+E Transcription factors KO
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Transcription Factors - Lysinibacillus sp. B2A1
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D C3943_21740 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C3943_07485 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C3943_07800 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D C3943_01230 AraC family transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D C3943_25335 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_25705 hypothetical protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_09290 hypothetical protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_09330 hypothetical protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_01170 Fe3+-hydroxamate ABC transporter substrate-binding protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_01175 Fe3+-hydroxamate ABC transporter substrate-binding protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_01200 Fe3+-hydroxamate ABC transporter substrate-binding protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C3943_15595 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D C3943_07305 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D C3943_08780 adenosine deaminase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D C3943_07740 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D C3943_21330 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D C3943_07845 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D C3943_25675 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D C3943_19535 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D C3943_00140 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D C3943_15550 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D C3943_26465 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D C3943_07515 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D C3943_26470 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D C3943_06665 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D C3943_03605 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D C3943_05130 transcriptional regulator K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D C3943_12475 transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D C3943_09955 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3943_14715 LacI family transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
C GntR family
D C3943_11630 phosphonate metabolism transcriptional regulator PhnF K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D C3943_01360 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D C3943_06465 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D C3943_20005 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D C3943_10175 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D C3943_15855 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3943_19030 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3943_25135 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3943_09445 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3943_00120 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3943_01920 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D C3943_03080 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D C3943_10035 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D C3943_07620 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D C3943_10605 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D C3943_25440 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D C3943_16880 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D C3943_22940 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D C3943_09180 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C3943_13330 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C3943_16070 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D C3943_10675 DNA-binding response regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D C3943_01640 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D C3943_09830 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D C3943_22585 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D C3943_24070 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D C3943_04775 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D C3943_12360 transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D C3943_09160 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C3943_26625 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C3943_13885 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C3943_14295 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C3943_10395 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D C3943_06825 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D C3943_12750 transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D C3943_19420 MarR family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D C3943_13650 hypothetical protein K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
C Fur family
D C3943_07150 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D C3943_12650 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D C3943_23095 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D C3943_05855 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D C3943_07420 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D C3943_04420 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D C3943_25690 cAMP-binding protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D C3943_01855 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D C3943_16170 transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D C3943_24905 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D C3943_11720 transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D C3943_16610 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C3943_15285 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C3943_16475 transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D C3943_24495 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D C3943_00270 transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D C3943_13945 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D C3943_15585 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D C3943_16710 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D C3943_04345 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D C3943_08695 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C3943_26605 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D C3943_24480 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D C3943_23830 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D C3943_08680 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C3943_00505 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D C3943_20955 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D C3943_07345 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D C3943_24200 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D C3943_06090 GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D C3943_06910 transcriptional regulator K07726 K07726; putative transcriptional regulator
D C3943_11020 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D C3943_19765 transcriptional regulator K07727 K07727; putative transcriptional regulator
D C3943_18505 transcriptional regulator K07727 K07727; putative transcriptional regulator
D C3943_22265 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C3943_16010 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C3943_19180 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C3943_17305 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C3943_07025 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D C3943_24340 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D C3943_00280 CsoR family transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D C3943_19315 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C3943_03015 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C3943_08805 PucR family transcriptional regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D C3943_10780 hypothetical protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D C3943_00460 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D C3943_00550 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D C3943_27025 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3943_27035 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3943_21155 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D C3943_13700 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D C3943_12305 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D C3943_26315 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D C3943_00245 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D C3943_21925 hypothetical protein K05311 cggR; central glycolytic genes regulator
D C3943_08350 trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D C3943_05665 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D C3943_03220 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D C3943_05485 transcriptional regulator K06314 rsfA; prespore-specific regulator
D C3943_08970 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D C3943_15850 protease K07734 paiB; transcriptional regulator
D C3943_20625 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D C3943_10295 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D C3943_04260 competence protein K02250 comK; competence protein ComK
D C3943_04270 hypothetical protein K02250 comK; competence protein ComK
D C3943_05505 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0