+E Ribosome biogenesis KO
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Ribosome Biogenesis - Erwinia pyrifoliae Ep1/96
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D EpC_10050 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D EpC_04880 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C EpC_10060 era; GTP-binding protein K03595 era; GTPase
C EpC_03480 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C EpC_08450 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C EpC_03600 nusA; Transcription elongation protein NusA (N utilization substance protein A) K02600 nusA; transcription termination/antitermination protein NusA
C EpC_26450 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C EpC_02430 nusG; Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D EpC_13230 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D EpC_07110 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D EpC_33430 sun; 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D EpC_06100 yjjT; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D EpC_34890 rsmD; 16S rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D EpC_29800 yggJ; conserved uncharacterized protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D EpC_15890 rsmF; Ribosomal RNA small subunit methyltransferase F K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D EpC_37000 gidB; Methyltransferase (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D EpC_07350 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D EpC_05480 Putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D EpC_35220 putative methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D EpC_16010 rrmA; Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D EpC_05070 rlmB; 23S rRNA (Guanosine-2\'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D EpC_03540 rrmJ; Ribosomal RNA large subunit methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D EpC_23440 rlmF; Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D EpC_05660 rsmD; ribosomal RNA small subunit methyltransferase D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D EpC_24870 conserved uncharacterized protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D EpC_22260 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D EpC_35270 yhiR; conserved uncharacterized protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D EpC_22440 Putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D EpC_28530 mtfA; RNA 2\'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D EpC_10430 yfgB; conserved uncharacterized protein YfgB K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D EpC_28430 rumA; 23S rRNA (Uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D EpC_07160 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D EpC_10740 rluA; Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D EpC_16780 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D EpC_21550 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D EpC_27690 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D EpC_20890 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D EpC_00370 rluF; Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D EpC_09070 spoU; Predicted tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C EpC_06120 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C EpC_21740 rimJ; Ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C EpC_27820 rimM; 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM
C EpC_22760 ycaO; Conserved uncharacterized protein YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C EpC_02790 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C EpC_12040 yfcB; Probable adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C EpC_20960 ycfD; conserved uncharacterized protein YcfD K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C EpC_10050 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C EpC_21560 ams; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C EpC_02930 cafA; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C EpC_29830 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C EpC_17260 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C EpC_03670 deaD; Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C EpC_09940 ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C EpC_10060 era; GTP-binding protein K03595 era; GTPase
C EpC_04870 engC; Probable GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C EpC_10500 engA; GTP-binding protein K03977 engA; GTPase
C EpC_03480 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C EpC_05000 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C EpC_33370 Putative DNA topoisomerase, fragment K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C EpC_00420 spoT; Guanosine-3\',5\'-bis(diphosphate) 3\'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C EpC_03620 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C EpC_03590 YhbC-like protein K09748 rimP; ribosome maturation factor RimP
C EpC_25490 conserved uncharacterized protein K14761 rlbA; ribosome-associated protein
C EpC_24860 ybeB; conserved uncharacterized protein YbeB K09710 ybeB; ribosome-associated protein
C EpC_24740 ybeY; conserved uncharacterized protein YbeY K07042 ybeY; probable rRNA maturation factor
C EpC_03530 conserved uncharacterized protein K07574 yhbY; RNA-binding protein
C EpC_36360 Conserved uncharacterized protein K14762 yibL; ribosome-associated protein
C EpC_05310 conserved uncharacterized protein K09889 yjgA; ribosome-associated protein
C EpC_03290 YhbH; Sigma 54 modulation protein/S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor
C EpC_27710 yfiA; Ribosome associated factor, stabilizes ribosomes against dissociatio YfiA K05809 raiA; ribosome-associated inhibitor A
C EpC_19770 engD; Putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C EpC_21530 yceD; conserved uncharacterized protein YceD K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024