+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria monocytogenes SLCC2479 (serotype 3c)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LMOSLCC2479_1009 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC2479_0595 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMOSLCC2479_1224 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC2479_0392 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC2479_0940 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMOSLCC2479_1753 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMOSLCC2479_1957 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LMOSLCC2479_0156 DNA repair helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LMOSLCC2479_1305 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1684 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_2429 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1755 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LMOSLCC2479_1009 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC2479_0076 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LMOSLCC2479_2308 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D LMOSLCC2479_2307 ogt-2; methylated-DNA-protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC2479_0595 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMOSLCC2479_1224 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC2479_0392 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC2479_0940 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMOSLCC2479_1753 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMOSLCC2479_1703 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LMOSLCC2479_1626 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LMOSLCC2479_1957 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LMOSLCC2479_1846 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LMOSLCC2479_1510 nfo; apurinic endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LMOSLCC2479_1586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LMOSLCC2479_1822 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LMOSLCC2479_1627 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LMOSLCC2479_2549 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E LMOSLCC2479_2550 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E LMOSLCC2479_1231 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E LMOSLCC2479_1823 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMOSLCC2479_1627 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LMOSLCC2479_1822 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LMOSLCC2479_0258 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LMOSLCC2479_0259 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LMOSLCC2479_2672 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LMOSLCC2479_2623 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LMOSLCC2479_1890 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LMOSLCC2479_0214 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LMOSLCC2479_1463 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E LMOSLCC2479_1229 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LMOSLCC2479_1464 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LMOSLCC2479_1421 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LMOSLCC2479_1422 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LMOSLCC2479_1636 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LMOSLCC2479_1380 polC; DNA polymerase III, alpha chain, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LMOSLCC2479_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LMOSLCC2479_1542 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LMOSLCC2479_0161 holB; DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LMOSLCC2479_2782 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LMOSLCC2479_1822 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LMOSLCC2479_1823 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMOSLCC2479_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LMOSLCC2479_2363 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LMOSLCC2479_2586 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LMOSLCC2479_1115 site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LMOSLCC2479_1570 recD; exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LMOSLCC2479_1458 recA; recombination protein K03553 recA; recombination protein RecA E LMOSLCC2479_1594 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LMOSLCC2479_1593 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LMOSLCC2479_1888 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LMOSLCC2479_1709 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMOSLCC2479_1710 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LMOSLCC2479_1458 recA; recombination protein K03553 recA; recombination protein RecA E LMOSLCC2479_0234 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LMOSLCC2479_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E LMOSLCC2479_1875 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LMOSLCC2479_1586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LMOSLCC2479_1521 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) E LMOSLCC2479_2780 recR; recombination protein K06187 recR; recombination protein RecR E LMOSLCC2479_1428 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LMOSLCC2479_1954 recU-1; recombination protein U K03700 recU; recombination protein U E LMOSLCC2479_2361 recU-2; recombination protein U K03700 recU; recombination protein U E LMOSLCC2479_1594 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LMOSLCC2479_1593 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LMOSLCC2479_2331 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LMOSLCC2479_2332 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LMOSLCC2479_1709 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMOSLCC2479_1710 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LMOSLCC2479_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LMOSLCC2479_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LMOSLCC2479_1335 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LMOSLCC2479_1997 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LMOSLCC2479_1586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LMOSLCC2479_1521 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) F LMOSLCC2479_2780 recR; recombination protein K06187 recR; recombination protein RecR F LMOSLCC2479_1822 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LMOSLCC2479_2006 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMOSLCC2479_2835 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMOSLCC2479_2549 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F LMOSLCC2479_2550 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LMOSLCC2479_2038 dinP; DNA-damage-inducible DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LMOSLCC2479_2742 putative DNA polymerase IV 2 K03502 umuC; DNA polymerase V D LMOSLCC2479_2748 DNA-repair protein, umuC like K03502 umuC; DNA polymerase V C Other SOS response factors D LMOSLCC2479_1458 recA; recombination protein K03553 recA; recombination protein RecA D LMOSLCC2479_1362 lexA; SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LMOSLCC2479_1428 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LMOSLCC2479_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LMOSLCC2479_2363 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LMOSLCC2479_2586 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LMOSLCC2479_1757 recX; regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D LMOSLCC2479_1228 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D LMOSLCC2479_1962 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LMOSLCC2479_1305 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1684 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_2429 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC2479_1755 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LMOSLCC2479_2220 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LMOSLCC2479_2219 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LMOSLCC2479_1637 RecJ-like phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024