+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Oryza sativa japonica (Japanese rice)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 4344818 OsJ_26261; mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 4330921 mRNA cap guanine-N7 methyltransferase 2 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 4351709 uncharacterized protein K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 4350086 uncharacterized protein K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 4338689 CAK-R2; cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 4332822 ABH1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 4329963 CBP20; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 4337444 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 4345502 pre-mRNA cleavage factor Im 25 kDa subunit 1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 4345901 uncharacterized protein K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 4347363 uncharacterized protein K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 4328733 P0027A02.1; protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 4347878 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 4344833 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 9266269 probable cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 4347905 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 4334816 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 4341840 OsC3H45; zinc finger CCCH domain-containing protein 45 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 4325772 flowering time control protein FY K15542 PFS2; polyadenylation factor subunit 2
E 4339488 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 4343770 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 4331166 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 4332369 OJ1364E02.17; serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 4345748 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 4326473 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 4340228 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 4351607 uncharacterized protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 4334149 cleavage stimulation factor subunit 50 K14406 CSTF1; cleavage stimulation factor subunit 1
E 4349923 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 4341950 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 4352587 cleavage stimulation factor subunit 77 K14408 CSTF3; cleavage stimulation factor subunit 3
E 4344390 uncharacterized protein isoform X1 K06100 SYMPK; symplekin
E 4323885 uncharacterized protein isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 9270807 uncharacterized protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 4327991 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 4332206 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 4328158 uncharacterized protein K11097 SNRPE; small nuclear ribonucleoprotein E
E 4344666 uncharacterized protein K11097 SNRPE; small nuclear ribonucleoprotein E
E 4328484 probable small nuclear ribonucleoprotein F isoform X1 K11098 SNRPF; small nuclear ribonucleoprotein F
E 4351052 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 4333092 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 4343870 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 4347905 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 4334816 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 4349923 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 4341950 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 4344390 uncharacterized protein isoform X1 K06100 SYMPK; symplekin
E 4323885 uncharacterized protein isoform X1 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 4343956 transcription elongation factor SPT4 homolog 1 K15171 SUPT4H1; transcription elongation factor SPT4
E 4340446 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 4330284 probable N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 4348759 N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X2 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 4324378 N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 4328120 uncharacterized protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 4341029 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 4348994 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 4340886 nuclear poly(A) polymerase 1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 9268632 nuclear poly(A) polymerase 4 isoform X2 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 4328790 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 9272301 nuclear poly(A) polymerase 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 4344356 nuclear poly(A) polymerase 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 107275815 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 4339293 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 4336384 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 107276010 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 4335690 OsC3H27; zinc finger CCCH domain-containing protein 27 K13192 RBM26; RNA-binding protein 26
E 107281123 RNA demethylase ALKBH10B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 4340053 RNA demethylase ALKBH9B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 112936102 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 4341620 uncharacterized protein isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 9270793 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
D 4346039 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 4337757 OsY14a; rNA-binding protein Y14A K12876 RBM8A; RNA-binding protein 8A
E 4334528 OsY14b; rNA-binding protein Y14B K12876 RBM8A; RNA-binding protein 8A
E 4351998 MAGO2; protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 4344462 MAGO1; protein mago nashi homolog 1 isoform 1 K12877 MAGOH; protein mago nashi
E 4332426 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 4349526 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 4342793 THO complex subunit 4A isoform X3 K12881 THOC4; THO complex subunit 4
E 4340675 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 4345621 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 4351236 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 4326193 AIP2; dEAD-box ATP-dependent RNA helicase 15 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 4326192 AIP1; dEAD-box ATP-dependent RNA helicase 56 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 4326580 EIF4A3A; eukaryotic initiation factor 4A-III homolog A K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 4333273 eIF4A-III; eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 4328127 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 4333834 uncharacterized protein K13114 PNN; pinin
E 4343967 uncharacterized protein K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 4332988 uncharacterized protein K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 4325394 serine/arginine-rich splicing factor SR45 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 4337561 serine/arginine-rich splicing factor SR45 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 4332383 uncharacterized protein isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 4331353 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 4324336 THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 4346657 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 4332426 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 4349526 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 4342793 THO complex subunit 4A isoform X3 K12881 THOC4; THO complex subunit 4
E 4340675 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 4345621 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 4351236 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 4330841 THO complex subunit 5A K13174 THOC5; THO complex subunit 5
E 4346861 THO complex subunit 6 isoform X1 K13175 THOC6; THO complex subunit 6
E 4344717 THO complex subunit 7B isoform X1 K13176 THOC7; THO complex subunit 7
E 4339657 THO complex subunit 7A K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 4346949 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 4325173 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 4327264 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 4327741 transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 4332850 SAC3 family protein C K23719 SAC3; nuclear mRNA export protein SAC3
E 107278765 SAC3 family protein B isoform X1 K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 4330687 nuclear-pore anchor isoform X1 K09291 TPR; nucleoprotein TPR
E 4326570 protein RAE1 K14298 RAE1; mRNA export factor
E 4344798 protein RAE1 K14298 RAE1; mRNA export factor
E 4328228 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 4342827 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 4334673 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 4326176 nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 4342961 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 4324750 nuclear pore complex protein NUP62 K14306 NUP62; nuclear pore complex protein Nup62
E 4336930 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 4332834 nuclear pore complex protein NUP93A K14309 NUP93; nuclear pore complex protein Nup93
E 4351598 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 4351597 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 4325429 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 4331780 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 4351012 nuclear pore complex protein NUP107 K14301 NUP107; nuclear pore complex protein Nup107
E 4332118 nuclear pore complex protein NUP133 K14300 NUP133; nuclear pore complex protein Nup133
E 9269589 uncharacterized protein K14311 NUP188; nuclear pore complex protein Nup188
E 4340842 nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 9266752 nuclear pore complex protein NUP160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 4327063 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 4339346 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 4328655 nuclear pore complex protein NUP205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 4347873 nuclear pore complex protein GP210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 4344328 nuclear pore complex protein NUP214 isoform X2 K14317 NUP214; nuclear pore complex protein Nup214
E 4347240 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 9267365 nuclear pore complex protein NUP58 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 4341994 LIC; zinc finger CCCH domain-containing protein 46 K14321 NUPL2; nucleoporin-like protein 2
E 4330343 uncharacterized protein K14315 NDC1; nucleoporin NDC1
E 4326622 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 4349688 aladin isoform X2 K14320 AAAS; aladin
E 4351405 aladin isoform X2 K14320 AAAS; aladin
E 4329863 mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 4339683 OsRan1; gTP-binding nuclear protein Ran-2 K07936 RAN; GTP-binding nuclear protein Ran
E 4325312 OsRan1; gTP-binding nuclear protein Ran-1 K07936 RAN; GTP-binding nuclear protein Ran
E 9266942 OsRan3; GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 4333677 OsJ_12028; acidic leucine-rich nuclear phosphoprotein 32-related protein 2 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 4349139 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 4331645 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 4348731 cell division control protein 48 homolog E K13525 VCP; transitional endoplasmic reticulum ATPase
E 4339620 uncharacterized protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 4331155 uncharacterized protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 4334849 protein EXPORTIN 1A isoform X1 K14290 XPO1; exportin-1
E 4333453 uncharacterized protein isoform X1 K18460 XPO7; exportin-7
E 4324273 uncharacterized protein isoform X1 K18460 XPO7; exportin-7
E 4339487 RAN GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 4332327 NCBP; eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 4348852 OsJ_31838; eukaryotic translation initiation factor isoform 4E-2 K03259 EIF4E; translation initiation factor 4E
E 4323837 eIF-4E-1; eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 4328286 eIF-4A-3; eukaryotic initiation factor 4A-3 K03257 EIF4A; translation initiation factor 4A
E 4341966 eIF-4A-1; eukaryotic initiation factor 4A-1 K03257 EIF4A; translation initiation factor 4A
E 4328756 uncharacterized protein isoform X2 K03257 EIF4A; translation initiation factor 4A
E 4343565 eIF-4G; eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 4329958 OsJ_07496; eukaryotic translation initiation factor isoform 4G-2 K03260 EIF4G; translation initiation factor 4G
E 4336300 RYMV1; eukaryotic translation initiation factor isoform 4G-1 K03260 EIF4G; translation initiation factor 4G
E 4341164 OsC3H43; zinc finger CCCH domain-containing protein 43 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 4341162 zinc finger CCCH domain-containing protein 42 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 4331593 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 4342669 OsJ_23477; DEAD-box ATP-dependent RNA helicase 52B K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4334493 OsJ_13017; dEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4350856 DEAD-box ATP-dependent RNA helicase 52C K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4341457 DEAD-box ATP-dependent RNA helicase 52A K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4327226 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 4345242 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4346409 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4341408 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 4336331 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4337438 uncharacterized protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 4332428 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 4346605 P0651G05.3; 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 4328375 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 4327290 uncharacterized protein K07575 MCTS; malignant T-cell-amplified sequence
E 4327323 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 4332324 partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 4328758 uncharacterized protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4343831 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4352279 glycine-rich RNA-binding protein blt801 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4348309 glycine-rich RNA-binding protein 10 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4337147 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4326641 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4329903 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4326212 OsJ_01215; rNA-binding protein P K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4345254 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4341330 uncharacterized protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4345910 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4350986 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 4348867 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 4325826 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 4342307 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 4343740 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 4336848 uncharacterized protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 4337409 uncharacterized protein isoform X5 K14416 HBS1; elongation factor 1 alpha-like protein
E 4326095 uncharacterized protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 9269039 protein PELOTA 1 isoform X1 K06965 PELO; protein pelota
E 4340509 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 4330785 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 4331680 OJ1134F05.6; dEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 4344088 uncharacterized protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E 4332457 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 9270017 SAC3 family protein A isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 4327459 SAC3 family protein A isoform X2 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 4338603 eukaryotic peptide chain release factor subunit 1-2 K03265 ETF1; peptide chain release factor subunit 1
E 4333840 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 4326511 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 4343757 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 4335338 uncharacterized protein K03267 ERF3; peptide chain release factor subunit 3
E 4329282 uncharacterized protein isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 4343292 regulator of nonsense transcripts 1 homolog isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 4330058 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 4335928 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 4341364 PP2A1; serine/threonine-protein phosphatase PP2A-1 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 4328734 PP2A3; serine/threonine-protein phosphatase PP2A-3 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 4331747 serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 4334494 PP2A2; serine/threonine-protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 4348601 OsJ_31490; serine/threonine-protein phosphatase PP2A-4 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 4346507 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 4341313 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 4328769 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 9270873 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 9266142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 4328580 serine/threonine protein phosphatase 2A regulatory subunit B''beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 4337821 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 4348893 probable serine/threonine protein phosphatase 2A regulatory subunit B''delta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 4334757 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4337970 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4336207 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4339558 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4342912 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4344549 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4333730 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4347742 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 4323870 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 4334045 uncharacterized protein isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 4345227 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 4331200 uncharacterized protein isoform X1 K18734 SMG8; protein SMG8
E 4339915 uncharacterized protein K18735 SMG9; protein SMG9
E 4327226 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 4334667 pumilio homolog 24 K14844 PUF6; pumilio homology domain family member 6
E 4325942 myosin-17 isoform X1 K10357 MYO5; myosin V
E 4330906 protein OPAQUE1 K10357 MYO5; myosin V
E 4334102 myosin-12 isoform X1 K10357 MYO5; myosin V
E 4343605 myosin-1 isoform X1 K10357 MYO5; myosin V
E 4331144 myosin-6 K10357 MYO5; myosin V
E 4341074 myosin-11 K10357 MYO5; myosin V
E 4348352 protein OPAQUE1 K10357 MYO5; myosin V
E 4348547 protein OPAQUE1 K10357 MYO5; myosin V
E 4329608 myosin-8 isoform X1 K10357 MYO5; myosin V
E 4334867 myosin-6 K10357 MYO5; myosin V
E 4339453 myosin-17 isoform X1 K10357 MYO5; myosin V
E 9271693 myosin-17 K10357 MYO5; myosin V
E 4326337 uncharacterized protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 4328770 uncharacterized protein K13210 FUBP; far upstream element-binding protein
E 9266838 uncharacterized protein K13210 FUBP; far upstream element-binding protein
E 4331810 REFA1; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 4331811 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 4331812 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 4331813 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 4341354 elongation factor 1-gamma 3 K03233 EEF1G; elongation factor 1-gamma
E 4328752 elongation factor 1-gamma 2 K03233 EEF1G; elongation factor 1-gamma
E 4328753 elongation factor 1-gamma 1 K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E 4331593 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 4348996 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4344900 KH domain-containing protein At4g18375 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4340961 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4327782 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4347471 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4352707 flowering locus K homology domain-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4332959 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4349406 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4333505 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 107275937 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4348619 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 4343089 KH domain-containing protein HEN4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 4328436 AGO17; protein argonaute 17 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4330281 AGO1A; protein argonaute 1A K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4331253 AGO1; protein argonaute 1C K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4333733 LOW QUALITY PROTEIN: protein argonaute 11-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4342138 AGO1D; protein argonaute 1D K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4342603 AGO14; protein argonaute 14 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4336991 AGO2; protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4333232 AGO7; protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4324438 AGO4A; protein argonaute 4A isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4335025 AGO4B; protein argonaute 4B K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4342886 LOW QUALITY PROTEIN: protein argonaute 16-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4334449 MEAL1; protein argonaute MEL1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4343201 AGO18; protein argonaute 18 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4334374 LOW QUALITY PROTEIN: protein argonaute 13-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 9269490 OsPNH1; protein argonaute PNH1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 9270411 AGO1B; protein argonaute 1B isoform 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 4332327 NCBP; eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 4348852 OsJ_31838; eukaryotic translation initiation factor isoform 4E-2 K03259 EIF4E; translation initiation factor 4E
E 4323837 eIF-4E-1; eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 4343292 regulator of nonsense transcripts 1 homolog isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 4342669 OsJ_23477; DEAD-box ATP-dependent RNA helicase 52B K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4334493 OsJ_13017; dEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4350856 DEAD-box ATP-dependent RNA helicase 52C K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4341457 DEAD-box ATP-dependent RNA helicase 52A K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 4336501 OsJ_15580; dEAD-box ATP-dependent RNA helicase 6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4330120 OsJ_07688; dEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4349053 OsJ_32082; dEAD-box ATP-dependent RNA helicase 12 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4326141 protein decapping 5 K18749 LSM14; protein LSM14
E 4341099 protein decapping 5 K18749 LSM14; protein LSM14
E 4331698 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 4337505 OsJ_16737; transportin-1 K18752 TNPO1; transportin-1
E 4334045 uncharacterized protein isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 4345227 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 4328758 uncharacterized protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4343831 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4352279 glycine-rich RNA-binding protein blt801 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4348309 glycine-rich RNA-binding protein 10 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4337147 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4326641 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4329903 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4326212 OsJ_01215; rNA-binding protein P K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4345254 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4341330 uncharacterized protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4345910 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 4334857 la-related protein 1C K18757 LARP1; la-related protein 1
E 4324370 la-related protein 1A isoform X1 K18757 LARP1; la-related protein 1
E 4331669 la-related protein 1C K18757 LARP1; la-related protein 1
E 4347728 la-related protein 1B K18757 LARP1; la-related protein 1
D P-body specific factors
E 4331069 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 4342837 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4351547 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4334709 mRNA-decapping enzyme-like protein isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4349816 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4335963 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 4344686 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 4325074 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 4326227 OsJ_01157; probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 4338670 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 4329449 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 112936013 uncharacterized protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 4344803 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 4339810 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 4325942 myosin-17 isoform X1 K10357 MYO5; myosin V
E 4330906 protein OPAQUE1 K10357 MYO5; myosin V
E 4334102 myosin-12 isoform X1 K10357 MYO5; myosin V
E 4343605 myosin-1 isoform X1 K10357 MYO5; myosin V
E 4331144 myosin-6 K10357 MYO5; myosin V
E 4341074 myosin-11 K10357 MYO5; myosin V
E 4348352 protein OPAQUE1 K10357 MYO5; myosin V
E 4348547 protein OPAQUE1 K10357 MYO5; myosin V
E 4329608 myosin-8 isoform X1 K10357 MYO5; myosin V
E 4334867 myosin-6 K10357 MYO5; myosin V
E 4339453 myosin-17 isoform X1 K10357 MYO5; myosin V
E 9271693 myosin-17 K10357 MYO5; myosin V
E 4333966 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 4350197 TID1; tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 4343694 tubA; tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 4332083 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 9272729 uncharacterized protein isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 4331296 uncharacterized protein isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 4330931 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4334027 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4339144 probable NOT transcription complex subunit VIP2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4333598 uncharacterized protein isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 4351244 uncharacterized protein isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4349535 uncharacterized protein isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4325536 uncharacterized protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4331740 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 4348610 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 4338672 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 4347066 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4337457 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4331006 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4345683 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 107277796 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 112936657 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4330762 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 4329076 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 9270665 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 4329480 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 4325594 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 4330568 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 4340825 enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 4330058 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 4335928 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 4338726 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 4332656 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 4334103 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 4325283 YTH domain-containing protein ECT2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 4346063 OsJ_27962; RNA-binding protein 208 K13201 TIA1; nucleolysin TIA-1/TIAR
E 4350940 oligouridylate-binding protein 1B K13201 TIA1; nucleolysin TIA-1/TIAR
E 4343900 oligouridylate-binding protein 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 4345242 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4346409 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4341408 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 4336331 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 4337438 uncharacterized protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 4332428 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 4346605 P0651G05.3; 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 4335600 nuclear transport factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 4329411 nuclear transport factor 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 4329922 uncharacterized protein isoform X1 K15026 EIF2A; translation initiation factor 2A
E 4349446 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 4328286 eIF-4A-3; eukaryotic initiation factor 4A-3 K03257 EIF4A; translation initiation factor 4A
E 4341966 eIF-4A-1; eukaryotic initiation factor 4A-1 K03257 EIF4A; translation initiation factor 4A
E 4328756 uncharacterized protein isoform X2 K03257 EIF4A; translation initiation factor 4A
E 4326580 EIF4A3A; eukaryotic initiation factor 4A-III homolog A K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 4333273 eIF4A-III; eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 4343565 eIF-4G; eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 4329958 OsJ_07496; eukaryotic translation initiation factor isoform 4G-2 K03260 EIF4G; translation initiation factor 4G
E 4336300 RYMV1; eukaryotic translation initiation factor isoform 4G-1 K03260 EIF4G; translation initiation factor 4G
E 4341164 OsC3H43; zinc finger CCCH domain-containing protein 43 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 4341162 zinc finger CCCH domain-containing protein 42 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 4339539 GPB-LR; small ribosomal subunit protein RACK1y K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 4324115 GPB-LR; small ribosomal subunit protein RACK1z K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 4342472 histone deacetylase 15 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 4323867 uncharacterized protein isoform X1 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 4342837 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4351547 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4334709 mRNA-decapping enzyme-like protein isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4349816 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 4331069 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 4336501 OsJ_15580; dEAD-box ATP-dependent RNA helicase 6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4330120 OsJ_07688; dEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4349053 OsJ_32082; dEAD-box ATP-dependent RNA helicase 12 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 4330568 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 4340825 enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 4329076 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 9270665 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 4329480 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 4325594 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 4335963 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 4344686 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 4325074 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 4326227 OsJ_01157; probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 4338670 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 4329449 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 112936013 uncharacterized protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 4344803 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 4339810 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 4324952 5'-3' exoribonuclease 3 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 4329368 5'-3' exoribonuclease 2 isoform X7 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 4334408 5'-3' exoribonuclease 4 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 4331133 exosome complex component csl4 K07573 CSL4; exosome complex component CSL4
E 4336421 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 4324917 uncharacterized protein K03681 RRP40; exosome complex component RRP40
E 4327851 uncharacterized protein K03681 RRP40; exosome complex component RRP40
E 4346519 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 4334824 oRrp46; exosome complex exonuclease RRP46 homolog K12590 RRP46; exosome complex component RRP46
E 4344519 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 9269241 exosome complex component RRP41-like isoform X1 K12587 MTR3; exosome complex component MTR3
E 4352037 uncharacterized protein K12589 RRP42; exosome complex component RRP42
E 4350355 uncharacterized protein K12586 RRP43; exosome complex component RRP43
E 4329627 exosome complex component RRP45A isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 4331494 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 4331677 protein RRP6-like 2 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 9270208 protein RRP6-like 2 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 4345136 uncharacterized protein K12592 C1D; exosome complex protein LRP1
E 4325469 uncharacterized protein K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 4325901 uncharacterized protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 4349924 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 9268439 DExH-box ATP-dependent RNA helicase DExH9 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 4328375 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 4349298 tetratricopeptide repeat protein SKI3 isoform X1 K12600 SKI3; superkiller protein 3
E 4351059 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 4331740 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 4348610 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 4338672 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 9272729 uncharacterized protein isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 4331296 uncharacterized protein isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 4330931 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4334027 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4339144 probable NOT transcription complex subunit VIP2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 4333598 uncharacterized protein isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 4351244 uncharacterized protein isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4349535 uncharacterized protein isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4325536 uncharacterized protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 4347066 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4337457 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4331006 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4345683 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 107277796 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 112936657 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 4336974 uncharacterized protein isoform X2 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 4329079 cell differentiation protein rcd1 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 4343622 uncharacterized protein isoform X2 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 9272009 uncharacterized protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 107275860 uncharacterized protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 4346428 uncharacterized protein K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 4331095 ABC transporter I family member 19 K12608 CAF16; CCR4-NOT complex subunit CAF16
E 4332655 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 4345682 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 9268289 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 4325502 DExH-box ATP-dependent RNA helicase DExH6 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 4326075 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 4334111 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 4326908 B1085F09.4; 3'-5' exoribonuclease 1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 4330879 uncharacterized protein K26109 NRDE2; nuclear exosome regulator NRDE2
E 4325197 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 4329319 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
E 9270337 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 4344306 uncharacterized protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 4340042 enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 4348176 AD709; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 4346906 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 4332253 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 4332356 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 4342497 PNP1; probable polyribonucleotide nucleotidyltransferase 1, chloroplastic K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 4329995 PNP2; polyribonucleotide nucleotidyltransferase 2, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 4339369 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4327301 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4348582 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4347060 ATP-dependent 6-phosphofructokinase 5, chloroplastic isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4347383 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4336113 ATP-dependent 6-phosphofructokinase 2-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4338034 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4340153 ATP-dependent 6-phosphofructokinase 3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 4327196 ATP-dependent 6-phosphofructokinase 6 isoform X2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 4330888 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 4331379 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 9270165 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 4327993 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 4348824 chaperonin CPN60-1, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 4331590 chaperonin CPN60-1, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 4339466 chaperonin CPN60-like 2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 107275738 chaperonin 60 subunit beta 4, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 4336421 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 4331133 exosome complex component csl4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 4346519 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 4352037 uncharacterized protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024