+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lacticaseibacillus casei 12A

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E LCA12A_2286 family 1 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LCA12A_0871 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LCA12A_1718 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LCA12A_0821 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LCA12A_2520 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LCA12A_1040 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0247 mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0276 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0467 nudix-related transcriptional regulator K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_1849 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LCA12A_1078 methylated-DNA--protein-cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LCA12A_2286 family 1 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LCA12A_0871 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LCA12A_1718 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LCA12A_2443 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LCA12A_0745 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LCA12A_0041 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LCA12A_0821 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LCA12A_2293 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LCA12A_0854 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LCA12A_0883 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LCA12A_2346 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LCA12A_0042 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LCA12A_2244 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E LCA12A_0304 excinuclease ABC subunit A related protein K03701 uvrA; excinuclease ABC subunit A E LCA12A_2243 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E LCA12A_1538 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LCA12A_2345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LCA12A_2107 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LCA12A_0042 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LCA12A_2346 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LCA12A_2006 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LCA12A_2005 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LCA12A_1969 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LCA12A_0243 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LCA12A_1254 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LCA12A_0219 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LCA12A_0768 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E LCA12A_0793 MutS2 family recombination inhibitory protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LCA12A_0767 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LCA12A_1244 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LCA12A_1245 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LCA12A_1553 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LCA12A_2152 DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LCA12A_0618 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LCA12A_1523 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LCA12A_2696 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LCA12A_2292 DNA polymerase III, epsilon subunit related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LCA12A_2702 DNA polymerase III gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LCA12A_2346 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LCA12A_2345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LCA12A_2107 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LCA12A_0624 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LCA12A_0626 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LCA12A_0937 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LCA12A_0194 RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LCA12A_1498 RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LCA12A_2211 RecA family protein K03553 recA; recombination protein RecA E LCA12A_0315 RecA family protein K03553 recA; recombination protein RecA E LCA12A_0773 RuvA family Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LCA12A_0774 RuvB family Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LCA12A_1256 DNA helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LCA12A_1715 SbcC family exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E LCA12A_1714 SbcD family exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LCA12A_2211 RecA family protein K03553 recA; recombination protein RecA E LCA12A_0315 RecA family protein K03553 recA; recombination protein RecA E LCA12A_1848 DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LCA12A_0620 DNA recombination and repair protein K03629 recF; DNA replication and repair protein RecF E LCA12A_1267 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LCA12A_0883 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LCA12A_0845 DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E LCA12A_2700 recombination protein K06187 recR; recombination protein RecR E LCA12A_1249 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LCA12A_0818 recombination protein RecU K03700 recU; recombination protein U E LCA12A_0773 RuvA family Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LCA12A_0774 RuvB family Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LCA12A_0827 ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LCA12A_0828 ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LCA12A_1715 SbcC family exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E LCA12A_1714 SbcD family exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LCA12A_0622 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LCA12A_0621 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LCA12A_1597 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LCA12A_1571 DNA-binding protein HBsu K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LCA12A_0940 RecT family recombinational DNA repair protein K07455 recT; recombination protein RecT F LCA12A_0883 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LCA12A_0845 DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F LCA12A_2700 recombination protein K06187 recR; recombination protein RecR F LCA12A_2346 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LCA12A_2370 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LCA12A_1566 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LCA12A_2244 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F LCA12A_0304 excinuclease ABC subunit A related protein K03701 uvrA; excinuclease ABC subunit A F LCA12A_2243 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LCA12A_0781 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LCA12A_2340 DNA repair nucleotidyltransferase/polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D LCA12A_2211 RecA family protein K03553 recA; recombination protein RecA D LCA12A_0315 RecA family protein K03553 recA; recombination protein RecA D LCA12A_1755 SOS-response repressor/protease K01356 lexA; repressor LexA [EC:3.4.21.88] D LCA12A_1249 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LCA12A_0624 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LCA12A_0626 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LCA12A_0937 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LCA12A_0102 RecX family regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LCA12A_0826 DinG family ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LCA12A_1040 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0247 mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0276 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_0467 nudix-related transcriptional regulator K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LCA12A_1849 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LCA12A_1662 ribonucleotide reductase of class Ib (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LCA12A_1663 ribonucleotide reductase of class Ib (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LCA12A_0476 3'-to-5' oligoribonuclease A K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D LCA12A_0783 3'-to-5' oligoribonuclease A K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024