+F Repair protein KO #

  DNA Repair and Recombination Proteins - Flavobacterium psychrophilum Z2

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AMR72_09795 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMR72_01355 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AMR72_01730 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMR72_11965 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMR72_16510 DNA lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AMR72_04080 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AMR72_01695 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_08420 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_00635 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_09930 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AMR72_09795 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMR72_01355 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AMR72_01730 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMR72_07295 Fe-S cluster assembly protein HesB K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AMR72_11965 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMR72_14950 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AMR72_06235 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E AMR72_16510 DNA lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AMR72_04080 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AMR72_17960 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMR72_09265 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMR72_01665 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E AMR72_11645 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AMR72_16780 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AMR72_07820 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AMR72_00805 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMR72_02600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMR72_04100 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMR72_04385 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AMR72_10970 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AMR72_18065 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMR72_07820 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AMR72_16780 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AMR72_06385 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AMR72_06380 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AMR72_13715 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AMR72_09495 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AMR72_12435 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E AMR72_01735 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AMR72_06365 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E AMR72_08000 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AMR72_02165 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AMR72_00760 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AMR72_10270 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AMR72_14835 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_16950 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_15100 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_01500 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_15365 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_06490 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMR72_00885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AMR72_16780 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AMR72_18065 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMR72_09565 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AMR72_11970 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AMR72_15190 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AMR72_09860 recombinase RecA K03553 recA; recombination protein RecA E AMR72_07660 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMR72_07700 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMR72_07950 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AMR72_16815 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E AMR72_09860 recombinase RecA K03553 recA; recombination protein RecA E AMR72_09235 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AMR72_14410 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E AMR72_17985 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMR72_11645 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AMR72_10695 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AMR72_13820 recombinase RecR K06187 recR; recombination protein RecR E AMR72_16900 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AMR72_07660 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMR72_07700 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMR72_07950 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AMR72_07020 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AMR72_01120 hypothetical protein K10979 ku; DNA end-binding protein Ku E AMR72_01115 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMR72_15345 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AMR72_03730 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AMR72_04745 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AMR72_00895 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AMR72_06915 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AMR72_11960 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F AMR72_05795 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AMR72_11645 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AMR72_10695 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AMR72_13820 recombinase RecR K06187 recR; recombination protein RecR F AMR72_16780 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AMR72_13990 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AMR72_05785 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AMR72_00805 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMR72_02600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMR72_04100 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMR72_04385 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AMR72_15375 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMR72_11045 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMR72_16370 hypothetical protein K03502 umuC; DNA polymerase V D AMR72_16365 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AMR72_09860 recombinase RecA K03553 recA; recombination protein RecA D AMR72_16900 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AMR72_17215 Error-prone repair protein ImuA K14160 imuA; protein ImuA D AMR72_17210 nucleotidyltransferase K14161 imuB; protein ImuB D AMR72_17205 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMR72_15370 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMR72_09565 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AMR72_11970 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AMR72_15190 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AMR72_09135 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AMR72_15295 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D AMR72_09425 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AMR72_01695 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_08420 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_00635 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMR72_09930 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AMR72_11840 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMR72_18040 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMR72_18045 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D AMR72_11835 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D AMR72_15965 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024