+F Repair protein KO
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DNA Repair and Recombination Proteins - Medicago truncatula (barrel medic)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 11412086 DNA oxidative demethylase ALKBH2 isoform X2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 11425401 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 11429370 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 25492828 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 25492830 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 25492833 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 11446465 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 25500763 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 25479885 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 25479887 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 11411506 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 11405585 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 11434742 endonuclease III homolog 2, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 25492651 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 11443192 DNA-(apurinic or apyrimidinic site) endonuclease 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 25489857 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 11437014 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 11408397 DNA polymerase delta subunit 3 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 25485289 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
F 25493347 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
F 25493349 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 11445193 DNA polymerase epsilon catalytic subunit A isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 25496685 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 25492285 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 25490757 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 11412823 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 25492370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 11442049 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 11437867 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 11415306 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 25497280 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 11418046 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 25498091 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 25499226 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 25484752 poly [ADP-ribose] polymerase 2 isoform X1 K28005 PARP2; poly [ADP-ribose] polymerase 2 [EC:2.4.2.30]
E 11444603 protein ADP-ribosyltransferase PARP3 K10798 PARP3_4; protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 11436447 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 25485511 ubiquitin receptor RAD23c K10839 RAD23; UV excision repair protein RAD23
F 25488002 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 25499820 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 11413962 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 25492127 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 11437813 cullin-4 K10609 CUL4; cullin 4
F 11435521 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 11405495 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 25486505 uncharacterized protein LOC25486505 K15082 RAD7; DNA repair protein RAD7
F 25494176 uncharacterized protein LOC25494176 K15082 RAD7; DNA repair protein RAD7
F 25494178 uncharacterized protein LOC25494178 isoform X1 K15082 RAD7; DNA repair protein RAD7
F 11443944 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 11434004 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 11428063 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 11444055 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 11416659 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 11418894 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 11407830 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11419143 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11426241 DNA-directed RNA polymerases II and IV subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11436782 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11437228 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11438657 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11442775 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 120579378 DNA-directed RNA polymerases IV and V subunit 5B K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 25489110 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 11444744 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 25479674 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 11407767 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 11441441 DNA-directed RNA polymerases II and V subunit 8A K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 11442457 DNA-directed RNA polymerases II and V subunit 8A K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 25483690 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 11417477 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 11405864 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 25492856 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 25491968 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 25495119 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 112416233 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 25498670 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 11413962 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 25492127 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 11437813 cullin-4 K10609 CUL4; cullin 4
F 11435521 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 25489968 WD repeat-containing protein ATCSA-1 isoform X2 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 25484243 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 25499736 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 25493060 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 25502076 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 25487506 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 11406928 general transcription and DNA repair factor IIH subunit TFB1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 25496637 general transcription and DNA repair factor IIH subunit TFB1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 11417626 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 11419054 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 11406173 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 25493180 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 11406059 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 11411289 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 25489030 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 25496775 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 11415666 cyclin-H1-1 K06634 CCNH; cyclin H
E 11434892 CDK-activating kinase assembly factor MAT1 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 112421905 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 25486480 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 25493890 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 11446020 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 25481878 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 11433064 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485573 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485575 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 11412075 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 11442992 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 25498004 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 25492370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 11432373 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 11433364 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 11427181 protein CIA1 K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 11412139 protein AE7-like 1 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 11412856 protein AE7 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 11408876 cullin-3A K03869 CUL3; cullin 3
E 11410449 cullin-3A K03869 CUL3; cullin 3
E 11411434 cullin-3A K03869 CUL3; cullin 3
E 11417557 LOW QUALITY PROTEIN: cullin-3B K03869 CUL3; cullin 3
E 11427751 cullin-3A K03869 CUL3; cullin 3
E 120580095 cullin-3A-like K03869 CUL3; cullin 3
E 25482923 cullin-3A K03869 CUL3; cullin 3
E 25482929 cullin-3A-like K03869 CUL3; cullin 3
E 25495296 cullin-3A K03869 CUL3; cullin 3
E 25495298 cullin-3A-like K03869 CUL3; cullin 3
E 25498090 cullin-3B K03869 CUL3; cullin 3
E 25498104 cullin-3A K03869 CUL3; cullin 3
E 25492546 elongin-C K03872 ELOC; elongin-C
E 25486618 polyubiquitin 9 K03873 ELOB; elongin-B
E 11420679 uncharacterized protein LOC11420679 K15077 ELA1; elongin-A
E 11431234 transcription elongation factor B polypeptide 3-like K15077 ELA1; elongin-A
E 11434377 transcription elongation factor B polypeptide 3 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 25493936 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 25485081 DNA mismatch repair protein MSH3 isoform X3 K08736 MSH3; DNA mismatch repair protein MSH3
E 11432526 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 11436735 DNA mismatch repair protein MSH7 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 11419396 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 11414900 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 11424785 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 25489857 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 11437014 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 11408397 DNA polymerase delta subunit 3 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 25485289 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E 25493347 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E 25493349 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 112421905 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 25486480 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 25493890 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 11446020 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 25481878 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 11433064 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485573 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485575 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 25492173 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 11414806 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 25493662 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 11414029 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 11429308 uncharacterized protein LOC11429308 K10756 RFC3_5; replication factor C subunit 3/5
E 120575764 uncharacterized protein LOC120575764 K10756 RFC3_5; replication factor C subunit 3/5
E 25495823 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 25497284 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 25490757 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 11411391 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 25480322 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 25492370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 25493977 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 11436847 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 11435676 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 11436414 nijmegen breakage syndrome 1 protein isoform X2 K10867 NBN; nibrin
D BRCA1-core complex
E 11444771 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 25486045 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X2 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 25489640 BRISC and BRCA1-A complex member 1 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 11414408 BRISC and BRCA1-A complex member 2 K12173 BRE; BRCA1-A complex subunit BRE
E 11434784 lys-63-specific deubiquitinase BRCC36 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 25482228 Fanconi anemia group J protein homolog isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 11412949 BRCT domain-containing protein At4g02110 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 11414828 uncharacterized protein LOC11414828 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 25482443 DNA topoisomerase 2-binding protein 1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 11436847 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 11435676 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 11436414 nijmegen breakage syndrome 1 protein isoform X2 K10867 NBN; nibrin
D BRCA complex
E 11435666 protein BREAST CANCER SUSCEPTIBILITY 2 homolog A isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 25480600 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 25495886 LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 11418607 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 11418607 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 11419094 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 11434081 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 11446586 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 25492474 DNA repair protein RAD51 homolog 4 isoform X2 K10871 RAD51L3; RAD51-like protein 3
E 25492821 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 25488274 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 11421459 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 25495088 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 11408204 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 11435042 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 11441869 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 120578623 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25488181 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25493137 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25494466 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25497866 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25498158 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25499904 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25499905 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25499907 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25499908 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 25501071 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 11408014 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 11409950 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 11415668 ATP-dependent DNA helicase Q-like SIM isoform X2 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 11419769 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 11446659 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 25501716 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 11419769 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 11446659 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 11428648 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 11437293 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 25502001 recQ-mediated genome instability protein 1 isoform X2 K10990 RMI1; RecQ-mediated genome instability protein 1
E 25492345 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 112421905 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 25486480 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 25493890 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 11446020 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 25481878 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 11433064 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485573 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 25485575 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 11426801 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 11441662 serine/threonine-protein phosphatase 4 regulatory subunit 2-A K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 11415143 serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 11422056 serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 11438115 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 25494057 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 11440873 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 11405711 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 11409593 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 11446670 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 11412113 structural maintenance of chromosomes protein 6A isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 25491907 structural maintenance of chromosomes protein 6A K22804 SMC6; structural maintenance of chromosomes protein 6
E 25489594 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 25487298 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 11443476 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 11443787 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 11435572 crossover junction endonuclease EME1B K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 11417347 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 25489539 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 25479421 structure-specific endonuclease subunit slx1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 25491033 structure-specific endonuclease subunit SLX1 homolog K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 11428730 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 11439238 single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 11432180 uncharacterized protein LOC11432180 isoform X1 K19026 SPG11; spatacsin
E 11431983 uncharacterized protein LOC11431983 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 25489912 protein MRG2 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 25493500 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 11406348 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 25495178 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 25495728 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 25495729 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 25495730 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 11408530 zinc finger SWIM domain-containing protein 7 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 25481004 zinc finger SWIM domain-containing protein 7 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 11407596 uncharacterized protein LOC11407596 isoform X1 K27803 HROB; homologous recombination OB-fold protein
E 11434746 probable DNA helicase MCM8 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 11430751 probable DNA helicase MCM9 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 25488016 DNA-dependent metalloprotease WSS1 homolog isoform X2 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 25489116 uncharacterized protein LOC25489116 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 25502758 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 11433338 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 11441760 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 11423056 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 11436847 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 11435676 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 11441582 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 11419613 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 11418046 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 25498091 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 11415306 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 11442699 uncharacterized protein LOC11442699 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 11433315 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X2 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E 11434186 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X2 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 25485169 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 11435055 protein MHF1 homolog K11511 APITD1; centromere protein S
E 25493681 protein MHF2 homolog isoform X2 K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 11419769 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 11446659 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 11428648 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 11437293 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 25502001 recQ-mediated genome instability protein 1 isoform X2 K10990 RMI1; RecQ-mediated genome instability protein 1
E 25492345 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 11435666 protein BREAST CANCER SUSCEPTIBILITY 2 homolog A isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 25480600 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 25495886 LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 25482228 Fanconi anemia group J protein homolog isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 11446824 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 11418607 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 11434081 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 11446586 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 25489500 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 11433323 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
E 25484665 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 11424262 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 11408739 serine/threonine-protein phosphatase 6 regulatory subunit 3 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 11416078 serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 11425373 telomerase Cajal body protein 1 isoform X2 K23314 WRAP53; telomerase Cajal body protein 1
E 11444777 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 25493977 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 25493444 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 11437908 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 25494478 DNA repair protein REV1 isoform X3 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 11431309 DNA polymerase zeta catalytic subunit isoform X2 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 11444344 ubiquitin-conjugating enzyme E2 2 isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 25502755 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 25483011 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 25487494 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 11408938 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 11411155 ubiquitin-conjugating enzyme E2 variant 1B K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 25483759 ubiquitin-conjugating enzyme E2 variant 1C isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 120575836 ubiquitin-conjugating enzyme E2 36-like isoform X1 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 25487247 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 25490757 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 11421369 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 11408723 uncharacterized protein LOC11408723 K10903 HUS1; HUS1 checkpoint protein
D 25502451 uncharacterized protein LOC25502451 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 11438038 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 11414806 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 25493662 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 11414029 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 11429308 uncharacterized protein LOC11429308 K10756 RFC3_5; replication factor C subunit 3/5
D 120575764 uncharacterized protein LOC120575764 K10756 RFC3_5; replication factor C subunit 3/5
D 25495823 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 25497284 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 25502451 uncharacterized protein LOC25502451 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 11424152 protein timeless homolog isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 112421389 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 25489500 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 11423618 uncharacterized protein LOC11423618 K20403 TTI1; TELO2-interacting protein 1
D 11408197 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 11438188 ubiquitin-like domain-containing protein CIP73 isoform X2 K23390 BAG6; large proline-rich protein BAG6
D 11407001 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 11440718 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 11443014 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 11406150 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 11410442 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 11420882 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 11424391 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 11432749 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 11434284 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 11443937 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 25480430 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 25485955 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 25487782 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 11430691 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 11432048 uncharacterized protein LOC11432048 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 11428196 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 11429742 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 25483365 serine/threonine-protein kinase Nek4 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 25484648 serine/threonine-protein kinase Nek2 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 25492218 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 25499156 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 25497873 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 25499530 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 11412911 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 11443598 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 11446229 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 11431773 replication stress response regulator SDE2 K25059 SDE2; replication stress response regulator SDE2
D 11436126 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 11430570 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 11419794 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 11438769 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D 11439705 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 11423063 5' exonuclease Apollo K15340 DCLRE1A; DNA cross-link repair 1A protein
D 11433501 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 11439525 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 25480801 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 25483430 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 11410049 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 11429729 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 25481900 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 120579634 DNA annealing helicase and endonuclease ZRANB3 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 11419817 endonuclease 1 isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 11424647 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 11444005 endonuclease 4 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 120580720 endonuclease 4-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 25492904 LOW QUALITY PROTEIN: switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 11431087 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 11429105 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 25499707 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 11414393 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 25488112 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 11428860 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 25489181 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 11438405 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 25488510 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 25480771 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 25483253 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 25494012 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 25497818 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 25502786 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 11429370 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 25492828 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 25492830 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 25492833 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 11416684 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 25490192 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 11446465 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 25500763 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 11425230 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 11433926 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 11439558 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 11445011 uncharacterized protein LOC11445011 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 25479532 DNA-3-methyladenine glycosylase 1 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 25490178 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 25502437 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 11435290 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 11405585 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 11434742 endonuclease III homolog 2, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 25492651 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 25483315 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 11436067 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 11444264 DNA polymerase I A, chloroplastic/mitochondrial isoform X2 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 11444798 DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 11436067 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 11444264 DNA polymerase I A, chloroplastic/mitochondrial isoform X2 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 11444798 DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 120580065 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 5333159 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 120579359 DNA-directed RNA polymerase subunit beta'-like K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 120579890 DNA-directed RNA polymerase subunit beta'' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 120580069 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 5333131 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 5333185 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 120580176 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 5333122 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 25493177 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 11446584 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 11440646 DNA repair protein recA homolog 3, mitochondrial isoform X2 K03553 recA; recombination protein RecA
E 25494222 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 25502471 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 11440646 DNA repair protein recA homolog 3, mitochondrial isoform X2 K03553 recA; recombination protein RecA
E 25494222 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 25502471 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 11424963 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E 11427154 DNA repair protein RadA isoform X1 K04485 radA; DNA repair protein RadA/Sms
E 11422507 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E 25489600 LOW QUALITY PROTEIN: ATP-dependent DNA helicase homolog RECG, chloroplastic-like K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 11429265 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 11427804 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 25489175 probable ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 11440646 DNA repair protein recA homolog 3, mitochondrial isoform X2 K03553 recA; recombination protein RecA
D 25494222 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 25502471 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 11446584 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 11428860 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 25489181 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: December 23, 2024