+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Mirounga leonina (Southern elephant seal)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 118016443 RNMT; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 118001301 RNGTT; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 118016872 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 118000632 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 118023594 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 118023102 RAMAC; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
E 118013092 RNA guanine-N7 methyltransferase activating subunit-like K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 118017918 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 118011300 NCBP2L; LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
E 118006970 NCBP2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 118023768 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 118008587 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 118015914 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 118015866 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 118004323 PCF11; LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 118015315 CPSF1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 118002673 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118007301 cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118007357 cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118024314 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 117999368 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 118010523 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 118012575 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 118005718 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 118007723 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118016125 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118018468 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118008658 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 118004188 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 118020110 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 118023984 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 118023294 CSTF2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 118012978 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 118015744 CSTF3; cleavage stimulation factor subunit 3 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 117998149 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 118011319 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 117999857 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 118000756 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 118008420 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 118017011 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 117999208 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 118014168 SNRPE; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 118014713 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 118007425 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 118008002 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 118014969 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118022916 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118010331 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118011442 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118011598 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118019179 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118019959 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118020217 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118006293 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118014829 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118021564 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118003006 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 118019684 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 118016047 LSM11; U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 118002673 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118007301 cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118007357 cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118023294 CSTF2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 118012978 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 117998149 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
E 118016683 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 118010799 SLBP; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 118001318 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 118024705 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 118022669 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 118003447 METTL3; N6-adenosine-methyltransferase catalytic subunit isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 118027122 METTL14; N6-adenosine-methyltransferase non-catalytic subunit isoform X1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 118004772 METTL4; N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 118025196 METTL16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 118001857 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 118001975 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 118015029 VIRMA; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 118019019 RBM15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 118005382 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 118009420 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 118020614 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 118008092 PAPOLG; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 118002194 PAPOLA; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117999309 PAPOLB; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 118016941 TENT2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 118015937 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 118012076 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 118009312 RBM26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 118023782 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 118000142 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 118020014 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 118024685 DHX40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 118021600 KIN; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 118012339 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 118021812 METTL22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 118000846 TENT5A; terminal nucleotidyltransferase 5A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 118019824 TENT5B; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 118000468 TENT5C; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 118025955 TENT5D; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 118002207 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 117999433 SRRT; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 118000270 RBM8A; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 118025667 MAGOHB; protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 118019398 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 118024161 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 118027348 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 118024196 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118004969 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 118013744 LOW QUALITY PROTEIN: coiled-coil domain-containing protein 174-like K25178 CCDC174; coiled-coil domain-containing protein 174
E 118024858 CASC3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 118009594 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 118010189 histone deacetylase complex subunit SAP18-like K14324 SAP18; histone deacetylase complex subunit SAP18
E 118017828 histone deacetylase complex subunit SAP18-like K14324 SAP18; histone deacetylase complex subunit SAP18
E 118026713 histone deacetylase complex subunit SAP18-like K14324 SAP18; histone deacetylase complex subunit SAP18
E 118002423 PNN; pinin K13114 PNN; pinin
E 118003463 ACIN1; apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 118021726 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 118004080 LOW QUALITY PROTEIN: RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 118019872 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 118004633 THOC1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 118012547 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 118016930 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 118024161 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 118018629 THOC5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 118021746 THOC6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 118005094 THOC7; THO complex subunit 7 homolog isoform X1 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 118009220 PCID2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 118001023 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 118015128 ENY2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 118023456 transcription and mRNA export factor ENY2-like K11368 ENY2; enhancer of yellow 2 transcription factor
E 118015083 CETN2; centrin-2 isoform X1 K10840 CETN2; centrin-2
E 118008018 LOW QUALITY PROTEIN: centrin-2-like K10840 CETN2; centrin-2
E 118010667 centrin-2-like K10840 CETN2; centrin-2
E 118016988 CETN3; centrin-3 K16466 CETN3; centrin-3
E 118026930 MCM3AP; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 118014404 TPR; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 118023992 RAE1; mRNA export factor K14298 RAE1; mRNA export factor
E 118006015 SEC13; protein SEC13 homolog isoform X1 K14004 SEC13; protein transport protein SEC13
E 117998817 NUP37; nucleoporin Nup37 isoform X1 K14302 NUP37; nuclear pore complex protein Nup37
E 118024275 NUP85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 118001055 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 117998577 NUP50; nuclear pore complex protein Nup50 isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 118010431 NUP54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 118010718 NUP62CL; nucleoporin-62 C-terminal-like protein K14306 NUP62; nuclear pore complex protein Nup62
E 117998289 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 117999946 NUP88; nuclear pore complex protein Nup88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 118023760 NUP93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 118004198 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 118008594 NUP107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 118012884 NUP133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 118017605 NUP188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 117997442 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 118006340 nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 118006467 nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 118015849 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 118012244 NUP35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 118021124 NUP205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 118004918 NUP210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 118013838 NUP210L; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 118017576 NUP214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 118027237 POM121L2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 117999481 nuclear envelope pore membrane protein POM 121C-like isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 118009574 NUP58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 118020863 NUP42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 118019391 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 118008296 RANBP2; E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 118006914 SENP2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 118008793 AAAS; aladin isoform X1 K14320 AAAS; aladin
E 118016988 CETN3; centrin-3 K16466 CETN3; centrin-3
E 118015957 NXF1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 117998978 NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 118011179 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 118012009 NXT2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
E 118026200 nuclear pore-associated protein 1-like K26564 NPAP1; nuclear pore-associated protein 1
D Ran-mediated transport factors
E 118022376 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 118017143 LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 118018364 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 118003681 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 118019479 acidic leucine-rich nuclear phosphoprotein 32 family member A-like K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 118017912 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 118000024 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 118005934 ELAVL1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118018062 ELAVL2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118019436 ELAVL4; ELAV-like protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118005402 ELAVL3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118022329 LOW QUALITY PROTEIN: FAS-associated factor 2-like K18726 FAF2; FAS-associated factor 2
E 118016998 FAF2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 118017985 VCP; transitional endoplasmic reticulum ATPase isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase
E 118002070 VCPKMT; protein-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 118005791 TNPO2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 118008081 XPO1; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 118022066 XPO7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 118016636 RANBP17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 117998637 RANGAP1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 118024633 TAF15; TATA-binding protein-associated factor 2N isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 118015501 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 118010310 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 118011934 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118000027 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 118006923 EIF4A2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 118003964 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 118019921 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118006898 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118008810 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 117999501 EIF4H; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 118009966 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 118018347 eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 118019087 eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 118016724 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 118018673 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118002396 ANGEL1; protein angel homolog 1 K18729 ANGEL; protein angel
E 118014323 ANGEL2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 118000029 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 118008297 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118006786 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118022944 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118016004 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118015863 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 118010797 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118023095 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118023712 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118016905 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118010699 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118009335 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118009396 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118011928 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 117999427 GIGYF1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118022325 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118015077 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118025875 LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118025975 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118026082 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 118011522 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 118019584 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118020543 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 117998980 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 118006339 polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 118006471 polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 118016693 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 118007992 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 118027310 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118016220 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 118012485 MCTS1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 118021625 malignant T-cell-amplified sequence 1-like K07575 MCTS; malignant T-cell-amplified sequence
E 118018413 DENR; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 118025489 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 118012843 A1CF; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 118008737 PYM1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 118022456 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118000798 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118001215 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118008761 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118009476 HNRNPA1L2; heterogeneous nuclear ribonucleoprotein A1-like 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118017295 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118004210 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118004243 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118005205 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118012292 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118012443 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117999072 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118014298 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118009942 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118024715 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118018541 MSI1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 118005992 DAZAP1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118000816 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 118006651 protein pelota homolog K06965 PELO; protein pelota
E 118006777 protein pelota homolog K06965 PELO; protein pelota
E 118023398 PABPN1L; LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 118003365 PABPN1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 118023582 DDX19B; ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 118013373 DDX25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 118005879 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 118008742 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 117999853 SAP domain-containing ribonucleoprotein-like K18732 SARNP; SAP domain-containing ribonucleoprotein
E 118019792 RCC1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 118003599 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 118016708 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 118024507 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 117998604 POLDIP3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 118014166 ZC3H11A; zinc finger CCCH domain-containing protein 11A isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 117997769 LENG8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 118003550 PATL2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 118016687 ETF1; eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 118010483 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 118021840 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 118005640 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118021588 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 118009206 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 118012405 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 118016640 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 118009990 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117998379 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 118013220 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 118022103 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118016779 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118010733 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117997823 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118002828 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118002870 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118004050 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118026663 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118001186 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118016017 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118002322 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118002344 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118014309 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 118021872 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118013904 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 118025197 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118014373 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 118024689 SMG8; protein SMG8 K18734 SMG8; protein SMG8
E 117998090 SMG9; protein SMG9 isoform X1 K18735 SMG9; protein SMG9
E 118011928 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 117999427 GIGYF1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118026376 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 118003590 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 117998199 DHX34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 117998671 GTPBP1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 118026339 PUM3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 118003348 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118003743 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 118004445 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 118025523 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 118026393 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 118003172 EXD1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 118024176 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 117999316 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 118004479 MBP; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 118021532 VIM; vimentin K07606 VIM; vimentin
E 118023762 metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 118019987 metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 118015212 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 118005648 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 117999219 TBX6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 118026941 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 118024000 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 118017583 FUBP3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 118019239 FUBP1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 118005997 KHSRP; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 118001505 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 118001547 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 118024048 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 118019890 elongation factor 1-alpha, somatic form-like K03231 EEF1A; elongation factor 1-alpha
E 118015938 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 118020888 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 118013847 HAX1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 118011972 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 118014927 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118023947 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118020867 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 118006046 PTBP1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 118023095 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118023712 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118016905 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118010699 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 118000029 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 118008297 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118006786 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118022944 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118016004 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118008786 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118020189 LOW QUALITY PROTEIN: poly(rC)-binding protein 2-like K13162 PCBP2; poly(rC)-binding protein 2
E 118026939 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118006025 PCBP4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118015752 CAPRIN1; caprin-1 K18743 CAPRIN1; caprin-1
E 118011264 LOW QUALITY PROTEIN: caprin-1-like K18743 CAPRIN1; caprin-1
E 118025534 CAPRIN2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 118027223 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
E 118019540 YBX1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 117998190 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
E 118000644 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 118004680 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118015242 AGO2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118019694 protein argonaute-3-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118019695 protein argonaute-1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118019697 protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118015501 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 118010310 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 118011934 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118005640 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118009335 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118009396 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118013293 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118023115 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118004394 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118005342 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118013763 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118026803 FASTK; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 118022721 LSM14A; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 118024025 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 118008007 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 118008786 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118020189 LOW QUALITY PROTEIN: poly(rC)-binding protein 2-like K13162 PCBP2; poly(rC)-binding protein 2
E 118027223 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
E 118019540 YBX1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 117998190 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
E 118000644 LOW QUALITY PROTEIN: Y-box-binding protein 1-like K09276 YBX1; Y-box-binding protein 1
E 118022709 WTIP; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 118003119 AJUBA; LIM domain-containing protein ajuba isoform X1 K16682 AJUBA; LIM domain-containing protein
E 118005961 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 118025489 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 118026594 DNA dC->dU-editing enzyme APOBEC-3G-like isoform X1 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 117998666 DNA dC->dU-editing enzyme APOBEC-3-like isoform X1 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 118018991 MOV10; helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 118019880 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 118016890 TNPO1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 118021872 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118013904 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 118025197 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118014373 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 118022672 ZFP36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 118008197 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 118002587 ZFP36L1; mRNA decay activator protein ZFP36L1 isoform X1 K18753 ZFP36L; butyrate response factor
E 118001263 LIN28B; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 118020292 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 118010767 HTT; huntingtin isoform X1 K04533 HD; huntingtin
E 118025535 IPO8; importin-8 K18755 IPO8; importin-8
E 118019423 protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 118019903 protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 118022456 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118000798 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118001215 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118008761 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118009476 HNRNPA1L2; heterogeneous nuclear ribonucleoprotein A1-like 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118017295 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118004210 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118004243 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118005205 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118012292 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118012443 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117999072 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118014298 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118009942 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118005070 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118019227 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118022331 LARP1B; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 118015828 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 118018473 ATXN2; LOW QUALITY PROTEIN: ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
E 117999653 ATXN2L; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 118017495 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118005940 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 118025808 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118009963 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118027324 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 117999936 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118007776 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118009382 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118003427 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118004646 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118005492 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118020688 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118005132 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118009577 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118020940 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118022271 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118005336 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118020553 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 118001187 KLC4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 118016083 KLC2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 118002576 KLC1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 117998137 KLC3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 118003348 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118003743 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 118004445 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 118008882 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 118008883 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 118008885 TUBA1C; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 118025829 TUBA8; tubulin alpha-8 chain isoform X1 K07374 TUBA; tubulin alpha
E 118012024 tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 118014190 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 117999803 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 117999807 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 118021622 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 118023095 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118023712 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118016905 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118010699 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118015863 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 118010797 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118024217 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 117998649 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 117999117 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118023720 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118008572 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117997771 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118021122 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 118010419 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118026504 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118015842 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118010033 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118022719 GARRE1; uncharacterized protein KIAA0355 homolog isoform X1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 118011938 DIS3L2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 118008708 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118009554 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 118024748 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 118025733 BTG3; protein BTG3 isoform X1 K14443 TOB; protein Tob/BTG
E 118013218 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 117998633 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 117998897 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 118014177 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 118018673 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118015888 PATL1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 118003356 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118023654 EDC4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 117998036 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 118005217 NANOS3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 118021588 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 118009206 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 118012405 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 118004059 TRIM21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 118001504 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 118015955 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 118007769 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 118009523 ZAR1L; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 118010545 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 118024046 YTHDF1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 118019788 YTHDF2; LOW QUALITY PROTEIN: YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 118014863 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 118008003 TIA1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118027039 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118022325 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118015077 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118025875 LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118025975 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 118026082 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 118011522 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 118019584 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118020543 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 117998980 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 118014927 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118023947 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118000029 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 118008297 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118006786 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118024000 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 118005934 ELAVL1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118022156 LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 1-like K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 118006685 ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 118006814 ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 118010442 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 118005193 EIF2A; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 117999291 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 118000027 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 118006923 EIF4A2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 118024196 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118008810 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 118003964 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 118019921 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118006898 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118001843 ribosomal protein S6 kinase alpha-2-like isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118001950 ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118026062 RPS6KA6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118019834 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118007563 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118026498 RACK1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 118017503 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 118015957 NXF1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 117998978 NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 118010082 HDAC6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 118009350 TDRD3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 118008856 LARP4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 118021637 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 118005940 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 118025808 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118017495 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118013293 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118003356 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118023654 EDC4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 118015888 PATL1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 118009963 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118027324 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 117999936 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118007776 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118009382 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118003427 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118004646 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118005492 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118020688 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118005132 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118009577 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118020940 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118022271 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118005336 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118020553 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 118004680 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118011183 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 118003607 NUDT16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 118013384 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 118024418 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 118024392 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 118017582 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 118017935 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 118015298 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118022631 EXOSC5; exosome complex component RRP46 isoform X1 K12590 RRP46; exosome complex component RRP46
E 118023577 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 118005090 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 118009503 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 118022358 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
E 118026163 exosome complex component RRP45-like K03678 RRP45; exosome complex component RRP45
E 118026165 exosome complex component RRP45-like K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 118009341 DIS3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 118003692 DIS3L; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 118020010 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 118008038 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 118023524 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 118022172 probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 118023801 TENT4B; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118006283 TENT4A; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118017943 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 118016790 MTREX; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 118027310 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118017012 TTC37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 118023139 WDR61; WD repeat-containing protein 61 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 118010419 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118026504 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118023720 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118008572 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117997771 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118021122 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 118015842 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118010033 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118012044 CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 118001509 CNOT10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 118008708 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118009554 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 118001773 poly(A)-specific ribonuclease PNLDC1-like isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 118001890 poly(A)-specific ribonuclease PNLDC1 isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 118021852 PARN; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 118005469 DHX36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 118024748 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 118025733 BTG3; protein BTG3 isoform X1 K14443 TOB; protein Tob/BTG
E 118013218 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 117998633 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 117998897 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 118014177 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 118017173 CSF2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 118022315 NOCT; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 118010007 ERI1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 117999164 ERI2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 118013384 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 118005790 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 118023140 IREB2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 118024418 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 118024053 HELZ2; LOW QUALITY PROTEIN: helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 118002371 NRDE2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 118002244 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 118022673 SAMD4B; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 117999022 FOCAD; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 118003098 RNASE1; ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 118002923 RNASE4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 118003237 LOW QUALITY PROTEIN: ribonuclease K6-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 118003452 ribonuclease 7-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 118003391 RNASE11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 118001516 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 118019676 ZC3H12A; endoribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 118013203 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 118014241 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 118006281 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 118013256 REXO2; oligoribonuclease, mitochondrial isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 117999954 ENO3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118025720 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118020040 ENO1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118008105 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 118008908 PFKM; ATP-dependent 6-phosphofructokinase, muscle type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118026957 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118021633 PFKP; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 118016688 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 118012180 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 118017582 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 118024392 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 118015298 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118005090 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024