+F Repair protein KO
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DNA Repair and Recombination Proteins - Geobacillus thermoleovorans CCB_US3_UF5
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D GTCCBUS3UF5_11190 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E GTCCBUS3UF5_38450 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E GTCCBUS3UF5_5790 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E GTCCBUS3UF5_24550 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D GTCCBUS3UF5_34340 MutT/nudix K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GTCCBUS3UF5_32150 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D GTCCBUS3UF5_11190 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E GTCCBUS3UF5_38450 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E GTCCBUS3UF5_5400 DNA-3-methyladenine glycosylase yfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E GTCCBUS3UF5_5790 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E GTCCBUS3UF5_30730 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E GTCCBUS3UF5_24550 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E GTCCBUS3UF5_27890 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E GTCCBUS3UF5_6570 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E GTCCBUS3UF5_29040 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E GTCCBUS3UF5_3630 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E GTCCBUS3UF5_30750 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E GTCCBUS3UF5_34590 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E GTCCBUS3UF5_34600 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E GTCCBUS3UF5_30030 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E GTCCBUS3UF5_3620 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GTCCBUS3UF5_30750 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E GTCCBUS3UF5_3630 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F GTCCBUS3UF5_1130 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F GTCCBUS3UF5_1140 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F GTCCBUS3UF5_1480 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F GTCCBUS3UF5_38060 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F GTCCBUS3UF5_13560 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F GTCCBUS3UF5_560 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E GTCCBUS3UF5_15030 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E GTCCBUS3UF5_30300 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E GTCCBUS3UF5_15040 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E GTCCBUS3UF5_27050 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E GTCCBUS3UF5_27040 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E GTCCBUS3UF5_30890 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E GTCCBUS3UF5_14500 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E GTCCBUS3UF5_20 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E GTCCBUS3UF5_28320 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E GTCCBUS3UF5_290 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E GTCCBUS3UF5_16930 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E GTCCBUS3UF5_200 DNA polymerase III (Gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E GTCCBUS3UF5_3630 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E GTCCBUS3UF5_3620 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GTCCBUS3UF5_38980 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E GTCCBUS3UF5_35730 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E GTCCBUS3UF5_28850 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E GTCCBUS3UF5_14920 hypothetical protein K03553 recA; recombination protein RecA
E GTCCBUS3UF5_29160 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E GTCCBUS3UF5_29150 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E GTCCBUS3UF5_13580 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E GTCCBUS3UF5_7590 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E GTCCBUS3UF5_7580 Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E GTCCBUS3UF5_14920 hypothetical protein K03553 recA; recombination protein RecA
E GTCCBUS3UF5_920 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
E GTCCBUS3UF5_50 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E GTCCBUS3UF5_13740 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E GTCCBUS3UF5_38780 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E GTCCBUS3UF5_6340 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E GTCCBUS3UF5_6570 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E GTCCBUS3UF5_29040 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E GTCCBUS3UF5_28030 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E GTCCBUS3UF5_220 hypothetical protein K06187 recR; recombination protein RecR
E GTCCBUS3UF5_26990 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E GTCCBUS3UF5_24520 Holliday junction resolvase recU K03700 recU; recombination protein U
E GTCCBUS3UF5_29160 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E GTCCBUS3UF5_29150 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E GTCCBUS3UF5_7570 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E GTCCBUS3UF5_7560 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E GTCCBUS3UF5_7590 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E GTCCBUS3UF5_7580 Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F GTCCBUS3UF5_70 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F GTCCBUS3UF5_60 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F GTCCBUS3UF5_14020 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F GTCCBUS3UF5_25030 DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F GTCCBUS3UF5_2860 hypothetical protein K07455 recT; recombination protein RecT
F GTCCBUS3UF5_6570 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F GTCCBUS3UF5_29040 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F GTCCBUS3UF5_28030 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F GTCCBUS3UF5_220 hypothetical protein K06187 recR; recombination protein RecR
F GTCCBUS3UF5_3630 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F GTCCBUS3UF5_25330 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F GTCCBUS3UF5_34590 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F GTCCBUS3UF5_34600 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D GTCCBUS3UF5_14920 hypothetical protein K03553 recA; recombination protein RecA
D GTCCBUS3UF5_15290 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D GTCCBUS3UF5_26990 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D GTCCBUS3UF5_38980 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GTCCBUS3UF5_35730 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GTCCBUS3UF5_5680 hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D GTCCBUS3UF5_30310 hydrolase K02347 polX; DNA polymerase (family X)
C DNA helicases
D GTCCBUS3UF5_24630 DnaQ family exonuclease/DinG family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D GTCCBUS3UF5_17800 ATP-dependent helicase ypvA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D GTCCBUS3UF5_34340 MutT/nudix K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GTCCBUS3UF5_32150 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GTCCBUS3UF5_10820 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GTCCBUS3UF5_27310 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GTCCBUS3UF5_31160 Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GTCCBUS3UF5_10830 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D GTCCBUS3UF5_30920 Bifunctional oligoribonuclease and PAP phosphatase nrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024