+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Oryza sativa japonica (Japanese rice)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        4337831 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        9267835 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        136351388 DNA-directed RNA polymerase II subunit RPB1-like	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        4333571 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        4346392 DNA-directed RNA polymerases II, IV and V subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        4342517 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        4328083 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        4330570 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        4338726 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        4352511 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        4331295 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        4343902 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X1	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        4327549 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        9270850 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4349748 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4351463 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4343168 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4333343 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4334766 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        4341946 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        9272152 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        9269422 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        136357350 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        4349985 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        4351671 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        4336722 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        4347810 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        4328330 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        4337169 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        4344774 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        4337866 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        107278405 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        4338303 uncharacterized protein isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        4337575 TFIIAy; transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        4323838 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        4347689 P0569E11.1; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        4331943 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        4339510 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        107276500 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        107277507 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        4333619 TBP-2; tATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4348699 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4352633 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        9266475 transcription initiation factor TFIID subunit 1 isoform X2	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        4347029 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        4333214 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        4330186 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        4341679 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        4342682 transcription initiation factor TFIID subunit 5 isoform X2	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        4324027 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        4338489 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        4333405 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        9270043 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        4333084 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        4347127 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        4325286 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        4325055 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        4327470 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        9268703 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        4345330 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        107278090 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        107277854 uncharacterized protein isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        4348554 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        4331801 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        4348225 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        4339276 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        9270266 transcription initiation factor IIF subunit beta isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        4345313 general transcription and DNA repair factor IIH subunit TFB1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        4336358 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        4328152 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        4337426 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        4325640 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        4337788 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        4343686 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        4338052 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        4338689 CAK-R2; cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        4340268 uncharacterized LOC4340268	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        4350497 uncharacterized protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        4334040 CYCH-1; cyclin-H1-1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        4340496 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        4328559 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        4330605 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        4352909 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        4328596 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        4347187 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        4325800 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        4345849 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        4337847 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        4337290 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        4347648 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        4344610 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        4349407 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
E        4342476 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        4345299 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        4346616 mediator of RNA polymerase II transcription subunit 14 isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        4349519 CDKE-1; cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        9272663 cycC1; cyclin-C1-1	K15161 CCNC; cyclin-C 
E        4338949 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        4330633 mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        4346673 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        4326197 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        4349300 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        4342710 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        4344305 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        4348629 GCN5; histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        9270052 uncharacterized protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        4334126 ADA2; transcriptional adapter ADA2	K11314 TADA2A; transcriptional adapter 2-alpha 
E        4347029 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        4333214 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        4330186 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        4341679 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        4342682 transcription initiation factor TFIID subunit 5 isoform X2	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        4324027 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        4338489 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        4333084 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        4347127 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        4325055 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        4327470 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        4338504 SAGA-associated factor 11 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        4352010 SAGA-associated factor 29 homolog A isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        4344175 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        4327741 transcription and mRNA export factor ENY2 isoform X1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        4337205 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        4328237 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
E        4342674 uncharacterized protein isoform X1	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        4328058 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        4330573 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        4349954 CHB705; SWI/SNF complex subunit SWI3C homolog	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        4334928 SWI/SNF complex subunit SWI3D isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        4328597 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        9266524 SWI/SNF complex subunit SWI3C homolog isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        4333941 SWI/SNF complex subunit SWI3D isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        129388410 RSC chromatin remodeling complex subunit RSC8	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        4335638 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        4344621 ARP4; actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        4330573 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        4327671 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        4329646 RNA polymerase II transcriptional coactivator KIWI	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        4341311 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        4342769 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        4343956 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        4340446 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        9270554 transcription elongation factor SPT6 homolog isoform X2	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        4347878 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        4344833 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        9266269 probable cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        4334816 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        4341840 OsC3H45; zinc finger CCCH domain-containing protein 45	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        4331166 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        4332369 OJ1364E02.17; serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        4345748 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        4326473 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        4340228 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        4344390 uncharacterized protein isoform X1	K06100 SYMPK; symplekin 
E        4323885 uncharacterized protein isoform X1	K06100 SYMPK; symplekin 
E        4351607 uncharacterized protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        4324952 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        4329368 5'-3' exoribonuclease 2 isoform X7	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        9268788 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        4337145 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        4349670 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        4351389 UPF0400 protein C337.03	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        4327230 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        112937619 disease resistance protein RPP13	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        4347996 probable helicase MAGATAMA 3 isoform X1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        4337307 uncharacterized protein	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        9266162 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        4344699 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        4333654 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        4343217 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        4352631 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        4342220 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        107276186 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        4352419 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        4324047 uncharacterized protein isoform X1	K15186 EAF; ELL-associated factor 
E        4352229 CYCT1-1; cyclin-T1-4	K15188 CCNT; cyclin T 
E        4329229 cycT1; cyclin-T1-2 isoform X1	K15188 CCNT; cyclin T 
E        4328207 CYCT1-1; cyclin-T1-1 isform 1	K15188 CCNT; cyclin T 
E        136353988 cyclin-T1-3	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        4352229 CYCT1-1; cyclin-T1-4	K15188 CCNT; cyclin T 
E        4329229 cycT1; cyclin-T1-2 isoform X1	K15188 CCNT; cyclin T 
E        4328207 CYCT1-1; cyclin-T1-1 isform 1	K15188 CCNT; cyclin T 
E        136353988 cyclin-T1-3	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        4346188 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        4333271 la-related protein 6C isoform X1	K15191 LARP7; La-related protein 7 
E        4342177 la-related protein 6C	K15191 LARP7; La-related protein 7 
E        9269121 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        4350201 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        4346201 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        4325141 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        4352229 CYCT1-1; cyclin-T1-4	K15188 CCNT; cyclin T 
E        4329229 cycT1; cyclin-T1-2 isoform X1	K15188 CCNT; cyclin T 
E        4328207 CYCT1-1; cyclin-T1-1 isform 1	K15188 CCNT; cyclin T 
E        136353988 cyclin-T1-3	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        4328386 TATA-binding protein-associated factor BTAF1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        4345446 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        4339189 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        4350685 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        4350317 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        9272164 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        4330100 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        4324753 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        4336474 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        4350606 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        4338679 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        4327404 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        4338072 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        4339051 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        4325206 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        4341363 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        4337724 OsJ_17019; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        4337703 uncharacterized protein	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        4333905 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        4332772 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        4329653 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        4332638 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        4336254 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        4333066 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        4332531 uncharacterized protein isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        4351715 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        4325277 uncharacterized protein isoform X2	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        4324905 uncharacterized protein isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        9268125 uncharacterized protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        4341464 DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        4343875 uncharacterized protein isoform X2	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        4343220 DNA-directed RNA polymerase III subunit RPC8 isoform X3	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        4352240 uncharacterized protein isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        4330285 uncharacterized protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        4327549 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        9270850 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4349748 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4351463 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4343168 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4333343 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4334766 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        4341946 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        9272152 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        9269422 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        136357350 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        4349985 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        4351671 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        4337652 transcription factor IIIA isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        4328076 transcription factor IIIA isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        4333619 TBP-2; tATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4348699 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4352633 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4338362 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        9267825 uncharacterized protein	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        4330065 uncharacterized protein isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        4339658 uncharacterized protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        4324762 uncharacterized protein isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        9269796 uncharacterized protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        4350254 uncharacterized protein isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        4323940 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        4336478 uncharacterized LOC4336478	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        4323940 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        4350254 uncharacterized protein isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        4348989 uncharacterized protein	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        4324317 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        4337299 uncharacterized protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        9270399 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        9270457 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        4332531 uncharacterized protein isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        4351715 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        4350918 DNA-directed RNA polymerase I subunit rpa49 isoform X1	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        4325336 transcriptional activator HAP5	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        4333888 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        4327549 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        9270850 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4349748 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4351463 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        4343168 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4333343 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        4334766 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        4341946 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        9272152 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        9269422 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        136357350 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        4349985 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        4351671 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        4333619 TBP-2; tATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4348699 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        4352633 TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        4328927 high mobility group B protein 13	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        4341897 uncharacterized protein isoform X1	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        107275975 upstream activation factor subunit spp27	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        4343956 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        4340446 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        4337825 probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        4325731 ISW2-like; probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        3131431 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        3131432 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        3131433 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        3131434 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        4344738 RNA polymerase sigma factor SigA-like	K03086 rpoD; RNA polymerase primary sigma factor 
E        4339759 RNA polymerase sigma factor SigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
E        4339778 RNA polymerase sigma factor SigC	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        4347689 P0569E11.1; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        4331943 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        4339510 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        107276500 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        107277507 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        4345330 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        107278090 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        107277854 uncharacterized protein isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 9, 2024