+F Repair protein KO
#
DNA Repair and Recombination Proteins - Jannaschia sp. CCS1
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Jann_3470 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Jann_1873 deoxyribodipyrimidine photo-lyase family protein (cryptochrome) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Jann_1989 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Jann_2809 deoxyribodipyrimidine photo-lyase family protein (cryptochrome) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Jann_0395 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Jann_1669 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Jann_0292 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_0072 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_2319 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_0908 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Jann_3470 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Jann_1668 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Jann_1873 deoxyribodipyrimidine photo-lyase family protein (cryptochrome) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Jann_1989 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Jann_2809 deoxyribodipyrimidine photo-lyase family protein (cryptochrome) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Jann_3641 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D Jann_0213 DNA-N1-methyladenine dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E Jann_2068 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Jann_3901 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Jann_1964 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Jann_0395 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Jann_0495 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Jann_4210 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Jann_1669 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Jann_2815 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Jann_0421 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E Jann_3002 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Jann_2504 DNA ligase NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Jann_1683 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Jann_1723 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E Jann_3602 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E Jann_3919 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E Jann_2777 ATP-dependent DNA helicase, Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Jann_1683 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Jann_2504 DNA ligase NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Jann_0568 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Jann_0569 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Jann_0617 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Jann_0513 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Jann_2322 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Jann_0209 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Jann_4047 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Jann_3300 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Jann_0090 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Jann_0940 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Jann_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Jann_1816 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E Jann_0409 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Jann_1276 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Jann_0194 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Jann_0132 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Jann_3876 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Jann_2504 DNA ligase NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Jann_2777 ATP-dependent DNA helicase, Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Jann_1885 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E Jann_2857 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Jann_1986 recA protein K03553 recA; recombination protein RecA
E Jann_0965 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Jann_0966 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Jann_0964 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Jann_1033 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E Jann_1986 recA protein K03553 recA; recombination protein RecA
E Jann_1712 DNA replication and repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Jann_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E Jann_2503 DEAD/DEAH box helicase-like protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Jann_3002 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Jann_0527 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Jann_3878 recombination protein RecR K06187 recR; recombination protein RecR
E Jann_2747 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Jann_0965 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Jann_0966 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Jann_0964 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E Jann_4066 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E Jann_2150 protein of unknown function DUF853 NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Jann_2494 DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Jann_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Jann_3160 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F Jann_0278 putative DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Jann_0336 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Jann_3002 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Jann_0527 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Jann_3878 recombination protein RecR K06187 recR; recombination protein RecR
F Jann_2504 DNA ligase NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Jann_1783 integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
F Jann_3585 integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F Jann_0443 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Jann_1723 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F Jann_3602 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F Jann_4229 hvrA; Trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS
F Jann_0798 hvrA; Trans-acting regulatory protein hvrA K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Jann_3995 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D Jann_1986 recA protein K03553 recA; recombination protein RecA
D Jann_1874 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Jann_2747 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Jann_1560 hypothetical protein K14160 imuA; protein ImuA
D Jann_1559 hypothetical protein K14161 imuB; protein ImuB
D Jann_1558 error-prone DNA polymerase, DnaE-like protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Jann_1885 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Jann_0986 DEAD/DEAH box helicase-like protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Jann_0292 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_0072 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_2319 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jann_0908 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Jann_0951 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Jann_2472 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024