+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Lates calcarifer (barramundi perch)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 108889946 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 108873496 mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 108878776 cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 108895626 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 108877776 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 108887934 ramac; RNA guanine-N7 methyltransferase activating subunit isoform X1 K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 108885317 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 108876649 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 108877850 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 108889657 cleavage and polyadenylation specificity factor subunit 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 108894952 cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 108885554 polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 108891320 LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 108900339 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 108873506 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 108888139 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 108891568 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 108877605 cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 108879058 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 108896446 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 108884919 pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 108886515 WD repeat-containing protein 82 isoform X1 K14962 WDR82; COMPASS component SWD2
E 108899165 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 108873472 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 108875036 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 108878132 serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 108882045 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 108880625 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 108886491 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 108886564 LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 108872499 LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 108877823 cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 108897213 symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 108890716 small nuclear ribonucleoprotein-associated proteins B and B' isoform X1 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 108879194 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 108877526 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 108897575 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 108885161 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 108887621 small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 108883968 U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 108882803 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 108873506 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 108888139 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 108891568 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 108872499 LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 108897213 symplekin K06100 SYMPK; symplekin
E 108884084 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 108875500 histone RNA hairpin-binding protein isoform X2 K18710 SLBP; histone RNA hairpin-binding protein
E 108899278 LOW QUALITY PROTEIN: CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 108893509 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 108890266 transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 108902339 LOW QUALITY PROTEIN: N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 108896635 N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 108895006 N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 108890382 LOW QUALITY PROTEIN: RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 108883118 pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 108889597 virma; protein virilizer homolog K22910 VIRMA; protein virilizer
E 108876521 RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 108889756 putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 108886464 LOW QUALITY PROTEIN: RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 108872991 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 108897445 E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 108895729 poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 108898051 poly(A) polymerase type 3 isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 108878149 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 108875804 speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 108880436 bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 108887986 RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 108876999 alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 108899389 RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 108876387 tardbpa; TAR DNA binding protein, like K23600 TARDBP; TAR DNA-binding protein 43
E 108899245 tardbpb; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 108898792 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 108895912 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 108888688 mRNA N(3)-methylcytidine methyltransferase METTL8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 108898470 LOW QUALITY PROTEIN: methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 108887576 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 108889833 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 108896789 terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 108872817 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 108895590 zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 108892708 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 108893505 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 108899514 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 108878925 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 108901682 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 108881046 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 108884547 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 108896383 ddx39b; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 108882299 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 108881484 coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 108882395 protein CASC3 K14323 CASC3; protein CASC3
E 108887611 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 108900598 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 108896160 pinin K13114 PNN; pinin
E 108903047 acin1b; apoptotic chromatin condensation inducer 1b K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 108883933 acin1a; apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 108886144 RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 108897984 LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 108883338 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 108893425 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 108874587 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 108881046 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 108884547 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 108878735 THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 108891025 THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 108899666 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 108877179 PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 108877523 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 108887655 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 108899083 transcription and mRNA export factor ENY2-2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 108882888 cetn2; uncharacterized protein cetn2 K10840 CETN2; centrin-2
E 108895745 cetn3; centrin-3 K16466 CETN3; centrin-3
E 108895737 centrin-3 K16466 CETN3; centrin-3
E 108897192 LOW QUALITY PROTEIN: germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 108884494 LOW QUALITY PROTEIN: nucleoprotein TPR-like K09291 TPR; nucleoprotein TPR
E 108896735 tprb; LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 108885621 mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 108901479 LOW QUALITY PROTEIN: protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 108897569 nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 108880174 nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 108888904 LOW QUALITY PROTEIN: nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 108890151 nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 108874074 nucleoporin p54 isoform X2 K14308 NUP54; nuclear pore complex protein Nup54
E 108888692 nup62l; nucleoporin 62 like K14306 NUP62; nuclear pore complex protein Nup62
E 108876130 LOW QUALITY PROTEIN: nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 108901884 nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 108891318 nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 108895891 LOW QUALITY PROTEIN: nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 108880254 LOW QUALITY PROTEIN: nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 108882508 nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 108874016 nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 108898143 LOW QUALITY PROTEIN: nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 108888960 nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 108891733 nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 108897623 nucleoporin NUP35 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 108901814 nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 108900186 nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 108874004 LOW QUALITY PROTEIN: nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 108893901 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 108900777 nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 108877167 nup42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 108884207 nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 108876293 nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 108900555 LOW QUALITY PROTEIN: ranBP2-like and GRIP domain-containing protein 3 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 108874862 LOW QUALITY PROTEIN: sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 108900213 aladin isoform X1 K14320 AAAS; aladin
E 108895745 cetn3; centrin-3 K16466 CETN3; centrin-3
E 108895737 centrin-3 K16466 CETN3; centrin-3
E 108881625 mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 108872558 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 108882777 NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 108878285 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 108887863 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 108873392 acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 108886837 acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 108874011 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 108874872 elavl1a; ELAV-like protein 1 isoform X3 K13088 ELAVL1; ELAV-like protein 1
E 108902964 LOW QUALITY PROTEIN: ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 108881376 ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 108895348 ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 108882820 FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 108878173 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 108885429 zgc:136908; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 108892428 protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 108875641 transportin-2 K18727 TNPO2; transportin-2
E 108880441 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 108895727 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 108882517 xpo1a; exportin-1 K14290 XPO1; exportin-1
E 108895967 LOW QUALITY PROTEIN: exportin-7 K18460 XPO7; exportin-7
E 108877663 rangap1a; ran GTPase-activating protein 1a isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 108889111 LOW QUALITY PROTEIN: ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 108879495 eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 108892330 eukaryotic translation initiation factor 4E type 2-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 108883550 eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 108885168 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 108882211 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 108884426 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 108897926 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 108883758 eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 108895244 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 108880858 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 108888194 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 108883466 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X5 K03260 EIF4G; translation initiation factor 4G
E 108874579 eif4g2a; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 108902520 eif4g3a; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 108884039 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 108874421 eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 108878192 eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 108886048 eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 108897254 eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 108882778 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 108889352 eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 108887471 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 108892493 protein angel homolog 1 K18729 ANGEL; protein angel
E 108890331 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108882021 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108878960 synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 108882784 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 108878859 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 108899872 LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 108892459 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 108882817 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108887837 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108893649 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108886289 cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108878939 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108897616 ddx3xa; DEAD-box helicase 3 X-linked a isoform X5 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 108892830 ddx3xb; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 108883453 GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 108902160 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 108889490 embryonic polyadenylate-binding protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 108898001 LOW QUALITY PROTEIN: polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 108898133 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 108876275 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 108881239 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 108885288 polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 108888764 polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 108901184 LOW QUALITY PROTEIN: helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 108893799 LOW QUALITY PROTEIN: deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 108895423 malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 108897359 density-regulated protein isoform X2 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 108891504 APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 108890502 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 108882980 heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 108876473 heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 108877443 DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 108878256 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 108893503 RNA-binding protein Musashi homolog 2 isoform X2 K14411 MSI; RNA-binding protein Musashi
E 108900455 msi2b; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 108899685 RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 108896821 HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 108890406 protein pelota homolog K06965 PELO; protein pelota
E 108887658 embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 108898238 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 108889851 ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 108884059 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 108902635 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 108890982 SAP domain-containing ribonucleoprotein isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 108889897 regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 108884195 larp6b; la-related protein 6b K18733 LARP6; la-related protein 6
E 108897693 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 108878736 transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 108893437 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 108895296 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 108878403 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 108877570 polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 108873527 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 108887279 leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 108890427 LOW QUALITY PROTEIN: protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 108899222 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 108889131 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 108898115 LOW QUALITY PROTEIN: G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 108883653 regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 108902765 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 108895880 regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 108895420 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 108901251 regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 108879929 LOW QUALITY PROTEIN: regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 108893912 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 108882943 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 108875225 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 108895267 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 108882808 ppp2r2ba; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108886658 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108897316 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108894427 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108878312 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108885534 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108896445 LOW QUALITY PROTEIN: protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 108874999 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 108901295 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 108896180 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 108882368 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108901633 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108896798 LOW QUALITY PROTEIN: protein phosphatase 2, regulatory subunit B', gamma b K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108875006 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108888773 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108895966 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 108874365 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 108898468 serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 108899466 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 108893430 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 108884877 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 108893665 nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 108890412 nonsense-mediated mRNA decay factor SMG9 K18735 SMG9; protein SMG9
E 108883453 GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 108902160 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 108878579 selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 108887899 selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 108876126 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 108880667 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 108889045 GTP binding protein 1, like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 108901133 pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 108875541 unconventional myosin-Vb K10357 MYO5; myosin V
E 108876958 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 108876676 unconventional myosin-Va K10357 MYO5; myosin V
E 108876677 unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 108877283 si:dkey-110c1.10; LOW QUALITY PROTEIN: unconventional myosin-Va K10357 MYO5; myosin V
E 108901826 LOW QUALITY PROTEIN: protein bicaudal D homolog 1 K18739 BICD; protein bicaudal D
E 108886533 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 108900177 protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 108882164 zgc:162200; LOW QUALITY PROTEIN: protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 108897532 protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 108892565 piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 108899372 LOW QUALITY PROTEIN: actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 108877582 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 108887895 mbpb; myelin basic protein b K17269 MBP; myelin basic protein
E 108887901 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 108899235 mbpa; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 108883291 vimentin A2 K07606 VIM; vimentin
E 108895407 LOW QUALITY PROTEIN: peripherin K07606 VIM; vimentin
E 108891048 LOW QUALITY PROTEIN: desmin-like K07606 VIM; vimentin
E 108901915 mt2; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 108895017 LOW QUALITY PROTEIN: transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 108882464 transcriptional regulator Myc-B K04377 MYC; Myc proto-oncogene protein
E 108874403 mych; myelocytomatosis oncogene homolog K04377 MYC; Myc proto-oncogene protein
E 108878061 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 108879265 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 108884406 T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 108876604 nanos homolog 1 K18741 NANOS1; protein nanos 1
E 108901533 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
E 108881725 nanos homolog 2-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 108874467 fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 108894880 far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 108880409 LOW QUALITY PROTEIN: far upstream element-binding protein 2-like K13210 FUBP; far upstream element-binding protein
E 108884262 far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 108875638 LOW QUALITY PROTEIN: far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 108895022 si:dkey-37o8.1; LOW QUALITY PROTEIN: elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 108898915 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 108898922 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 108898928 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 108873453 eef1a1a; elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
E 108884517 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 108898906 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 108878393 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 108888870 HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 108888062 arf-GAP domain and FG repeat-containing protein 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 108897079 arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 108883726 agfg1b; arf-GAP domain and FG repeat-containing protein 1b K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 108886324 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X3 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 108881820 LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 108889873 double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 108877045 LOW QUALITY PROTEIN: insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 108874253 polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 108874871 ptbp1a; polypyrimidine tract-binding protein 1a isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 108882817 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108887837 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108893649 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108886289 cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108878939 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 108890331 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108882021 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108878960 synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 108882784 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 108878859 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 108884847 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 108900216 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 108887690 pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108886279 zgc:110045; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108889512 pcbp4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108887754 poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108882080 LOW QUALITY PROTEIN: poly(rC)-binding protein 2-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108873098 poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 108876710 caprin1b; caprin-1b isoform X1 K18743 CAPRIN1; caprin-1
E 108889671 caprin-1a K18743 CAPRIN1; caprin-1
E 108897513 caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 108891673 Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 108896664 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 108876912 ago2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 108899308 ago3b; protein argonaute-3 isoform X3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 108899450 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 108899451 ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 108903128 LOW QUALITY PROTEIN: protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 108879495 eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 108892330 eukaryotic translation initiation factor 4E type 2-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 108883550 eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 108885168 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 108882211 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 108884426 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 108897926 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 108883653 regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 108902765 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 108897616 ddx3xa; DEAD-box helicase 3 X-linked a isoform X5 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 108892830 ddx3xb; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 108880713 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108876149 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108899382 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108899425 RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 108880536 RNA-binding protein MEX3B isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 108883598 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 108878691 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 108884940 fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 108885617 protein LSM14 homolog B K18749 LSM14; protein LSM14
E 108900189 protein LSM14 homolog B K18749 LSM14; protein LSM14
E 108876904 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 108885230 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 108884847 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 108900216 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 108891673 Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 108877016 LOW QUALITY PROTEIN: Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 108889656 Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 108903048 LOW QUALITY PROTEIN: LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 108889450 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 108889467 putative helicase mov-10-B.2 isoform X8 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 108873545 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 108899517 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 108882727 LOW QUALITY PROTEIN: transportin-1 K18752 TNPO1; transportin-1
E 108898468 serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 108899466 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 108893430 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 108884877 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 108888398 zgc:162730; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 108874907 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 108889007 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 108888411 zgc:114130; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 108884641 mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 108901777 zfp36l1b; mRNA decay activator protein ZFP36L1b isoform X1 K18753 ZFP36L; butyrate response factor
E 108887048 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 108898704 lin28aa; protein lin-28 homolog A isoform X1 K18754 LIN28; protein lin-28
E 108900260 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 108883101 protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 108875667 huntingtin isoform X1 K04533 HD; huntingtin
E 108897506 importin-8 isoform X1 K18755 IPO8; importin-8
E 108897364 protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 108899177 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 108882980 heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 108876473 heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 108883401 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b K04345 PKA; protein kinase A [EC:2.7.11.11]
E 108885432 prkacab; LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 108902709 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 108881271 prkacba; protein kinase, cAMP-dependent, catalytic, beta a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 108893377 la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 108902200 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 108882170 LOW QUALITY PROTEIN: ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
E 108890418 LOW QUALITY PROTEIN: ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 108892192 atxn2l; ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 108877699 m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 108891659 mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 108894960 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 108878003 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 108878872 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 108884373 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 108902772 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 108894362 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 108885071 LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 108893056 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 108881162 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 108901404 LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 108885774 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 108883162 klc1a; LOW QUALITY PROTEIN: kinesin light chain 1 K10407 KLC; kinesin light chain
E 108876147 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 108883704 LOW QUALITY PROTEIN: kinesin light chain 2 K10407 KLC; kinesin light chain
E 108875541 unconventional myosin-Vb K10357 MYO5; myosin V
E 108876958 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 108876676 unconventional myosin-Va K10357 MYO5; myosin V
E 108876677 unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 108877283 si:dkey-110c1.10; LOW QUALITY PROTEIN: unconventional myosin-Va K10357 MYO5; myosin V
E 108873085 tubulin alpha chain K07374 TUBA; tubulin alpha
E 108873086 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 108873129 si:ch211-114n24.6; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 108873135 tubulin alpha chain K07374 TUBA; tubulin alpha
E 108888647 tubulin alpha-1B chain isoform X2 K07374 TUBA; tubulin alpha
E 108889028 tubulin alpha-1B chain isoform X2 K07374 TUBA; tubulin alpha
E 108890957 tubulin alpha-1A chain isoform X1 K07374 TUBA; tubulin alpha
E 108890986 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 108880419 tubulin alpha chain K07374 TUBA; tubulin alpha
E 108880420 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 108890513 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 108880471 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 108895642 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 108899879 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 108882817 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108887837 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108893649 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108886289 cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108878939 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 108899872 LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 108892459 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 108877589 trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 108875829 tnrc6c2; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 108889125 LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 108881084 trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 108880287 LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 108901868 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 108901349 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 108875298 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 108885883 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 108886956 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 108888528 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 108881616 CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 108899234 CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 108882732 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 108899868 CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 108876908 garre1; LOW QUALITY PROTEIN: granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 108883873 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 108883559 LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 108881774 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 108872514 LOW QUALITY PROTEIN: protein Tob1-like K14443 TOB; protein Tob/BTG
E 108893832 protein BTG3 K14443 TOB; protein Tob/BTG
E 108899904 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 108877643 protein Tob2 K14443 TOB; protein Tob/BTG
E 108890421 si:dkey-79d12.5; protein BTG4 K14443 TOB; protein Tob/BTG
E 108880596 protein Tob1 K14443 TOB; protein Tob/BTG
E 108889259 protein BTG1 K14443 TOB; protein Tob/BTG
E 108889352 eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 108900094 LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 108876694 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 108897740 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 108901878 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 108885882 LOW QUALITY PROTEIN: nanos homolog 1-like K18761 NANOS3; protein nanos 3
E 108875658 nanos homolog 3 K18761 NANOS3; protein nanos 3
E 108895880 regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 108895420 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 108901251 regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 108879929 LOW QUALITY PROTEIN: regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 108888716 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108888717 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108888731 E3 ubiquitin-protein ligase TRIM21-like isoform X1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108882293 E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108873960 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108895357 E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 108900419 E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 108878408 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 108885802 interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 108878848 zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 108893287 ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 108881779 YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 108889532 YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 108875009 ythdf2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 108882198 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 108878468 cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 108886239 nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 108895438 cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 108889490 embryonic polyadenylate-binding protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 108898001 LOW QUALITY PROTEIN: polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 108898133 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 108876275 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 108881820 LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 108889873 double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 108890331 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108882021 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 108878960 synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 108874011 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 108874872 elavl1a; ELAV-like protein 1 isoform X3 K13088 ELAVL1; ELAV-like protein 1
E 108882476 ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 108873398 LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 108902923 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 108888456 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 108883758 eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 108895244 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 108882299 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 108884039 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 108880858 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 108888194 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 108883466 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X5 K03260 EIF4G; translation initiation factor 4G
E 108874579 eif4g2a; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 108902520 eif4g3a; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 108885025 LOW QUALITY PROTEIN: ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 108874981 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 108882757 rps6kal; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 108877833 rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 108899219 guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 108874450 traf2b; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 108878507 traf2a; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 108895456 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 108872558 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 108890566 histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 108887994 tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 108881438 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 108876475 LOW QUALITY PROTEIN: la-related protein 4 K18763 LARP4; la-related protein 4
E 108884787 la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 108891659 mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 108894960 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 108877699 m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 108880713 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108876149 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108899382 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108876694 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 108897740 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 108901878 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 108900094 LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 108878003 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 108878872 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 108884373 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 108902772 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 108894362 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 108885071 LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 108893056 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 108881162 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 108901404 LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 108896664 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 108872468 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 108882689 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 108878927 LOW QUALITY PROTEIN: m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 108875771 LOW QUALITY PROTEIN: probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 108875692 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 108888954 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 108891941 exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 108891789 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 108883402 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 108876230 exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 108901894 LOW QUALITY PROTEIN: exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 108890304 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 108893877 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 108900132 exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 108897303 exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 108894285 LOW QUALITY PROTEIN: DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 108876572 exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 108873357 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 108885236 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 108877013 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 108889046 terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 108900395 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 108896627 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 108878330 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 108874026 LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 108901184 LOW QUALITY PROTEIN: helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 108878181 tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 108883029 WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 108881616 CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 108899234 CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 108901868 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 108901349 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 108875298 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 108885883 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 108886956 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 108888528 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 108882732 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 108899868 CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 108897194 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 108902590 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 108886115 CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 108883559 LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 108881774 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 108901174 LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 108900945 ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 108872514 LOW QUALITY PROTEIN: protein Tob1-like K14443 TOB; protein Tob/BTG
E 108893832 protein BTG3 K14443 TOB; protein Tob/BTG
E 108899904 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 108877643 protein Tob2 K14443 TOB; protein Tob/BTG
E 108890421 si:dkey-79d12.5; protein BTG4 K14443 TOB; protein Tob/BTG
E 108880596 protein Tob1 K14443 TOB; protein Tob/BTG
E 108889259 protein BTG1 K14443 TOB; protein Tob/BTG
E 108895516 nocta; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 108900154 nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 108897584 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 108901173 LOW QUALITY PROTEIN: ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 108878927 LOW QUALITY PROTEIN: m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 108874806 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 108883022 LOW QUALITY PROTEIN: iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 108875771 LOW QUALITY PROTEIN: probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 108877475 LOW QUALITY PROTEIN: helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 108896142 nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 108887764 protein Smaug homolog 1 K27396 SMG; protein Smaug
E 108877976 protein Smaug homolog 2 K27396 SMG; protein Smaug
E 108895188 LOW QUALITY PROTEIN: focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 108883996 zc3h12ab; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 108893846 probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 108892899 LOW QUALITY PROTEIN: probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 108899324 probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 108898754 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 108897021 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 108885078 LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 108900082 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 108876403 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108892773 LOW QUALITY PROTEIN: beta-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108880749 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108889362 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108887527 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108892698 beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 108896242 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 108880468 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 108881444 pfkmb; phosphofructokinase, muscle b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 108898303 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 108876477 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 108880954 ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 108875502 stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 108902505 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 108888954 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 108875692 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 108883402 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 108890304 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024