+E Transcription factors KO #

  Transcription Factors - Pseudomonas maumuensis

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D KSS90_02945 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D KSS90_12445 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D KSS90_11285 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D KSS90_15920 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D KSS90_09530 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D KSS90_16310 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D KSS90_04680 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D KSS90_04250 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D KSS90_10705 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D KSS90_01645 GlxA family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D KSS90_07610 argR; transcriptional regulator ArgR K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D KSS90_01605 GlxA family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D KSS90_14310 GlxA family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D KSS90_13090 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_13870 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_15670 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_16020 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_20650 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_21775 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_07545 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D KSS90_20400 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D KSS90_20230 metR; transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D KSS90_08940 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D KSS90_16555 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D KSS90_25010 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D KSS90_20935 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D KSS90_17410 cynR; transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D KSS90_02010 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D KSS90_09345 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D KSS90_10615 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D KSS90_11625 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D KSS90_25145 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D KSS90_03790 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D KSS90_01395 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D KSS90_25200 LysR family transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator D KSS90_09455 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D KSS90_00180 LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D KSS90_20180 glpR; DNA-binding transcriptional repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D KSS90_16235 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D KSS90_11485 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D KSS90_21590 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D KSS90_13560 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D KSS90_23545 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D KSS90_05690 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D KSS90_00865 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D KSS90_11545 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D KSS90_09100 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D KSS90_22430 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D KSS90_17965 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D KSS90_15340 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D KSS90_09280 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D KSS90_25170 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D KSS90_15105 GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator C TetR/AcrR family D KSS90_23695 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D KSS90_20685 ttgR; efflux transport transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D KSS90_03785 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D KSS90_08315 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D KSS90_10105 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D KSS90_11080 TetR family transcriptional regulator C-terminal domain-containing protein K09017 rutR; TetR/AcrR family transcriptional regulator D KSS90_22660 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D KSS90_15180 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D KSS90_05930 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D KSS90_11385 transcriptional regulator K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor C Lrp/AsnC family D KSS90_03220 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_03270 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_07910 bkdR; Bkd operon transcriptional regulator BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_08185 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_21295 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_24815 dadR; transcriptional regulator DadR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D KSS90_01110 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D KSS90_06680 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D KSS90_10650 autoinducer binding domain-containing protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D KSS90_13225 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D KSS90_10355 LuxR C-terminal-related transcriptional regulator K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons D KSS90_04590 LuxR C-terminal-related transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D KSS90_07430 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D KSS90_24600 winged helix DNA-binding protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D KSS90_18790 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D KSS90_03740 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D KSS90_17105 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D KSS90_13150 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D KSS90_04450 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D KSS90_22410 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D KSS90_00355 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D KSS90_20765 pcaR; pca regulon transcriptional regulator PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D KSS90_02285 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D KSS90_20715 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D KSS90_08530 fnrA; Crp/Fnr family transcriptional regulator FnrA K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D KSS90_04910 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D KSS90_15545 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D KSS90_05585 hexR; DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D KSS90_25210 hexR; transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D KSS90_02380 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D KSS90_22465 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D KSS90_14270 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D KSS90_08050 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D KSS90_02995 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D KSS90_11330 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D KSS90_21490 norR; nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D KSS90_14885 helix-turn-helix domain-containing protein K02647 cdaR; carbohydrate diacid regulator D KSS90_00655 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D KSS90_01955 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D KSS90_13835 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D KSS90_02070 transcriptional regulator K07726 K07726; putative transcriptional regulator D KSS90_01470 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D KSS90_23085 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D KSS90_19220 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D KSS90_25480 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D KSS90_07575 sigma-54-dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D KSS90_05465 sigma-54-dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D KSS90_06565 glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor D KSS90_12700 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D KSS90_00725 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D KSS90_23350 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D KSS90_25175 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D KSS90_23340 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D KSS90_12035 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D KSS90_17185 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D KSS90_22190 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D KSS90_02785 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D KSS90_02885 rtcR; RNA repair transcriptional activator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D KSS90_21180 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0