+F Repair protein KO
#
DNA Repair and Recombination Proteins - Nicotiana tomentosiformis
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 104106475 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 104087346 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 104095301 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 104108690 uracil-DNA glycosylase, mitochondrial isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 104098902 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 104103901 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 104096628 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 104113783 uncharacterized protein LOC104113783 isoform X2 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 104104518 uncharacterized protein LOC104104518 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 104111954 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 104085871 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104085977 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104119939 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 104087768 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 104089413 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 104110908 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
F 104120725 uncharacterized protein LOC104120725 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 104102128 uncharacterized protein LOC104102128 K03505 POLD4; DNA polymerase delta subunit 4
F 104101704 uncharacterized protein LOC104101704 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 104119602 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 104108828 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 104099883 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 104115294 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104108823 flap endonuclease 1-A isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 104086304 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 104114940 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 104115126 tyrosyl-DNA phosphodiesterase 1-like isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 104118789 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 104095112 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 104115768 DNA polymerase beta isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 104110048 poly [ADP-ribose] polymerase 1 isoform X2 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 104093734 poly [ADP-ribose] polymerase 3-like isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 104115188 poly [ADP-ribose] polymerase 3-like isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 104110259 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 104087008 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 104113830 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 104108368 ubiquitin receptor RAD23b isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 104093728 ubiquitin receptor RAD23c-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 104094311 ubiquitin receptor RAD23b-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 104120973 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 104101785 ubiquitin receptor RAD23d-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 104104527 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104120680 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104092250 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104094909 cullin-4 K10609 CUL4; cullin 4
F 104084911 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 104111780 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 104094825 uncharacterized protein LOC104094825 isoform X1 K15082 RAD7; DNA repair protein RAD7
F 104099202 uncharacterized protein LOC104099202 K15082 RAD7; DNA repair protein RAD7
F 104118403 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
F 104113252 DNA repair protein RAD16-like K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 104091054 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 104099860 DNA-directed RNA polymerase II subunit RPB2 isoform X1 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 104113800 DNA-directed RNA polymerase II subunit 2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 104099688 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 104110055 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 104085595 DNA-directed RNA polymerase II subunit 4 isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 104092114 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 104099840 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104101166 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104103735 DNA-directed RNA polymerase V subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104112086 DNA-directed RNA polymerases II and V subunit 6B-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 104109370 DNA-directed RNA polymerases II, IV and V subunit 6A-like isoform X1 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 104092980 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 104087420 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 104085507 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 104085894 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 104108784 DNA-directed RNA polymerases II and V subunit 8A isoform X8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 104102070 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 104104682 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 104120733 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 104101656 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 104120059 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 104104527 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104120680 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104092250 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104094909 cullin-4 K10609 CUL4; cullin 4
F 104084911 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 104115312 DNA excision repair protein ERCC-8-like isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 104102344 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 104101684 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 104086563 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 104088826 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 104093377 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 104118031 DNA repair helicase XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 104087265 DNA repair helicase XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 104085185 DNA repair helicase XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 104110078 DNA repair helicase XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 104097189 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 104120729 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 104117023 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 104092879 RNA polymerase II transcription factor B subunit 2-like isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 104120960 RNA polymerase II transcription factor B subunit 2-like isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 104086689 RNA polymerase II transcription factor B subunit 5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 104088267 cyclin-dependent kinase D-3-like isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 104112255 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 104100030 cyclin-H1-1-like isoform X1 K06634 CCNH; cyclin H
E 104086130 uncharacterized protein LOC104086130 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 104108817 replication protein A 70 kDa DNA-binding subunit A isoform X1 K07466 RFA1; replication factor A1
E 104112738 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 104091413 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104086778 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 104100873 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 104089408 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 104085126 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 104099494 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 104119566 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 104085958 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 104086304 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 104120863 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 104102666 MMS19 nucleotide excision repair protein homolog K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 104114345 cullin-3A-like isoform X1 K03869 CUL3; cullin 3
E 104098734 cullin-3A K03869 CUL3; cullin 3
E 104084709 transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E 104106138 uncharacterized protein LOC104106138 isoform X3 K03873 ELOB; elongin-B
E 104084630 uncharacterized protein LOC104084630 K03873 ELOB; elongin-B
E 104098749 uncharacterized protein LOC104098749 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 104117972 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 104091927 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 104119443 DNA mismatch repair protein MSH7 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
E 104093899 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 104100372 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 104093919 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 104100730 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 104089413 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 104110908 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
E 104120725 uncharacterized protein LOC104120725 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 104102128 uncharacterized protein LOC104102128 K03505 POLD4; DNA polymerase delta subunit 4
E 104101704 uncharacterized protein LOC104101704 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 104108817 replication protein A 70 kDa DNA-binding subunit A isoform X1 K07466 RFA1; replication factor A1
E 104112738 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 104091413 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104086778 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 104100873 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 104089408 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 104085126 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 104117534 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 104113043 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 104111958 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
E 104114963 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 104108326 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 104119873 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 104119129 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 104115362 uncharacterized protein LOC104115362 K10756 RFC3_5; replication factor C subunit 3/5
E 104119087 uncharacterized protein LOC104119087 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 104115294 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104095653 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 104099218 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 104086304 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 104120496 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 104106887 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 104120026 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 104117807 BRCA1-associated RING domain protein 1-like K10683 BARD1; BRCA1-associated RING domain protein 1
E 104095287 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 104100008 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 104088300 uncharacterized protein LOC104088300 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 104109120 uncharacterized protein LOC104109120 isoform X1 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 104102240 BRCA1-A complex subunit BRE K12173 BRE; BRCA1-A complex subunit BRE
E 104119253 uncharacterized protein LOC104119253 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 104116984 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 104108801 BRCT domain-containing protein At4g02110-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 104099658 DNA topoisomerase 2-binding protein 1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 104108747 BRCT domain-containing protein At4g02110-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 104106887 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 104120026 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA complex
E 104091081 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 104105092 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 104105092 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 104116714 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 104092678 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 104090592 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 104089066 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 104099056 DNA repair protein XRCC3 homolog isoform X2 K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 104095215 uncharacterized protein LOC104095215 K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 104105746 uncharacterized protein LOC104105746 K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 104111183 SNF2 domain-containing protein CLASSY 4 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104111275 protein CHROMATIN REMODELING 35 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104089630 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104090879 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 104089687 mediator of RNA polymerase II transcription subunit 34-like K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 104090477 mediator of RNA polymerase II transcription subunit 34 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 104105527 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 104119321 ATP-dependent DNA helicase Q-like SIM isoform X2 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 104095803 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104104000 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104086865 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 104095803 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104104000 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104113552 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104111577 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104096789 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 104116571 uncharacterized protein LOC104116571 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 104108817 replication protein A 70 kDa DNA-binding subunit A isoform X1 K07466 RFA1; replication factor A1
E 104112738 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 104091413 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104086778 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 104100873 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 104089408 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 104085126 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 104088408 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 104102062 serine/threonine-protein phosphatase 4 regulatory subunit 2-A isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 104091823 serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 104091513 uncharacterized protein LOC104091513 K19022 AP5B1; AP-5 complex subunit beta-1
E 104085257 AP-5 complex subunit mu isoform X1 K19023 AP5M1; AP-5 complex subunit mu-1
E 104121703 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 104106131 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 104106376 structural maintenance of chromosomes protein 6B-like isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 104109476 non-structural maintenance of chromosomes element 1 homolog isoform X1 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 104088813 E3 SUMO-protein ligase MMS21 isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 104104758 non-structural maintenance of chromosomes element 4 homolog A-like isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 104110522 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 104096621 crossover junction endonuclease EME1B-like isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 104120677 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 104102256 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 104096198 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 108942799 structure-specific endonuclease subunit SLX1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 104097520 uncharacterized protein LOC104097520 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 104107346 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 104091926 flap endonuclease GEN-like 2 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 104091664 uncharacterized protein LOC104091664 isoform X1 K19026 SPG11; spatacsin
E 104086060 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 104103136 protein MRG1-like isoform X2 K11339 MORF4L1; mortality factor 4-like protein 1
E 104098910 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X4 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 104114191 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 104095785 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 104115939 zinc finger SWIM domain-containing protein 7 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 104102548 Werner Syndrome-like exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 104107040 LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 104113330 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 104094917 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 104094184 single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1 K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 104106965 ATP-dependent DNA helicase 2 subunit KU70 isoform X1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 104099587 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 104106887 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E 104106827 DNA ligase 4 isoform X1 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 104098833 DNA repair protein XRCC4-like isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 104115768 DNA polymerase beta isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 104118789 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 104106253 uncharacterized protein LOC104106253 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 104101890 uncharacterized protein LOC104101890 isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 104100173 E3 ubiquitin-protein ligase FANCL isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 104111741 Fanconi anemia group M protein homolog isoform X2 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 104085854 centromere protein S K11511 APITD1; centromere protein S
E 104092086 uncharacterized protein LOC104092086 K15360 STRA13; centromere protein X
E 104089928 uncharacterized protein LOC104089928 isoform X1 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 104095803 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104104000 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104113552 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104111577 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104096789 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 104116571 uncharacterized protein LOC104116571 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 104107774 Fanconi anemia group D2 protein homolog isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 104111078 Fanconi anemia group I protein K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 104091081 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 104116984 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 104089178 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 104105092 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 104092678 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 104112628 telomere length regulation protein TEL2 homolog isoform X1 K11137 TELO2; telomere length regulation protein
E 104095832 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
E 104103489 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 104116339 phytochrome-associated serine/threonine-protein phosphatase-like K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 104105630 phytochrome-associated serine/threonine-protein phosphatase 3 isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 104085480 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 104089171 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 104106261 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 104109592 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 104110441 telomerase Cajal body protein 1-like K23314 WRAP53; telomerase Cajal body protein 1
E 104105891 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 104120496 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 104092245 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 104093115 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 104106518 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 104116622 DNA polymerase zeta catalytic subunit isoform X3 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 104108101 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104087162 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104096512 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104089906 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104121614 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104114520 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 104087055 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 104103015 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 104112591 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104095618 ubiquitin-conjugating enzyme E2 variant 1B-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104117231 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104109021 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104115417 ubiquitin-conjugating enzyme E2 variant 1D isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104094701 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 104099498 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 104115294 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 104102150 cell cycle checkpoint control protein RAD9A isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 104112271 uncharacterized protein LOC104112271 K10903 HUS1; HUS1 checkpoint protein
D 104112045 uncharacterized protein LOC104112045 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 104105874 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 104113043 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 104111958 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
D 104114963 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 104108326 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 104119873 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 104119129 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 104115362 uncharacterized protein LOC104115362 K10756 RFC3_5; replication factor C subunit 3/5
D 104119087 uncharacterized protein LOC104119087 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 104112045 uncharacterized protein LOC104112045 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 104118306 protein timeless homolog isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 104098344 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 104112628 telomere length regulation protein TEL2 homolog isoform X1 K11137 TELO2; telomere length regulation protein
D 104085544 uncharacterized protein LOC104085544 K20403 TTI1; TELO2-interacting protein 1
D 104087668 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 104100027 large proline-rich protein BAG6 isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 104107956 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
D 104121006 Golgi to ER traffic protein 4 homolog isoform X1 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 104085701 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 104114108 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 104086755 14-3-3-like protein F K06630 YWHAE; 14-3-3 protein epsilon
D 104106415 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 104088948 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 104098564 14-3-3 protein 7-like K06630 YWHAE; 14-3-3 protein epsilon
D 104085889 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 104117205 14-3-3 protein 9-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 108946625 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 104103523 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 104107096 14-3-3 protein 8 isoform X2 K06630 YWHAE; 14-3-3 protein epsilon
D 104114431 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 104113564 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 104109794 14-3-3 protein 4 K06630 YWHAE; 14-3-3 protein epsilon
D 104121088 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 104084811 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 104121663 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 104107992 14-3-3 protein 4-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 104111658 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 104117927 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 104115175 uncharacterized protein LOC104115175 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 104102534 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104103791 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104086473 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104118864 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104120110 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104086669 serine/threonine-protein kinase Nek6 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104116857 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104093666 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 104105227 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 104107174 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 104108179 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 104093735 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 104098413 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 104095676 protein DECREASED SIZE EXCLUSION LIMIT 1-like isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 104094445 DNA polymerase V-like K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 104095205 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 104086333 uncharacterized protein LOC104086333 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104089784 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104116516 5' exonuclease Apollo isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104106150 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 104089963 exonuclease V, chloroplastic isoform X1 K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 104094303 endonuclease V isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 104121629 DNA annealing helicase and endonuclease ZRANB3-like K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 104085599 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 104097287 endonuclease 2-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 104085600 endonuclease 4-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 104114240 endonuclease 2-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 104121471 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 104091116 pre-mRNA-processing factor 19 homolog 1-like isoform X1 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 104094646 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 104121283 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 104103478 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 104091754 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 104092375 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 104094003 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 104091653 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 104093706 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 104098261 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 104091603 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 104111756 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 104112191 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 104095301 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 104108690 uracil-DNA glycosylase, mitochondrial isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 104097282 DNA-3-methyladenine glycosylase 1-like K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 104097283 DNA-3-methyladenine glycosylase 1-like K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 104097483 DNA-3-methyladenine glycosylase 1-like K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 104098902 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 104103901 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 104119276 dual specificity protein kinase splA-like K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104091486 uncharacterized protein LOC104091486 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104102318 uncharacterized protein LOC104102318 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104115865 uncharacterized protein LOC104115865 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104089024 uncharacterized protein LOC104089024 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104110152 uncharacterized protein LOC104110152 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104110244 uncharacterized protein LOC104110244 isoform X2 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104119852 uncharacterized protein LOC104119852 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104089941 uncharacterized protein LOC104089941 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104087655 uncharacterized protein LOC104087655 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104107940 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 104085871 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104085977 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104119939 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 104093736 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 104095958 LOW QUALITY PROTEIN: DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 104104074 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 104095958 LOW QUALITY PROTEIN: DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 104104074 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 3776378 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 3776380 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3776379 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 108945874 uncharacterized protein LOC108945874 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3776300 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 104092013 uncharacterized protein LOC104092013 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 104104081 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 104120078 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 104121604 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 104120078 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 104121604 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 104116209 uncharacterized protein LOC104116209 K04485 radA; DNA repair protein RadA/Sms
E 104092979 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 104109414 DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 104088912 DNA gyrase subunit B, chloroplastic/mitochondrial isoform X1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 104119820 uncharacterized protein LOC104119820 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 104120078 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 104121604 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 104104081 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 104091653 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 104093706 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 104098261 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024