_0627 basic organic compound ABC-transporter K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dshi_1663 periplasmic binding protein-like II K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Dshi_1664 putative ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D Dshi_1665 ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Dshi_2021 putative binding protein component of ABC iron transporter K02012 afuA; iron(III) transport system substrate-binding protein D Dshi_3126 putative periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Dshi_2023 putative ABC transporter permease component K02011 afuB; iron(III) transport system permease protein D Dshi_1341 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Dshi_2325 putative periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dshi_2123 hypothetical protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dshi_1598 inner membrane ABC-transporter permease protein K11070 potC; spermidine/putrescine transport system permease protein D Dshi_1054 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Dshi_2121 putative spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein D Dshi_1599 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein D Dshi_2122 putative spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein D Dshi_2120 potA2; spermidine/putrescine import ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1597 potA1; spermidine/putrescine import ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1055 ABC transporter related K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dshi_1052 spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Dshi_1438 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dshi_1436 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Dshi_1437 glycine betaine/L-proline ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dshi_0909 NMT1/THI5 like domain protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D Dshi_0906 binding-protein-dependent transport systems inner membrane component K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D Dshi_0907 ABC transporter related K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D Dshi_0491 ssuA1; putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_1374 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_1384 permease protein of ABC transporter K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_1453 ssuA2; putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_1941 NMT1/THI5 family protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_2543 putative binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_2671 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_4189 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic component-like protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dshi_0492 ssuC1; sulfonate/nitrate/taurine transport system permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_1372 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_1373 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_1382 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_1452 ssuC2; binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_1939 putative ABC transporter permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_2545 binding-protein-dependent transport system protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_4187 inner-membrane translocator K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_4188 inner-membrane translocator K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dshi_0493 ssuB1; sulfonate/nitrate/taurine transport system ATP-binding K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_1371 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_1383 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_1451 ssuB2; ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_1940 ABC transporter ATP binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_2544 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_2670 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_4164 ATPase K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_4186 ABC transporter, ATPase subunit K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dshi_0971 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1357 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_0546 ugpC2; ABC-type sugar / sn-glycerol-3-phosphate import ATP-binding protein ugpC K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1250 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_3141 ugpC3; sugar ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1416 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1652 putative bacterial solute-binding protein 1 family K10232 aglE; alpha-glucoside transport system substrate-binding protein D Dshi_1651 inner membrane ABC transporter permease protein K10233 aglF; alpha-glucoside transport system permease protein D Dshi_1650 inner membrane ABC transporter permease protein K10234 aglG; alpha-glucoside transport system permease protein D Dshi_1648 malK; maltose/maltodextrin import ATP-binding protein K10235 aglK; alpha-glucoside transport system ATP-binding protein D Dshi_2000 D-xylose-binding periplasmic protein xylF K10543 xylF; D-xylose transport system substrate-binding protein D Dshi_1999 xylH; xylose transport system permease protein K10544 xylH; D-xylose transport system permease protein D Dshi_1998 ABC transporter ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Dshi_0390 rbsB3; D-ribose-binding periplasmic protein precursor K10552 frcB; fructose transport system substrate-binding protein D Dshi_0389 rbsC2; ribose transport system permease protein rbsC K10553 frcC; fructose transport system permease protein D Dshi_0388 rbsA5; ribose import ATP-binding protein rbsA K10554 frcA; fructose transport system ATP-binding protein D Dshi_2434 putative periplasmic binding abc transporter protein K10559 rhaS; rhamnose transport system substrate-binding protein D Dshi_2432 putative binding-protein-dependent transport system permease K10560 rhaP; rhamnose transport system permease protein D Dshi_2431 (monosaccharide) transport system permease protein K10561 rhaQ; rhamnose transport system permease protein D Dshi_2433 rbsA1; ribose import ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1421 ribose ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D Dshi_1424 rbsC1; inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Dshi_1423 rbsB2; inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Dshi_1422 rbsA3; ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Dshi_3127 ugpB2; sugar ABC transporter K17321 glpV; glycerol transport system substrate-binding protein D Dshi_3130 ugpA2; sugar ABC transporter K17322 glpP; glycerol transport system permease protein D Dshi_3131 ugpE1; sugar ABC transporter K17323 glpQ; glycerol transport system permease protein D Dshi_3128 ugpC5; sugar ABC transporter K17324 glpS; glycerol transport system ATP-binding protein D Dshi_3129 ugpC1; sugar ABC transporter K17325 glpT; glycerol transport system ATP-binding protein D Dshi_2014 ugpB1; sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Dshi_2015 ugpA4; sn-glycerol-3-phosphate transport system permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Dshi_2016 ugpE3; sn-glycerol-3-phosphate transport system permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Dshi_2017 ugpC4; sn-glycerol-3-phosphate import ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Dshi_0974 extracellular solute-binding protein family 1 K10227 smoE; polyol transport system substrate-binding protein D Dshi_0973 binding-protein-dependent transport systems inner membrane component K10228 smoF; polyol transport system permease protein D Dshi_0972 binding-protein-dependent transport systems inner membrane component K10229 smoG; polyol transport system permease protein D Dshi_2842 putative lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dshi_1948 putative basic membrane protein K07335 bmpA; basic membrane protein A and related proteins D Dshi_2964 putative basic membrane protein K07335 bmpA; basic membrane protein A and related proteins D Dshi_2844 integral inner-membrane protein K23535 nupB; general nucleoside transport system permease protein D Dshi_1946 permease component of branched-chain amino acid transport system K23535 nupB; general nucleoside transport system permease protein D Dshi_2962 putative ABC type branched chain amino acid transport system K23535 nupB; general nucleoside transport system permease protein D Dshi_2963 putative ABC type branched chain amino acid transport system K23536 nupC; general nucleoside transport system permease protein D Dshi_1945 putative permease component of branched-chain amino acid transport system K23536 nupC; general nucleoside transport system permease protein D Dshi_2846 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Dshi_1947 rbsA4; ribose import ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_2843 rbsA2; ribose import ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_2961 ABC transporter ATP binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dshi_2048 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dshi_1391 mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dshi_2379 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dshi_2050 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dshi_2380 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dshi_2049 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dshi_2047 conserved hypothetical protein K18480 linN; cholesterol transport system auxiliary component D Dshi_0141 ttg2D; toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Dshi_0547 ugpB4; ABC-type sugar / sn-glycerol 3-phosphate transport protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Dshi_3144 ugpB3; sugar ABC transporter, periplasmic sugar-binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Dshi_1248 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Dshi_1353 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Dshi_1413 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Dshi_1247 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Dshi_0548 ugpA1; ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA K02025 ABC.MS.P; multiple sugar transport system permease protein D Dshi_1354 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Dshi_3143 ugpA3; sugar ABC transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D Dshi_1414 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Dshi_1355 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Dshi_0549 ugpE4; ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE K02026 ABC.MS.P1; multiple sugar transport system permease protein D Dshi_1246 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Dshi_3142 ugpE2; sugar ABC transporter K02026 ABC.MS.P1; multiple sugar transport system permease protein D Dshi_1415 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Dshi_1274 periplasmic binding protein/LacI transcriptional regulator K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D Dshi_0531 araF1; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D Dshi_0517 araF2; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D Dshi_1275 monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein D Dshi_0518 araH1; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02057 ABC.SS.P; simple sugar transport system permease protein D Dshi_0528 araH2; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02057 ABC.SS.P; simple sugar transport system permease protein D Dshi_0529 araH3; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02057 ABC.SS.P; simple sugar transport system permease protein D Dshi_1276 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_0530 araG2; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_0519 araG1; ribose/xylose/arabinose/galactoside ABC-type transport system protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dshi_1533 periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_3568 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D Dshi_1534 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D Dshi_1535 pstA; phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein D Dshi_1536 pstB; phosphate import ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dshi_2009 putative phosphonates-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein D Dshi_2011 putative ABC transporter inner membrane component K02042 phnE; phosphonate transport system permease protein D Dshi_2012 putative ABC transporter inner membrane component K02042 phnE; phosphonate transport system permease protein D Dshi_2010 phnC1; phosphonates import ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dshi_0318 bztA; glutamate/glutamine/aspartate/asparagine ABC transporter K09969 aapJ; general L-amino acid transport system substrate-binding protein D Dshi_0319 bztB; glutamate/glutamine/aspartate/asparagine ABC transport system permease K09970 aapQ; general L-amino acid transport system permease protein D Dshi_0320 bztC; glutamate/glutamine/aspartate/asparagine ABC transport system permease K09971 aapM; general L-amino acid transport system permease protein D Dshi_0321 bztD; glutamate/glutamine/aspartate/asparagine ABC transport ATP-binding K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dshi_0862 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1522 putative periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0380 livK; high-affinity branched-chain amino acid transport system periplasmic binding protein livK K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_3724 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1977 periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_1404 branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dshi_0861 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1518 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0376 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1979 putative branched-chain amino acid transport system / permease component K01997 livH; branched-chain amino acid transport system permease protein D Dshi_1403 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_3725 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Dshi_0379 livM; high-affinity branched-chain amino acid transport system permease protein livM K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0860 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1517 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D Dshi_1978 putative branched-chain amino acid transport system / permease component K01998 livM; branched-chain amino acid transport system permease protein D Dshi_3726 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Dshi_0859 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1521 putative high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0375 livG; high-affinity branched-chain amino acid transport ATP-binding protein livG K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1981 putative branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_1401 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_3727 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dshi_0381 livF1; high-affinity branched-chain amino acid transport ATP-binding protein livF K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_0858 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1520 livF2; high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1400 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_1980 putative high-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_3728 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dshi_2695 putative aliphatic amidase expression-regulating protein K11959 urtA; urea transport system substrate-binding protein D Dshi_2696 inner-membrane translocator K11960 urtB; urea transport system permease protein D Dshi_2697 putative high-affinity branched-chain amino acid transport system K11961 urtC; urea transport system permease protein D Dshi_2698 putative high-affinity branched-chain amino acid transport ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D Dshi_2699 putative high-affinity branched-chain amino acid transport ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D Dshi_2222 extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dshi_2662 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dshi_2223 putative amino-acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D Dshi_2224 putative polar amino acid ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D Dshi_2221 putative amino acid ABC transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dshi_0872 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_0877 4-phytase K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_1490 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_1545 putative extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_2595 putative extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3011 ABC transporter related K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3792 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_3552 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dshi_0881 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_1489 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_3793 inner-membrane translocator K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_2598 binding-protein-dependent transport system permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_3010 ABC transporter related K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dshi_0882 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_1488 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_3794 inner-membrane translocator K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_2599 binding-protein-dependent transport system permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_3009 ABC transporter related K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dshi_1487 oligopeptide/dipeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_3796 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_2596 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_3008 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_0884 oligopeptide/dipeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dshi_2597 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dshi_3795 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dshi_0655 oppA; ABC peptide transporter K13893 yejA; microcin C transport system substrate-binding protein D Dshi_0656 oppBC1; ABC peptide transporter K13894 yejB; microcin C transport system permease protein D Dshi_0657 oppBC2; ABC peptide transporter K13895 yejE; microcin C transport system permease protein D Dshi_0658 oppDF; ABC peptide transporter K13896 yejF; microcin C transport system ATP-binding protein D Dshi_0573 hmuT; hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein D Dshi_0572 hmuU; hemin transport system permease protein hmuU K25133 hmuU; heme transport system permease protein D Dshi_0571 hmuV; hemin import ATP-binding protein hmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Dshi_0561 fhuD; ABC-type cobalamin/Fe3+-siderophores transport system protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Dshi_0562 fhuB; ABC-type cobalamin/Fe3+-siderophores transport system protein K02015 ABC.FEV.P; iron complex transport system permease protein D Dshi_0560 fhuC; ABC-type cobalamin/Fe3+-siderophores transport system protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Dshi_1704 putative high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D Dshi_1701 putative high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D Dshi_1702 znuC; zinc import ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dshi_1659 metal ABC transporter substrate-binding lipoprotein K11604 sitA; manganese/iron transport system substrate-binding protein D Dshi_1657 ABC-3 metal transporter K11605 sitC; manganese/iron transport system permease protein D Dshi_1656 ABC-3 metal transporter K11606 sitD; manganese/iron transport system permease protein D Dshi_1658 metal transport system ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D Dshi_2134 putative BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3685 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3688 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dshi_3687 cobalt transport protein K16783 bioN; biotin transport system permease protein D Dshi_3686 ATPase K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Dshi_4148 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Dshi_0584 kpsE; capsule polysaccharide export K10107 kpsE; capsular polysaccharide transport system permease protein D Dshi_4076 capsule polysaccharide export protein K10107 kpsE; capsular polysaccharide transport system permease protein D Dshi_0585 kpsT; capsule polysaccharide export K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Dshi_4077 ATPase K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Dshi_1190 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Dshi_1189 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Dshi_3585 ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Dshi_3197 nosY; nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein D Dshi_3196 nosF; copper transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein D Dshi_0747 lolC; lipoprotein releasing system K09808 lolC_E; lipoprotein-releasing system permease protein D Dshi_0748 lolD; ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Dshi_1853 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C D Dshi_1854 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D Dshi_1855 ccmA; cytochrome c biogenesis ATP-binding export protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Dshi_3055 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dshi_3056 ftsE; ABC transporter related K09812 ftsE; cell division transport system ATP-binding protein D Dshi_0639 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dshi_2615 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dshi_2668 putative ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dshi_0638 ABC-A-subfamily transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dshi_2667 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dshi_2913 ABC transporter ATP binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dshi_0902 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dshi_2679 putative ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D Dshi_3353 predicted permease FtsX K02004 ABC.CD.P; putative ABC transport system permease protein D Dshi_0901 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dshi_2678 ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dshi_3354 predicted ATPase involved in cell division FtsE K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dshi_1627 sufC; ATP-dependent transporter K09013 sufC; Fe-S cluster assembly ATP-binding protein D Dshi_0755 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Dshi_0953 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Dshi_0845 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Dshi_3884 matE; multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump D Dshi_1255 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Dshi_2898 pucC1; pucC K08226 pucC; MFS transporter, BCD family, chlorophyll transporter D Dshi_3529 pucC2; PUCC protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter D Dshi_3539 lhaA; PUCC protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter D Dshi_1006 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D Dshi_0717 multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Dshi_1559 major facilitator superfamily transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Dshi_3337 major facilitator superfamily (MFS) transporter K06902 UMF1; MFS transporter, UMF1 family D Dshi_2062 ptsI; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Dshi_0207 ptsH; phosphotransferase system K02784 ptsH; phosphocarrier protein HPr D Dshi_0208 ptsL; PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dshi_3582 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Dshi_0746 aqpZ; MIP family channel protein K06188 aqpZ; aquaporin Z D Dshi_2729 putative ion transport protein K10716 kch; voltage-gated potassium channel D Dshi_3493 voltage-gated sodium channel K08714 VGSC; voltage-gated sodium channel D Dshi_0144 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family D Dshi_0837 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_3308 gst1; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_1302 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_0054 gst2; glutathione S-transferase like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_2984 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_3279 putative glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Dshi_3116 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_3117 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_0459 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Dshi_0460 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_0461 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_2330 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_2063 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Dshi_0241 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Dshi_1709 mscS; small conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D Dshi_0743 mcsS; MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Dshi_4182 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Dshi_2998 putative mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D Dshi_2770 putative magnesium transporter K06213 mgtE; magnesium transporter D Dshi_3260 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Dshi_3380 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D Dshi_2940 conserved hypothetical protein K02557 motB; chemotaxis protein MotB D Dshi_0569 exbB; MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Dshi_0568 exbD; biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Dshi_1108 tolQ; Tol-Pal system TolQ K03562 tolQ; biopolymer transport protein TolQ D Dshi_1109 tolR; biopolymer transport TolR K03560 tolR; biopolymer transport protein TolR D Dshi_0314 integral membrane protein K06199 crcB; fluoride exporter D Dshi_3672 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dshi_1613 UPF0053 inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dshi_0043 porin K08720 ompU; outer membrane protein OmpU D Dshi_0284 putative outer membrane protein K16079 omp31; outer membrane immunogenic protein D Dshi_1699 hypothetical protein K16079 omp31; outer membrane immunogenic protein D Dshi_3101 OmpA domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Dshi_0122 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Dshi_1590 porin K06076 fadL; long-chain fatty acid transport protein D Dshi_0570 fhuA; ABC-type cobalamin/Fe3+-siderophores transport system protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Dshi_1017 hemB2; TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Dshi_1449 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_2254 putative polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Dshi_2290 hypothetical protein K07267 oprB; porin D Dshi_1499 yaeT; hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D Dshi_2414 conserved hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD D Dshi_3381 hypothetical protein K07278 tamA; translocation and assembly module TamA D Dshi_3382 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Dshi_3586 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Dshi_3587 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D Dshi_1188 ostA; organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Dshi_0056 conserved hypothetical protein K03643 lptE; LPS-assembly lipoprotein D Dshi_1014 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Dshi_3767 cation efflux system protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_3626 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_4043 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_3964 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_3624 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_3962 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D Dshi_3953 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Dshi_3615 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Dshi_0250 efflux transporter K18303 mexK; multidrug efflux pump D Dshi_1162 acriflavin resistance protein K18989 vexF; multidrug efflux pump D Dshi_1638 emrE; efflux-multidrug resistance protein K03297 emrE; small multidrug resistance pump D Dshi_3013 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dshi_2693 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dshi_0579 betT; choline-glycine betaine transporter K05020 opuD; glycine betaine transporter D Dshi_2119 betaine/carnitine/choline transporter family protein K02168 betT; choline/glycine/proline betaine transport protein D Dshi_2524 putative C4-dicarboxylate transporter / malic acid transport protein K03304 tehA; tellurite resistance protein D Dshi_1539 inner membrane protein K07301 yrbG; cation:H+ antiporter D Dshi_0642 Na+/Ca+ antiporter K07301 yrbG; cation:H+ antiporter D Dshi_3670 Na+/Ca+ antiporter K07301 yrbG; cation:H+ antiporter D Dshi_3907 sodium/calcium antiporter K07301 yrbG; cation:H+ antiporter D Dshi_3556 sodium/solute symporter family protein K14393 actP; cation/acetate symporter D Dshi_1261 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Dshi_2140 hypothetical protein K03316 nhaP; Na+:H+ antiporter D Dshi_2108 hypothetical protein K03316 nhaP; Na+:H+ antiporter D Dshi_3674 sodium/hydrogen exchanger family K03316 nhaP; Na+:H+ antiporter D Dshi_0789 kefC; potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D Dshi_1568 trkH; potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D Dshi_2406 trkG; Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D Dshi_3914 trkH; potassium uptake system protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D Dshi_1569 trkA; Trk system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D Dshi_3913 trkA; potassium uptake system protein TrkA K03499 trkA; trk/ktr system potassium uptake protein D Dshi_2412 putative chloride channel protein K03281 clcA; chloride channel protein, CIC family D Dshi_2332 putative chromate transport protein K07240 chrA; chromate transporter D Dshi_2515 putative sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Dshi_0635 putative sulfate permease with cyclic nucleotide-binding domain K03321 TC.SULP; sulfate permease, SulP family D Dshi_2067 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Dshi_1089 TRAP dicarboxylate transporter-DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Dshi_4203 dctP2; TRAP transporter - DctP subunit precursor K11688 dctP; C4-dicarboxylate-binding protein DctP D Dshi_1090 tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dshi_1833 putative TRAP transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dshi_1037 TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_1091 TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_0605 dctM5; TRAP dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_0801 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_2033 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_3001 dctM2; TRAP transporter - DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_3159 TRAP transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_4205 dctM2; TRAP transporter - DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Dshi_2753 TRAP dicarboxylate transporter K21393 yiaN; TRAP-type transport system large permease protein D Dshi_2754 tripartite ATP-independent periplasmic transporter K21394 yiaM; TRAP-type transport system small permease protein D Dshi_4192 dctQ1; TRAP transporter - DctQ subunit K21394 yiaM; TRAP-type transport system small permease protein D Dshi_3327 dctQ1; TRAP transporter - DctQ subunit K21394 yiaM; TRAP-type transport system small permease protein D Dshi_0958 TRAP dicarboxylate transporter K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_0697 dctP1; TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_2752 TRAP dicarboxylate transporter K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_1043 TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_0803 TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_3711 dctP; TRAP transporter - DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_3003 dctP4; TRAP transporter - DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_3157 TRAP transporter - DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_4191 dctP1; TRAP transporter - DctP subunit (precursor) K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_1834 putative sialic acid-binding periplasmic protein K21395 yiaO; TRAP-type transport system periplasmic protein D Dshi_0543 Na+/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter D Dshi_1822 putative arsenic resistance protein K03325 ACR3; arsenite transporter D Dshi_3805 phaA; NADH dehydrogenase (quinone) K05559 phaA; multicomponent K+:H+ antiporter subunit A D Dshi_3806 phaC; NADH-ubiquinone oxidoreductase chain 4L K05560 phaC; multicomponent K+:H+ antiporter subunit C D Dshi_3807 phaD; NADH dehydrogenase (quinone) K05561 phaD; multicomponent K+:H+ antiporter subunit D D Dshi_3808 phaE; cation antiporter subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D Dshi_3809 phaF; multisubunit cation/H+ antiporter K05563 phaF; multicomponent K+:H+ antiporter subunit F D Dshi_3810 phaG; multisubunit cation/H+ antiporter K05564 phaG; multicomponent K+:H+ antiporter subunit G D Dshi_0728 mnhA; quinone dependent NADH dehydrogenase K05565 mnhA; multicomponent Na+:H+ antiporter subunit A D Dshi_0729 mnhB; Na+/H+ antiporter MnhB subunit-related protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D Dshi_0730 mnhC; NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D Dshi_0731 mnhD; quinone dependent NADH dehydrogenase K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Dshi_0732 mnhE; cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Dshi_0733 mnhF; multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Dshi_0734 mnhG; monovalent cation/proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Dshi_2834 putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D Dshi_0109 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins D Dshi_0918 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins D Dshi_0069 auxin efflux carrier K24180 mleP; malate permease and related proteins D Dshi_0712 lysE; lysine exporter protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D Dshi_3107 rhtB; homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D Dshi_2358 putative lysine exporter protein K05834 rhtB; homoserine/homoserine lactone efflux protein D Dshi_1792 putative LysE type translocator K05835 rhtC; threonine efflux protein D Dshi_2845 conserved hypothetical protein K05835 rhtC; threonine efflux protein D Dshi_1791 putative LysE type translocator K05835 rhtC; threonine efflux protein D Dshi_3078 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Dshi_3079 AzlD branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Dshi_4195 hypothetical membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_2448 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_3121 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_1218 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_2439 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_4220 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Dshi_3122 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_1219 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_2440 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_4196 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_4219 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Dshi_3123 uncharacterized protein conserved in bacteria K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_1220 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_2450 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_2441 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_4197 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Dshi_3340 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Dshi_1636 conserved hypothetical protein K22736 VIT; vacuolar iron transporter family protein D Dshi_0107 ferritin-like protein K22737 mbfA; erythrin-vacuolar iron transport family protein D Dshi_1348 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Dshi_2424 putative cell division protein ftsW K03588 ftsW; cell division protein FtsW D Dshi_0753 nicO; high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D Dshi_0567 TonB family protein K03832 tonB; periplasmic protein TonB D Dshi_1112 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D Dshi_1128 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein D Dshi_1111 tolB; Tol-Pal system beta propeller repeat TolB K03641 tolB; TolB protein D Dshi_3944 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Dshi_2809 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D Dshi_3606 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Dshi_3286 ccdA; cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D Dshi_3779 dsbD; cytochrome c biogenesis protein K08344 scsB; suppressor for copper-sensitivity B D Dshi_4055 dsbD; cytochrome c biogenesis protein DsbD K08344 scsB; suppressor for copper-sensitivity B D Dshi_3407 dsbD; thiol:disulfide interchange protein DsbD K08344 scsB; suppressor for copper-sensitivity B D Dshi_2278 dmsA1; dimethyl sulfoxide reductase precursor K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Dshi_0138 hlyD; type I secretion membrane fusion protein K12537 hasE; membrane fusion protein, type I secretion system D Dshi_0928 conserved hypothetical protein K07798 cusB; membrane fusion protein, copper/silver efflux system D Dshi_2502 secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D Dshi_1263 efflux transporter K18302 mexJ; membrane fusion protein, multidrug efflux system D Dshi_0251 efflux transporter K21137 triB; membrane fusion protein, multidrug efflux system D Dshi_1163 efflux transporter K18990 vexE; membrane fusion protein, multidrug efflux system D Dshi_3037 efflux transporter K07799 mdtA; membrane fusion protein, multidrug efflux system D Dshi_3389 ATPase involved in chromosome partitioning K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dshi_3388 polysaccharide chain length determinant protein K25590 epsF; protein tyrosine kinase modulator D Dshi_3510 tspO; tryptophan rich sensory protein K05770 TSPO; translocator protein D Dshi_2195 hypothetical protein K16348 ecnB; entericidin B D Dshi_4051 ccmF; cytochrome c biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Dshi_3775 ccmF; cytochrome c biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Dshi_3411 cycK; cytochrome c-type biogenesis protein CycK K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Dshi_3897 MgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Dshi_2684 putative transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Dshi_3205 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Dshi_0808 mipA; MltA-interacting MipA family protein K07274 mipA; MipA family protein D Dshi_4161 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:dsh02044] D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein D Dshi_0139 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Dshi_0138 hlyD; type I secretion membrane fusion protein K12537 hasE; membrane fusion protein, type I secretion system D Dshi_2501 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Dshi_2502 secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D Dshi_3387 exeA; Type II secretory pathway K02450 gspA; general secretion pathway protein A D Dshi_1121 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dshi_1130 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dshi_1129 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dshi_1127 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dshi_1126 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dshi_1125 type II secretion system protein K12510 tadB; tight adherence protein B D Dshi_1124 type II secretion system protein K12511 tadC; tight adherence protein C D Dshi_3335 protein of unknown function YGGT K02221 yggT; YggT family protein D Dshi_1804 putative competence protein K02238 comEC; competence protein ComEC D Dshi_3258 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dshi_3256 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dshi_3264 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dshi_3246 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dshi_3266 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dshi_3267 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dshi_3250 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dshi_3257 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dshi_3639 virB1; conjugal transfer (TrbC) or type IV secretory pathway (VirB2) protein K03197 virB2; type IV secretion system protein VirB2 D Dshi_3974 virB1; conjugal transfer (TrbC) or type IV secretory pathway (VirB2) protein K03197 virB2; type IV secretion system protein VirB2 D Dshi_3640 virB2; type IV secretory pathway VirB3 family protein K03198 virB3; type IV secretion system protein VirB3 D Dshi_3975 virB2; type IV secretory pathway VirB3 family protein K03198 virB3; type IV secretion system protein VirB3 D Dshi_3641 virB3; CagE TrbE VirB component of type IV transporter system K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D Dshi_3976 virB3; CagE TrbE VirB component of type IV transporter system K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D Dshi_3644 virB4; type IV secretion system protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D Dshi_3979 virB4; type IV secretion system protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D Dshi_3985 virB9; TrbL/VirB6 plasmid conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6 D Dshi_3651 virB9; TrbL/VirB6 plasmid conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6 D Dshi_3645 virB5; VirB8 family protein K03203 virB8; type IV secretion system protein VirB8 D Dshi_3980 virB5; VirB8 family protein K03203 virB8; type IV secretion system protein VirB8 D Dshi_3646 virB6; conjugal transfer protein TrbG/VirB9/CagX K03204 virB9; type IV secretion system protein VirB9 D Dshi_3981 virB6; conjugal transfer protein TrbG/VirB9/CagX K03204 virB9; type IV secretion system protein VirB9 D Dshi_3647 virB7; conjugation TrbI family protein K03195 virB10; type IV secretion system protein VirB10 D Dshi_3982 virB7; conjugation TrbI family protein K03195 virB10; type IV secretion system protein VirB10 D Dshi_3648 virB8; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D Dshi_3983 virB8; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D Dshi_3656 virD2; relaxase/mobilization nuclease family protein VirD2 K18434 virD2; type IV secretion system T-DNA border endonuclease VirD2 D Dshi_3989 virD2; relaxase/mobilization nuclease family protein VirD2 K18434 virD2; type IV secretion system T-DNA border endonuclease VirD2 D Dshi_3655 virD1; TraG family protein/type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dshi_3988 virD1; TraG family protein/type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dshi_0900 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Dshi_3567 secA; preprotein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dshi_3447 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Dshi_1859 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dshi_0258 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dshi_1858 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D Dshi_0249 efflux transporter K03074 secF; preprotein translocase subunit SecF D Dshi_2743 putative preprotein translocase K03075 secG; preprotein translocase subunit SecG D Dshi_1065 hypothetical protein K03075 secG; preprotein translocase subunit SecG D Dshi_0305 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dshi_0353 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dshi_2725 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D Dshi_1860 yajC; preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D Dshi_0328 yidC; preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dshi_1343 Sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dshi_1344 tatB; twin-arginine translocation protein K03117 tatB; sec-independent protein translocase protein TatB D Dshi_1345 tatC; sec-independent protein translocase K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:dsh02042] D Dshi_3672 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dshi_1613 UPF0053 inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dshi_2910 hypothetical protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:dsh02022] D Dshi_1532 phoR; histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dshi_1538 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Dshi_1921 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Dshi_3299 petR; DNA-binding response regulator PetR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Dshi_2280 signal transduction histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Dshi_2279 two component transcriptional regulator K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Dshi_0824 histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D Dshi_3125 qseC; sensor protein QseC K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Dshi_3124 qseB; transcriptional regulatory protein QseB K07774 tctD; two-component system, OmpR family, response regulator TctD D Dshi_0449 two component transcriptional regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D Dshi_0211 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Dshi_0212 two component transcriptional regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D Dshi_3772 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator D Dshi_4048 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Dshi_2497 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator D Dshi_2631 putative response regulator K02483 K02483; two-component system, OmpR family, response regulator D Dshi_1406 response regulator receiver protein K02483 K02483; two-component system, OmpR family, response regulator D Dshi_2565 response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Dshi_2345 two component transcriptional regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Dshi_2344 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Dshi_1575 ntrB; nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Dshi_1574 ntrC; nitrogen assimilation regulator receiver protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Dshi_1573 ntrY; histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dshi_1572 ntrX; nitrogen assimilation regulator receiver protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Dshi_1197 dctB; integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1080 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Dshi_1196 dctD; two component, sigma54 specific, transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Dshi_2820 response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D Dshi_1644 histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_1893 LOV-regulator, Blue-light sensing K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Dshi_1508 ctrA; cell cycle transcriptional regulator ctrA K13584 ctrA; two-component system, cell cycle response regulator CtrA D Dshi_2567 multi-sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D Dshi_3432 regB; sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Dshi_3430 regA; photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA D Dshi_0467 sensor histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D Dshi_3834 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D Dshi_1662 periplasmic binding protein-like II K22067 nasS; two-component system, oxyanion-binding sensor D Dshi_1661 transcription antitermination regulatory protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:dsh02035] D Dshi_3246 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dshi_3267 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dshi_3250 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dshi_3257 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dshi_3258 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dshi_3256 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dshi_1845 putative flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG D Dshi_1409 hypothetical protein K02416 fliM; flagellar motor switch protein FliM D Dshi_3266 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dshi_3264 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dshi_3376 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D Dshi_3253 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Dshi_3254 flgH; flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Dshi_3263 fliL2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dshi_3255 fliL1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dshi_3249 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dshi_3247 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dshi_3248 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dshi_3365 flgD; flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D Dshi_3251 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Dshi_3252 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Dshi_3363 putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Dshi_3379 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D Dshi_3378 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dshi_3377 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D Dshi_3361 fliC; flagellin K02406 fliC; flagellin D Dshi_3260 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Dshi_3380 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D Dshi_2940 conserved hypothetical protein K02557 motB; chemotaxis protein MotB D Dshi_3359 flbT; flagellum biosynthesis repressor protein FlbT K06601 flbT; flagellar biosynthesis repressor protein FlbT D Dshi_1121 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dshi_1130 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dshi_1129 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dshi_1127 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dshi_1126 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:dsh04812] D Dshi_0595 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dshi_2416 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D Dshi_2417 ftsA; cell division protein K03590 ftsA; cell division protein FtsA D Dshi_0337 parA2; ATPases involved in chromosome partitioning-like protein K03496 parA; chromosome partitioning protein D Dshi_3457 parA1; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_2216 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Dshi_4023 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_4104 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_3745 repA; replication protein A K03496 parA; chromosome partitioning protein D Dshi_3855 parA; partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_4213 parA; partitioning protein ParA K03496 parA; chromosome partitioning protein D Dshi_3458 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3847 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4022 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4103 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3733 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3744 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_4212 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dshi_3856 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:dsh04147] D Dshi_2156 fda; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dshi_2145 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dshi_1740 gap2; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_1742 gap1; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_2685 gap3; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dshi_2155 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dshi_0228 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dshi_0578 rDP; peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Dshi_2522 putative peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Dshi_2919 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dshi_3571 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Dshi_1682 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dshi_1646 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dshi_0223 tufA2; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0274 tufA1; translation elongation factor Tu K02358 tuf; elongation factor Tu D Dshi_0679 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Dshi_1000 fadD4; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0373 fadD3; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dshi_0757 selenium-binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] D Dshi_3066 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3331 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0074 thlA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_0836 fadA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dshi_3426 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dshi_0306 adk2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_3554 adk1; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dshi_2074 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dshi_3062 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dshi_3472 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dshi_1370 dht; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dshi_3811 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Dshi_3420 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dshi_1839 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_2226 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dshi_1563 hemB1; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dshi_0134 pcd; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Dshi_3318 serA1; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dshi_0358 purH; bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dshi_1811 lpdV; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_1966 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_2886 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dshi_0216 eftA; electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Dshi_1684 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Dshi_2078 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:dsh02048] D Dshi_0401 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Dshi_3220 cas1; cas1: CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Dshi_0402 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Dshi_3221 cas2; cas2: CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Dshi_3214 cas3; cas3: CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Dshi_3215 cse1; CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D Dshi_3216 hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB D Dshi_3217 cse3; CRISPR-associated protein K19124 casC; CRISPR system Cascade subunit CasC D Dshi_3218 cas5; CRISPR-associated protein Cas5 family K19125 casD; CRISPR system Cascade subunit CasD D Dshi_3219 cse2; CRISPR-associated protein K19126 casE; CRISPR system Cascade subunit CasE D Dshi_0400 CRISPR-associated protein K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-] D Dshi_0024 dam; adenine-specific methyltransferase K13581 ccrM; modification methylase [EC:2.1.1.72] D Dshi_1457 type III restriction protein res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dshi_2101 hypothetical protein K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dshi_2102 hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dshi_2105 hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dshi_1708 hypothetical protein K07448 mrr; restriction system protein D Dshi_3665 transcriptional modulator of MazE/toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Dshi_4024 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE D Dshi_4011 conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-] D Dshi_3729 conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-] D Dshi_3730 transcriptional regulator K19156 prlF; antitoxin PrlF D Dshi_4012 transcriptional regulator K19156 prlF; antitoxin PrlF D Dshi_3750 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4 D Dshi_4087 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Dshi_3749 addiction module antidote protein K07746 parD1_3_4; antitoxin ParD1/3/4 D Dshi_4086 hypothetical antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4 D Dshi_4113 death-on-curing family protein K07341 doc; death on curing protein D Dshi_4210 plasmid stabilization protein, PilT domain protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Dshi_4211 plasmid stabilization protein K21495 fitA; antitoxin FitA D Dshi_2416 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D Dshi_0595 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dshi_0221 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Dshi_0749 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Dshi_2748 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_1805 gltX2; glutamyl-tRNA synthase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dshi_0764 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Dshi_1632 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:dsh04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:dsh04090] C 01504 Antimicrobial resistance genes [BR:dsh01504] D Dshi_0797 GCN5-related N-acetyltransferase K00663 aacA; aminoglycoside 6'-N-acetyltransferase [EC:2.3.1.82] D Dshi_1006 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D Dshi_3133 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Dshi_3149 ddpX; putative D-alanyl-d-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dshi_1263 efflux transporter K18302 mexJ; membrane fusion protein, multidrug efflux system D Dshi_0250 efflux transporter K18303 mexK; multidrug efflux pump D Dshi_3790 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_1260 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_4066 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Dshi_2098 putative outer membrane protein tolC K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:dsh00537] D Dshi_0578 rDP; peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:dsh03200] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:dsh03100] D Dshi_6015 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6008 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dshi_6039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dshi_6038 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dshi_6033 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dshi_6034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dshi_6040 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dshi_6012 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dshi_6041 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dshi_6044 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dshi_6018 tRNA-His K14226 tRNA-His; tRNA His D Dshi_6007 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dshi_6014 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dshi_6024 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6050 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dshi_6048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dshi_6046 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6011 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6037 tRNA-Met K14230 tRNA-Met; tRNA Met D Dshi_6022 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dshi_6001 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dshi_6020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dshi_6003 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dshi_6002 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dshi_6045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dshi_6035 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_6031 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_6005 tRNA-Val K14237 tRNA-Val; tRNA Val D Dshi_6006 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6013 16SrRNA K01977 16SrRNA; 16S ribosomal RNA D Dshi_6009 23SrRNA K01980 23SrRNA; 23S ribosomal RNA D Dshi_6016 23SrRNA K01980 23SrRNA; 23S ribosomal RNA D Dshi_6010 5SrRNA K01985 5SrRNA; 5S ribosomal RNA D Dshi_6017 5SrRNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Dshi_2825 hypothetical protein K27497 K27497; carnitine 3-dehydrogenase / betainyl-CoA thioesterase [EC:1.1.1.108 3.1.2.33] D Dshi_2034 hisD2; histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D Dshi_2242 hisD3; histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D Dshi_3049 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D Dshi_4221 NAD dependent oxidoreductase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411] D Dshi_3394 oxidoreductase domain protein K23244 apsD; D-apiose dehydrogenase [EC:1.1.1.420] D Dshi_2756 aldo/keto reductase K26057 smoB; 6-dehydroglucose reductase [EC:1.1.1.432] D Dshi_0534 pdhA2; pyruvate dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D Dshi_0535 pdhB1; pyruvate dehydrogenase E1 component subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D Dshi_1523 yliI; soluble aldose sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Dshi_1872 putative soluble aldose sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Dshi_0539 oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D Dshi_1254 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Dshi_1211 coxS; (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dshi_2660 putative carbon monoxide dehydrogenase K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dshi_4201 coxS; carbon monoxide dehydrogenase small chain CoxS K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dshi_4200 coxM; carbon monoxide dehydrogenase medium chain CoxM K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D Dshi_2658 putative carbon monoxide dehydrogenase K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D Dshi_1210 coxM; molybdopterin dehydrogenase FAD-binding K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D Dshi_1212 coxL2; carbon-monoxide dehydrogenase, large subunit K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D Dshi_2086 coxL3; carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D Dshi_2659 coxL1; carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D Dshi_1040 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D Dshi_1762 putative indolepyruvate oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D Dshi_0125 fadH; NADPH:2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Dshi_0452 pqqC; coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D Dshi_0864 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Dshi_0865 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Dshi_3075 ydiS; electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Dshi_2776 putative alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Dshi_0248 quinone oxidoreductase putative PIG3 K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Dshi_0354 azoR1; FMN-dependent NADH-azoreductase 1 K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Dshi_3468 msrA1; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Dshi_1099 msrA2; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Dshi_1706 msrB2; peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Dshi_2709 msrB1; peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Dshi_1932 putative glutathione S-transferase family protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Dshi_0240 gst3; glutathione S-transferase domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Dshi_2407 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Dshi_0169 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Dshi_0623 yedY; oxidoreductase molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Dshi_2005 putative cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Dshi_2749 putative cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Dshi_2655 ccpA; cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Dshi_1178 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Dshi_2143 pirin like protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Dshi_2757 ssuD; alkanesulfonate monooxygenase K26058 smoC; sulfoquinovose monooxygenase [EC:1.14.14.181] D Dshi_1150 ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Dshi_0846 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Dshi_0454 pqqE; coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D Dshi_2099 putative Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Dshi_2137 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Dshi_2317 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Dshi_2577 putative RNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Dshi_3951 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Dshi_3613 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Dshi_1013 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Dshi_1473 phospholipid/glycerol acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D Dshi_2918 hypothetical protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D Dshi_0148 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D Dshi_1616 beta ketoacyl synthase K14660 nodE; nodulation protein E [EC:2.3.1.-] D Dshi_0736 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Dshi_1394 aat; leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Dshi_1082 ate; arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Dshi_1707 putative acyl-CoA N-acyltransferases (Nat) superfamily protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D Dshi_1472 phospholipid/glycerol acyltransferase K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D Dshi_3832 glucosylglycerol-phosphate synthase K03692 E2.4.1.213; glucosylglycerol-phosphate synthase [EC:2.4.1.213] D Dshi_3602 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dshi_3940 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dshi_2649 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dshi_3168 apbE1; ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Dshi_3199 nosX; putative nitrous-oxide reductase protein NosX K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Dshi_0685 apbE2; ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Dshi_1552 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D Dshi_1775 putative glutamate--ammonia ligase adenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Dshi_1157 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Dshi_1681 putative Thioesterase/thiol ester dehydrase-isomerase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Dshi_1107 Pol-Pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Dshi_0322 putative phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Dshi_0920 hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Dshi_0820 alpha/beta hydrolase fold protein K01175 ybfF; esterase [EC:3.1.-.-] D Dshi_1356 conserved hypothetical protein K25649 mgh; mannosylglycerate hydrolase [EC:3.2.1.170] D Dshi_0669 dacC2; D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D Dshi_2783 hypothetical protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dshi_0179 def1; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Dshi_0180 def2; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Dshi_3506 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Dshi_2773 amidohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D Dshi_0720 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dshi_0456 moxR; MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Dshi_3113 putative MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Dshi_2906 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Dshi_1553 AraD-like aldolase/epimerase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D Dshi_0889 alanine racemase domain protein K18425 dhaa; 3-hydroxy-D-aspartate aldolase [EC:4.1.3.41] D Dshi_1837 yjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Dshi_0533 xylose isomerase domain protein TIM barrel K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31] D Dshi_2430 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D Dshi_2153 putative peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Dshi_2154 putative peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Dshi_1554 putative isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D Dshi_1867 glnT; glutamine synthetase 3 K01949 gmaS; glutamate---methylamine ligase [EC:6.3.4.12] D Dshi_0667 fixI; nitrogen fixation protein fixI K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Dshi_3609 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Dshi_3947 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Dshi_0118 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Dshi_2281 periplasmic binding protein K11930 torT; periplasmic protein TorT D Dshi_2054 histone deacetylase family protein K04768 acuC; acetoin utilization protein AcuC D Dshi_1244 ilvD2; dihydroxy-acid dehydratase K22216 ilvD1; dehydratase ilvD1 C 99982 Energy metabolism D Dshi_3282 fdhD; putative formate dehydrogenase accessory protein FdhD K02379 fdhD; FdhD protein D Dshi_2731 ferredoxin-6 K04755 fdx; ferredoxin, 2Fe-2S D Dshi_0785 fdxA; 4Fe-4S ferredoxin iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Dshi_3186 norD; nitric oxide reductase D protein K02448 norD; nitric oxide reductase NorD protein D Dshi_3187 norE; nitric oxide reductase E protein K02164 norE; nitric oxide reductase NorE protein D Dshi_3185 norQ; nitric oxide reductase Q protein K04748 norQ; nitric oxide reductase NorQ protein D Dshi_3166 napD; periplasmic nitrate reductase NapD K02570 napD; periplasmic nitrate reductase NapD D Dshi_3167 napF; ferredoxin-type protein napF K02572 napF; ferredoxin-type protein NapF D Dshi_3161 napC; cytochrome c-type protein NapC K02569 napC; cytochrome c-type protein NapC D Dshi_3164 napG; ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG D Dshi_3163 napH; ferredoxin-type protein NapH K02574 napH; ferredoxin-type protein NapH D Dshi_0217 eftB; electron transfer flavoprotein beta subunit K03521 fixA; electron transfer flavoprotein beta subunit D Dshi_3178 nirC; putative cytochrome c K19344 nirC; cytochrome c55X D Dshi_3177 nirF; cytochrome cd1 K19345 nirF; protein NirF C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Dshi_2628 conserved hypothetical protein K06203 cysZ; CysZ protein D Dshi_0042 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Dshi_1028 conserved hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D Dshi_4166 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D Dshi_0160 cobW; cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D Dshi_3418 hypothetical protein K02498 hemY; HemY protein D Dshi_3173 nirJ; putative nitrite reductase heme biosynthesis J protein K24868 nirJ; heme d1 biosynthesis protein D Dshi_3367 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Dshi_3504 bchO; magnesium-chelatase 30 kDa subunit K06049 bchO; magnesium chelatase accessory protein D Dshi_0247 conserved hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9 D Dshi_1580 putative polyketide cyclase / dehydrase K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism D Dshi_1953 putative hydrolase K03932 lpqC; polyhydroxybutyrate depolymerase D Dshi_0713 poly(3-hydroxybutyrate) depolymerase-like protein K03932 lpqC; polyhydroxybutyrate depolymerase D Dshi_0154 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Dshi_0637 glyoxalase/bleomycin resistance protein/dioxygenase K15975 K15975; glyoxalase family protein D Dshi_0771 DoxX family protein K15977 K15977; putative oxidoreductase D Dshi_1688 putative phospholipase / carboxylesterase K06999 K06999; phospholipase/carboxylesterase D Dshi_0636 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Dshi_1788 putative cold shock protein K03704 cspA; cold shock protein D Dshi_0009 csp2; cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Dshi_0769 csp1; cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Dshi_2219 putative cold-shock DNA-binding domain protein K03704 cspA; cold shock protein C 99974 Translation D Dshi_2587 hypothetical protein K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D Dshi_2190 tig; trigger factor K03545 tig; trigger factor D Dshi_0624 yedZ; putative sulfite oxidase subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Dshi_2363 ureE; urease accessory domain protein K03187 ureE; urease accessory protein D Dshi_2362 ureF; putative urease accessory protein K03188 ureF; urease accessory protein D Dshi_2360 ureG; urease accessory protein K03189 ureG; urease accessory protein D Dshi_2370 ureD; urease accessory protein K03190 ureD; urease accessory protein D Dshi_3799 hupE; hydrogenase/urease accessory protein K03192 ureJ; urease accessory protein D Dshi_0147 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D Dshi_2828 conserved hypothetical protein K07391 comM; magnesium chelatase family protein D Dshi_3245 putative proteasome-type protease K07395 K07395; putative proteasome-type protease D Dshi_1215 coxF; protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Dshi_2351 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor D Dshi_2960 xdhC; putative xanthine dehydrogenase accessory protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D Dshi_3569 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D Dshi_0364 rmuC; protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Dshi_2830 conserved hypothetical protein K07460 yraN; putative endonuclease D Dshi_1138 DNA protecting protein DprA K04096 smf; DNA processing protein D Dshi_0313 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Dshi_3882 transposase K18320 IS15; transposase, IS6 family D Dshi_4074 transposase IS3/IS911 family protein K07483 K07483; transposase D Dshi_1455 transposase K07483 K07483; transposase D Dshi_3666 hypothetical protein K07483 K07483; transposase D Dshi_3706 transposase IS3/IS911 family protein K07483 K07483; transposase D Dshi_3737 transposase IS3/IS911 family protein K07483 K07483; transposase D Dshi_3919 transposase IS3/IS911 family protein K07483 K07483; transposase D Dshi_3734 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dshi_3738 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dshi_3759 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dshi_4035 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dshi_4092 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dshi_0464 integrase catalytic region K07497 K07497; putative transposase D Dshi_4082 integrase K07497 K07497; putative transposase D Dshi_0876 integrase catalytic region K07497 K07497; putative transposase D Dshi_0875 transposase IS3/IS911 family protein K07497 K07497; putative transposase D Dshi_3875 integrase catalytic region K07497 K07497; putative transposase D Dshi_2507 transposase K07497 K07497; putative transposase D Dshi_3679 integrase K07497 K07497; putative transposase D Dshi_1456 integrase catalytic region K07497 K07497; putative transposase D Dshi_1914 putative insertion element / transposase K07497 K07497; putative transposase D Dshi_2103 putative transposase K07497 K07497; putative transposase D Dshi_0403 insertion element ISR1 uncharacterized 10 kDa protein A3 K07497 K07497; putative transposase D Dshi_0463 transposase IS3/IS911 family protein K07497 K07497; putative transposase D Dshi_0927 transposase IS3/IS911 family protein K07497 K07497; putative transposase D Dshi_0934 transposase IS3/IS911 family protein K07497 K07497; putative transposase D Dshi_0100 putative transposase K07497 K07497; putative transposase D Dshi_4090 transposase IS3/IS911 family protein K07497 K07497; putative transposase D Dshi_3356 insertion element ISR1 uncharacterized 10 kDa protein A3 K07497 K07497; putative transposase D Dshi_2510 transposase K07497 K07497; putative transposase D Dshi_2508 integrase K07497 K07497; putative transposase D Dshi_2104 putative integrase K07497 K07497; putative transposase D Dshi_1913 putative insertion element K07497 K07497; putative transposase D Dshi_0926 integrase catalytic region K07497 K07497; putative transposase D Dshi_0404 integrase catalytic region K07497 K07497; putative transposase D Dshi_2509 integrase K07497 K07497; putative transposase D Dshi_3705 integrase catalytic region K07497 K07497; putative transposase D Dshi_3736 integrase K07497 K07497; putative transposase D Dshi_3739 integrase K07497 K07497; putative transposase D Dshi_3921 integrase K07497 K07497; putative transposase D Dshi_4089 integrase K07497 K07497; putative transposase D Dshi_3357 integrase catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Dshi_0649 conserved hypothetical protein DUF149 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Dshi_3922 putative transport protein K21990 yfdC; formate-nitrite transporter family protein D Dshi_0369 putative sodium:galactoside symporter family protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Dshi_0917 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Dshi_0542 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Dshi_3906 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Dshi_3904 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Dshi_1808 putative sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Dshi_0999 bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family C 99978 Cell growth D Dshi_2723 intracellular septation protein A K06190 ispZ; intracellular septation protein D Dshi_1026 intracellular septation protein A K06190 ispZ; intracellular septation protein D Dshi_2304 putative regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling D Dshi_0396 recombinase K06400 spoIVCA; site-specific DNA recombinase D Dshi_0090 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D Dshi_1352 TfoX domain protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D Dshi_0929 UspA domain protein K14055 uspE; universal stress protein E D Dshi_2040 putative universal stress protein K14061 uspF; universal stress protein F D Dshi_2213 putative UspA domain protein K14061 uspF; universal stress protein F D Dshi_0019 GTP-binding protein TypA K06207 typA; GTP-binding protein D Dshi_0365 chrR1; anti-ECFsigma factor K07167 chrR; putative transcriptional regulator D Dshi_1016 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Dshi_3557 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein C 99992 Structural proteins D Dshi_0140 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Dshi_2253 putative capsule polysaccharide export protein K07265 kpsS; capsular polysaccharide export protein D Dshi_2255 putative capsule polysaccharide export protein K07266 kpsC; capsular polysaccharide export protein D Dshi_2452 conserved hypothetical protein K07273 acm; lysozyme D Dshi_1299 OmpW family protein K07275 ompW; outer membrane protein D Dshi_0614 conserved hypothetical protein K07340 ybbJ; inner membrane protein D Dshi_3908 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA D Dshi_1758 ccmE; cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Dshi_4053 ccmH; cytochrome c biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_4054 ccmI; cytochrome c biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_3777 ccmH; cytochrome c biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_3778 ccmI; cytochrome c biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_3408 cycH; cytochrome c-type biogenesis protein CycH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_3409 cycL; cytochrome c-type biogenesis protein CycL K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Dshi_0084 conserved hypothetical protein K21908 hdeD; membrane protein HdeD C 99994 Others D Dshi_1537 phoU; phosphate transport system protein K02039 phoU; phosphate transport system protein D Dshi_4171 mdoG; periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Dshi_2619 cutA; putative divalent-cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Dshi_3195 nosD; nitrous oxide maturation protein K07218 nosD; nitrous oxidase accessory protein D Dshi_0629 periplasmic substrate-binding protein K07219 K07219; putative molybdopterin biosynthesis protein D Dshi_4157 flavin-containing monooxygenase, putative K07222 K07222; putative flavoprotein involved in K+ transport D Dshi_0574 hmuS; hemin transport protein hmuS K07225 hmuS; putative hemin transport protein D Dshi_0563 irpA; iron-regulated protein K07231 K07231; putative iron-regulated protein D Dshi_2303 hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO D Dshi_0494 nnrS; NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Dshi_3182 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Dshi_1450 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Dshi_3198 nosL; nitrous oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D Dshi_2130 putative colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Dshi_0451 pqqB; coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D Dshi_0453 pqqD; coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D Dshi_2644 putative export-related chaperone K06878 K06878; tRNA-binding protein D Dshi_2305 hypothetical protein K06886 glbN; hemoglobin D Dshi_1543 hypothetical protein K07001 K07001; NTE family protein D Dshi_3310 rssA; patatin-like phospholipase K07001 K07001; NTE family protein D Dshi_2390 putative pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily D Dshi_0670 haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D Dshi_1631 sufB; sufB K09014 sufB; Fe-S cluster assembly protein SufB D Dshi_1626 sufD; sufD K09015 sufD; Fe-S cluster assembly protein SufD D Dshi_1005 putative ribonuclease BN K07058 K07058; membrane protein D Dshi_3446 fxsA; FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Dshi_1069 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Dshi_3348 rhodanese domain protein K07146 K07146; UPF0176 protein D Dshi_3889 cytochrome c oxidase caa3 assembly factor K02351 K02351; putative membrane protein D Dshi_2956 hypothetical protein K03745 slyX; SlyX protein D Dshi_3321 CreA family protein K05805 creA; CreA protein D Dshi_4050 conserved hypothetical protein K08982 K08982; putative membrane protein D Dshi_3774 conserved hypothetical protein K08982 K08982; putative membrane protein D Dshi_1936 conserved hypothetical protein K08990 ycjF; putative membrane protein D Dshi_3147 conserved hypothetical protein K09914 K09914; putative lipoprotein D Dshi_1875 putative inner membrane protein K21741 rclC; reactive chlorine resistance protein C C 99997 Function unknown D Dshi_4173 conserved hypothetical protein K06889 K06889; uncharacterized protein D Dshi_3668 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein D Dshi_2779 conserved hypothetical protein K06890 K06890; uncharacterized protein D Dshi_2554 hypothetical protein K06903 W; Bacteriophage baseplate protein W D Dshi_2460 hypothetical protein K06903 W; Bacteriophage baseplate protein W D Dshi_2466 hypothetical protein K06907 FI; Bacteriophage tail sheath protein D Dshi_2564 hypothetical protein K06907 FI; Bacteriophage tail sheath protein D Dshi_1937 YcjX-like family protein K06918 K06918; uncharacterized protein D Dshi_1346 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Dshi_2574 hypothetical protein K06929 K06929; uncharacterized protein D Dshi_1063 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Dshi_4224 conserved hypothetical protein K06938 K06938; uncharacterized protein D Dshi_1118 conserved hypothetical protein K06953 K06953; uncharacterized protein D Dshi_0367 amine oxidase K06954 K06954; uncharacterized protein D Dshi_1826 hypothetical protein K06995 K06995; uncharacterized protein D Dshi_3281 putative endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Dshi_1634 putative alpha/beta hydrolase K07018 K07018; uncharacterized protein D Dshi_1359 protein of unknown function DUF35 K07068 K07068; uncharacterized protein D Dshi_0645 TRAP-type uncharacterized transport system K07080 K07080; uncharacterized protein D Dshi_1924 putative TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_1195 TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_1443 TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_0993 TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_1087 TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_2288 putative TRAP transporter solute receptor K07080 K07080; uncharacterized protein D Dshi_3237 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Dshi_0586 kpsM; capsule polysaccharide transport K07089 K07089; uncharacterized protein D Dshi_2847 conserved hypothetical protein K07090 K07090; uncharacterized protein D Dshi_1857 hypothetical protein K07090 K07090; uncharacterized protein D Dshi_2024 conserved hypothetical protein K07090 K07090; uncharacterized protein D Dshi_0205 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dshi_2377 hypothetical protein K07093 K07093; uncharacterized protein D Dshi_2518 conserved hypothetical protein K07112 K07112; uncharacterized protein D Dshi_2519 conserved hypothetical protein K07112 K07112; uncharacterized protein D Dshi_2813 conserved hypothetical protein K07112 K07112; uncharacterized protein D Dshi_2569 hypothetical protein K07120 K07120; uncharacterized protein D Dshi_2669 hypothetical protein K07126 K07126; uncharacterized protein D Dshi_3747 conserved hypothetical protein K07133 K07133; uncharacterized protein D Dshi_0327 mosc; MOSC domain protein K07140 K07140; MOSC domain-containing protein D Dshi_0034 ATP-dependent protease La (LON) domain protein K07157 K07157; uncharacterized protein D Dshi_2355 hypothetical protein K07161 K07161; uncharacterized protein D Dshi_1214 coxE; VWA containing CoxE family protein K07161 K07161; uncharacterized protein D Dshi_0331 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Dshi_1398 domain of unknown function DUF1791 K09004 K09004; uncharacterized protein D Dshi_1787 conserved hypothetical protein K09005 K09005; uncharacterized protein D Dshi_2386 conserved hypothetical protein K09117 K09117; uncharacterized protein D Dshi_2928 conserved hypothetical protein UPF0153 family K09160 K09160; uncharacterized protein D Dshi_2661 putative carbon monoxide dehydrogenase K09386 K09386; uncharacterized protein D Dshi_0368 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein D Dshi_2149 putative cupin K09705 K09705; uncharacterized protein D Dshi_2133 conserved hypothetical protein DUF1284 K09706 K09706; uncharacterized protein D Dshi_0110 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Dshi_0968 YCII-related K09780 K09780; uncharacterized protein D Dshi_3413 YCII-related domain protein K09780 K09780; uncharacterized protein D Dshi_1739 hypothetical protein K09781 K09781; uncharacterized protein D Dshi_1454 conserved hypothetical protein K09790 K09790; uncharacterized protein D Dshi_0490 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Dshi_3459 protein of unknown function DUF454 transmembrane K09790 K09790; uncharacterized protein D Dshi_0033 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Dshi_0715 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Dshi_0791 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Dshi_0997 conserved hypothetical protein K09822 K09822; uncharacterized protein D Dshi_3333 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Dshi_0135 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Dshi_1928 conserved hypothetical protein DUF484 K09921 K09921; uncharacterized protein D Dshi_0195 conserved hypothetical protein K09928 K09928; uncharacterized protein D Dshi_0773 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Dshi_0014 conserved hypothetical protein K09931 K09931; uncharacterized protein D Dshi_2734 hypothetical protein K09937 K09937; uncharacterized protein D Dshi_0566 conserved hypothetical protein K09947 K09947; uncharacterized protein D Dshi_0226 protein of unknown function DUF1244 K09948 K09948; uncharacterized protein D Dshi_2285 hypothetical protein K09950 K09950; uncharacterized protein D Dshi_0946 conserved hypothetical protein K09966 K09966; uncharacterized protein D Dshi_2217 conserved hypothetical protein K09981 K09981; uncharacterized protein D Dshi_3667 conserved hypothetical protein K09981 K09981; uncharacterized protein D Dshi_2333 conserved hypothetical protein K09985 K09985; uncharacterized protein D Dshi_2907 conserved hypothetical protein DUF1285 K09986 K09986; uncharacterized protein D Dshi_0255 protein of unknown function DUF1013 K09987 K09987; uncharacterized protein D Dshi_1879 conserved hypothetical protein K09989 K09989; uncharacterized protein D Dshi_0565 conserved hypothetical protein K07338 K07338; uncharacterized protein D Dshi_3562 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024