+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
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ACRISPR-Cas system
B Universal Cas proteins
C HCBAA847_1422 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
C HCBAA847_1421 cas2; CRISPR-associated protein K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
C Subtype I-A factors
D HCBAA847_1665 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-B factors
D HCBAA847_1665 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D HCBAA847_1665 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D HCBAA847_1665 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
D HCBAA847_1423 csn1; CRISPR-associated protein K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
C Subtype II-A factors
C Subtype II-B factors
D HCBAA847_1665 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C HCBAA847_2278 hsdR; type I restriction-modification enzyme K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C HCBAA847_0030 truncated putative type II restriction-modification enzyme K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C HCBAA847_2280 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C HCBAA847_2281 type I restriction-modification system K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C HCBAA847_0114 type I restriction enzyme modification subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
D HCBAA847_0387 conserved hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
C DNA methyltransferases
D HCBAA847_2198 fokI; modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D HCBAA847_1922 type II restriction-modification enzyme K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D HCBAA847_2199 ulcer associated adenine specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D HCBAA847_0102 ulcer associated adenine specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D HCBAA847_0784 adenine specific DNA methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0785 truncated adenine specific DNA methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0793 conserved hypothetical protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0794 conserved hypothetical protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0940 adenine-specific DNA methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_1543 putative methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_1953 conserved hypothetical protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0741 N-4/N-6 DNA methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D HCBAA847_0474 cytosine DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D HCBAA847_2076 type II 5-cytosoine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D HCBAA847_0787 cytosine specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
C HCBAA847_1429 restriction endonuclease EcoP15I K01156 res; type III restriction enzyme [EC:3.1.21.5]
C HCBAA847_2192 type III restriction-modification enzyme K01156 res; type III restriction enzyme [EC:3.1.21.5]
C HCBAA847_2191 adenine specific DNA methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C HCBAA847_0061 adenine-specific DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C HCBAA847_1430 conserved hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
B Type IV R-M system
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D HCBAA847_1613 pemK; growth inhibitor protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D HCBAA847_1645 transcriptional modulator of MazE/toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
D HCBAA847_0218 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D HCBAA847_0233 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
C YafQ-dinJ
D HCBAA847_1928 addiction module toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D HCBAA847_0037 putative addiction module toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
C YoeB-YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
D HCBAA847_0039 death-on-curing family protein K07341 doc; death on curing protein
C HigB-HigA
C MqsR-MqsA
C VapC-VapB
D HCBAA847_0293 vapC; virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D HCBAA847_0294 vapB; putative virulence-associated protein K18829 mvpT; antitoxin VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D HCBAA847_1901 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D HCBAA847_2326 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D HCBAA847_0197 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D HCBAA847_0430 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C HCBAA847_0475 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023